vOTU vOTU-064888

vOTU: vOTU-064888

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-064888
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00025 → vSUBFAM-00671 → vGENUS-16144 → vSUBGEN-28781 → vOTU-064888
Host lineage	Bacteria → Firmicutes_A → Clostridia → TANB77 → CAG-508 → CAG-273
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1490585
Biosample ID	SAMEA3646688
Genome length (bp)	36,726 bps
CheckV completeness	94.89% (High-quality)
CDS count	62
CDS density	93.19%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → TANB77 → CAG-508 → CAG-273	Total connections	114	Host agreement	71.05
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → TANB77 → CAG-508 → CAG-273 → CAG-273 sp000435755	Total connections	9	Host agreement	77.78

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 94.89)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-1490585_2	1131462.DCF50_p1798	240.0	0	N/A	N/A
Pfam	UHGV-1490585_2	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
KOfam	UHGV-1490585_3	K22409	46.8	0.00000000000052	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1490585_3	phrog_4602	53.6	0.0000000000000055	transglycosylase	other
eggNOG-mapper	UHGV-1490585_3	483219.LILAB_06590	70.1	0.0000000000604	Lysin motif	N/A
Pfam	UHGV-1490585_3	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-1490585_3	COG1388	N/A	N/A	LysM repeat	N/A
PHROG	UHGV-1490585_4	phrog_9589	88.8	7.4e-26	endolysin	lysis
UniRef90	UHGV-1490585_4	UniRef90_UPI000B195CAC	191.0	0	LysM peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-1490585_4	552398.HMPREF0866_03091	182.0	0	CHAP domain	N/A
Pfam	UHGV-1490585_4	PF05257	N/A	N/A	CHAP domain	CHAP
COG	UHGV-1490585_4	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-1490585_4	PF00877,TIGR02594,COG3942	N/A	N/A	N/A	N/A
PHROG	UHGV-1490585_5	phrog_881	73.9	1.4e-21	holin	lysis
UniRef90	UHGV-1490585_5	UniRef90_A0A1I7JG50	71.6	0.0000000000000047	Putative phage holin Dp-1	N/A
eggNOG-mapper	UHGV-1490585_5	1140001.I571_01849	61.6	0.00000000000664	Putative phage holin Dp-1	N/A
Pfam	UHGV-1490585_5	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-1490585_5	PF16938,COG3237	N/A	N/A	N/A	N/A
PHROG	UHGV-1490585_7	phrog_372	266.9	0	tail protein	tail
UniRef90	UHGV-1490585_7	UniRef90_UPI001D0897E0	142.0	4.31e-32	N/A	N/A
eggNOG-mapper	UHGV-1490585_7	1235802.C823_05263	125.0	2.67e-27	N/A	N/A
Pfam	UHGV-1490585_7	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-1490585_7	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-1490585_7	PF05895,MF_04116,NF010681,COG3291	N/A	N/A	N/A	N/A
PHROG	UHGV-1490585_9	phrog_3287	100.5	1.3e-29	virion structural protein	head and packaging
eggNOG-mapper	UHGV-1490585_9	1232449.BAHV02000016_gene1816	327.0	0	N/A	N/A
structural_annotation	UHGV-1490585_9	PF11134,MF_00923,TIGR04312,COG5276,COG4935	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1490585_10	693746.OBV_23880	62.4	0.000000000815	N/A	N/A
PHROG	UHGV-1490585_12	phrog_1357	227.1	0	major head protein	head and packaging
UniRef90	UHGV-1490585_12	UniRef90_A0A8D9UHB3	284.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-1490585_12	696281.Desru_1092	240.0	0	N/A	N/A
NCBIFam	UHGV-1490585_12	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1490585_12	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1490585_14	phrog_156	138.6	3.00004e-41	portal protein	head and packaging
UniRef90	UHGV-1490585_14	UniRef90_A0A8D9UHD1	361.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-1490585_14	1121091.AUMP01000003_gene2583	308.0	0	N/A	N/A
structural_annotation	UHGV-1490585_14	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-1490585_16	K06909	135.6	4.9e-40	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1490585_16	phrog_979	154.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-1490585_16	UniRef90_A0A0M2NDA4	535.0	0	Phage terminase, large subunit	N/A
eggNOG-mapper	UHGV-1490585_16	1232449.BAHV02000016_gene1824	536.0	0	N/A	N/A
Pfam	UHGV-1490585_16	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-1490585_16	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1490585_16	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-1490585_17	UniRef90_UPI0014940E84	54.7	0.00000675	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-1490585_17	PF06056,COG2963	N/A	N/A	N/A	N/A
PHROG	UHGV-1490585_19	phrog_248	41.2	0.000000000033	transcriptional activator	transcription regulation
Pfam	UHGV-1490585_19	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-1490585_19	PF05263,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1490585_34	phrog_625	74.7	8e-22	N/A	unknown function
UniRef90	UHGV-1490585_34	UniRef90_A0A3A8X7G1	119.0	1.25e-32	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1490585_34	397290.C810_01502	115.0	4.48e-32	N/A	N/A
structural_annotation	UHGV-1490585_34	PF12961	N/A	N/A	N/A	N/A
KOfam	UHGV-1490585_37	K01160	48.3	0.00000000000026	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1490585_37	phrog_1682	79.6	4.5e-23	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1490585_37	UniRef90_R7FGZ0	110.0	8.45e-29	Gp63	N/A
eggNOG-mapper	UHGV-1490585_37	428125.CLOLEP_01819	92.8	1.1e-22	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
Pfam	UHGV-1490585_37	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1490585_37	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1490585_37	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1490585_38	PF15188	N/A	N/A	N/A	N/A
PHROG	UHGV-1490585_42	phrog_1123	57.2	2.4e-16	N/A	unknown function
eggNOG-mapper	UHGV-1490585_42	411483.FAEPRAA2165_01885	48.5	0.0000073	N/A	N/A
Pfam	UHGV-1490585_42	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-1490585_42	PF02002,TIGR03433,COG1695	N/A	N/A	N/A	N/A
PHROG	UHGV-1490585_43	phrog_2289	48.8	0.00000000000013	helicase loader	DNA, RNA and nucleotide metabolism
structural_annotation	UHGV-1490585_43	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-1490585_44	phrog_15768	94.9	1.1e-27	N/A	unknown function
eggNOG-mapper	UHGV-1490585_44	411473.RUMCAL_00873	87.0	3.47e-19	Phage replisome organizer, N-terminal domain protein	N/A
COG	UHGV-1490585_44	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
PHROG	UHGV-1490585_45	phrog_16304	128.5	6.3e-38	N/A	unknown function
UniRef90	UHGV-1490585_45	UniRef90_A0A315Y0M2	96.3	8.38e-24	N/A	N/A
eggNOG-mapper	UHGV-1490585_45	33035.JPJF01000071_gene4467	86.3	2.68e-19	N/A	N/A
Pfam	UHGV-1490585_45	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-1490585_45	PF19808	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1490585_46	PF11506,MF_00720,NF004948,COG3390	N/A	N/A	N/A	N/A
PHROG	UHGV-1490585_47	phrog_7566	54.1	0.0000000000000027	N/A	unknown function
PHROG	UHGV-1490585_48	phrog_72	65.2	1.1e-18	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1490585_48	UniRef90_A0A285PU94	63.2	0.00000000198	Recombinase NinB	N/A
eggNOG-mapper	UHGV-1490585_48	411468.CLOSCI_00314	71.6	0.000000000000185	N/A	N/A
structural_annotation	UHGV-1490585_48	NF007281	N/A	N/A	N/A	N/A
KOfam	UHGV-1490585_49	K03111	144.2	1.3004e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1490585_49	phrog_44	145.5	2.8026e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1490585_49	UniRef90_R7IS09	198.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1490585_49	1291050.JAGE01000001_gene1719	174.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1490585_49	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1490585_49	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1490585_49	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1490585_49	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1490585_49	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1490585_50	phrog_155	133.9	1.1e-39	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1490585_50	UniRef90_A0A3D1PJF8	295.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1490585_50	1304866.K413DRAFT_1196	216.0	0	ERF superfamily	N/A
Pfam	UHGV-1490585_50	PF04404	N/A	N/A	ERF superfamily	ERF
COG	UHGV-1490585_50	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1490585_50	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1490585_52	PF09943,COG3461	N/A	N/A	N/A	N/A
PHROG	UHGV-1490585_54	phrog_1305	139.0	2.29995e-41	DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1490585_54	UniRef90_N1ZZ26	241.0	0	N/A	N/A
eggNOG-mapper	UHGV-1490585_54	1235802.C823_04729	241.0	0	N/A	N/A
Pfam	UHGV-1490585_54	PF13643	N/A	N/A	N/A	DUF4145
structural_annotation	UHGV-1490585_54	PF13643	N/A	N/A	N/A	N/A
PHROG	UHGV-1490585_55	phrog_14088	58.0	1.1e-16	N/A	unknown function
eggNOG-mapper	UHGV-1490585_55	1256908.HMPREF0373_00648	67.8	0.0000000000000125	N/A	N/A
KOfam	UHGV-1490585_58	K07729	42.2	0.000000000015	K07729; putative transcriptional regulator	N/A
UniRef90	UHGV-1490585_58	UniRef90_A0A2T0BQ53	68.2	0.000000000000174	HTH-type transcriptional regulator Xre	N/A
eggNOG-mapper	UHGV-1490585_58	697281.Mahau_2932	54.7	0.00000000728	PFAM helix-turn-helix domain protein	N/A
Pfam	UHGV-1490585_58	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1490585_58	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1490585_58	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1490585_59	K07729	42.9	0.00000000001	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-1490585_59	phrog_8	49.7	0.000000000000087	transcriptional regulator	transcription regulation
UniRef90	UHGV-1490585_59	UniRef90_A0A1Q6LHM3	110.0	4.77e-29	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1490585_59	235909.GK0493	60.1	0.000000000503	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1490585_59	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1490585_59	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1490585_59	PF12844,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1490585_61	K14059	272.1	0	int; integrase	N/A
PHROG	UHGV-1490585_61	phrog_1	240.4	0	integrase	integration and excision
UniRef90	UHGV-1490585_61	UniRef90_R6HDS7	312.0	0	Phage integrase	N/A
eggNOG-mapper	UHGV-1490585_61	273068.TTE2127	254.0	0	Phage integrase family	N/A
Pfam	UHGV-1490585_61	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1490585_61	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1490585_61	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1490585_61	PF00589,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-1490585_62	K02358	147.2	1.20512e-43	tuf, TUFM; elongation factor Tu	N/A
UniRef90	UHGV-1490585_62	UniRef90_A0A3D0XYK2	157.0	0	Elongation factor Tu (Fragment)	N/A
eggNOG-mapper	UHGV-1490585_62	1347392.CCEZ01000044_gene608	149.0	9.99126e-43	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis	N/A
Pfam	UHGV-1490585_62	PF03143	N/A	N/A	Elongation factor Tu C-terminal domain	GTP_EFTU_D3
COG	UHGV-1490585_62	COG0050	N/A	N/A	Translation elongation factor EF-Tu, a GTPase	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1490585	Yes	36,726	30	95	1