vOTU vOTU-065085

vOTU: vOTU-065085

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-065085
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-03316 → vGENUS-04657 → vSUBGEN-07737 → vOTU-065085
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170 → CAG-170 sp000432135
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1346093
Biosample ID	N/A
Genome length (bp)	43,104 bps
CheckV completeness	99.70% (High-quality)
CDS count	61
CDS density	92.43%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170 → CAG-170 sp000432135	Total connections	61	Host agreement	77.05
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Faecousia → Faecousia sp900546415	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.7)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1346093_1	K19719	157.5	0	COL2A; collagen type II alpha	N/A
PHROG	UHGV-1346093_1	phrog_6320	118.2	0	tail fiber protein	tail
eggNOG-mapper	UHGV-1346093_1	1519439.JPJG01000060_gene1892	109.0	5.38e-22	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-1346093_1	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-1346093_1	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
PHROG	UHGV-1346093_3	phrog_371	119.0	4.2e-35	major head protein	head and packaging
UniRef90	UHGV-1346093_3	UniRef90_R6TFU9	297.0	0	Mu-like_gpT domain-containing protein	N/A
eggNOG-mapper	UHGV-1346093_3	1226322.HMPREF1545_03848	313.0	0	N/A	N/A
Pfam	UHGV-1346093_3	PF10124	N/A	N/A	Mu-like prophage major head subunit gpT	Mu-like_gpT
structural_annotation	UHGV-1346093_3	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1346093_4	phrog_24113	102.0	3.7e-30	N/A	unknown function
eggNOG-mapper	UHGV-1346093_4	1226322.HMPREF1545_03847	84.0	7.74e-19	N/A	N/A
structural_annotation	UHGV-1346093_4	PF11133,COG5471	N/A	N/A	N/A	N/A
PHROG	UHGV-1346093_5	phrog_35275	150.3	1.4013e-45	N/A	unknown function
eggNOG-mapper	UHGV-1346093_5	1226322.HMPREF1545_03846	112.0	7.45e-26	N/A	N/A
PHROG	UHGV-1346093_7	phrog_156	274.4	0	portal protein	head and packaging
eggNOG-mapper	UHGV-1346093_7	1519439.JPJG01000060_gene1886	585.0	0	N/A	N/A
structural_annotation	UHGV-1346093_7	PF12236,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-1346093_8	K06909	229.8	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1346093_8	phrog_3717	209.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-1346093_8	UniRef90_H7BW36	591.0	0	Terminase_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1346093_8	1519439.JPJG01000060_gene1885	587.0	0	phage Terminase large subunit	N/A
Pfam	UHGV-1346093_8	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-1346093_8	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1346093_8	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1346093_8	PF04466,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1346093_9	phrog_606	56.3	5.3e-16	terminase small subunit	head and packaging
eggNOG-mapper	UHGV-1346093_9	1226322.HMPREF1545_03842	90.5	4.46e-20	DNA-packaging protein gp3	N/A
Pfam	UHGV-1346093_9	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-1346093_9	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-1346093_11	phrog_3584	113.0	2.5e-33	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1346093_11	537013.CLOSTMETH_02141	68.6	0.0000000000215	N/A	N/A
structural_annotation	UHGV-1346093_11	PF21578,MF_00360	N/A	N/A	N/A	N/A
KOfam	UHGV-1346093_12	K00571	94.1	1.7e-27	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1346093_12	phrog_23224	69.6	1e-22	DNA methyltransferase	other
UniRef90	UHGV-1346093_12	UniRef90_A0A413FXK5	273.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1346093_12	1125725.HMPREF1325_1312	182.0	0	N-4 methylation of cytosine	N/A
PADLOC	UHGV-1346093_12	MTase_II_00172	114.1	1.7e-33	Type II methyltransferase	RM
Pfam	UHGV-1346093_12	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1346093_12	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1346093_12	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1346093_13	PF08271	N/A	N/A	N/A	N/A
PHROG	UHGV-1346093_16	phrog_374	68.6	1.3e-19	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1346093_16	756499.Desde_1078	69.7	0.0000000000114	N/A	N/A
PHROG	UHGV-1346093_17	phrog_190	106.5	2.4e-31	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1346093_17	UniRef90_UPI0006C2AC63	131.0	2e-36	N/A	N/A
eggNOG-mapper	UHGV-1346093_17	1226322.HMPREF1545_00295	116.0	4.05e-31	N/A	N/A
Pfam	UHGV-1346093_17	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1346093_17	PF06356	N/A	N/A	N/A	N/A
UniRef90	UHGV-1346093_19	UniRef90_A0A8D9PDT5	53.9	0.00000038	Hydrogenase/urease nickel incorporation protein	N/A
PHROG	UHGV-1346093_21	phrog_599	50.8	0.000000000000039	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1346093_21	UniRef90_A0A845MWR1	53.1	0.0000000658	Restriction alleviation protein, Lar family	N/A
Pfam	UHGV-1346093_21	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-1346093_21	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-1346093_21	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-1346093_21	PF14354,NF007260	N/A	N/A	N/A	N/A
PHROG	UHGV-1346093_23	phrog_38832	86.3	1.6e-26	N/A	unknown function
eggNOG-mapper	UHGV-1346093_23	665956.HMPREF1032_00143	89.7	1.51e-20	N/A	N/A
structural_annotation	UHGV-1346093_23	PF18358	N/A	N/A	N/A	N/A
PHROG	UHGV-1346093_24	phrog_5781	72.5	6e-21	N/A	unknown function
UniRef90	UHGV-1346093_24	UniRef90_R5AT00	116.0	9.22e-32	Gp57	N/A
eggNOG-mapper	UHGV-1346093_24	573061.Clocel_3558	90.5	2.17e-22	N/A	N/A
Pfam	UHGV-1346093_24	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-1346093_24	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-1346093_24	PF14359,MF_03036,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-1346093_25	phrog_3136	133.5	8.1e-40	N/A	unknown function
UniRef90	UHGV-1346093_25	UniRef90_A0A3D0HBD2	157.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1346093_25	1235792.C808_00630	89.7	6.27e-20	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
Pfam	UHGV-1346093_25	PF04266	N/A	N/A	ASCH domain	ASCH
COG	UHGV-1346093_25	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1346093_25	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
Pfam	UHGV-1346093_26	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-1346093_26	NF041588	N/A	N/A	N/A	N/A
KOfam	UHGV-1346093_28	K00558	166.1	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1346093_28	phrog_363	247.5	0	DNA methyltransferase	other
UniRef90	UHGV-1346093_28	UniRef90_G4KRB8	349.0	0	Cytosine-specific methyltransferase	N/A
eggNOG-mapper	UHGV-1346093_28	693746.OBV_01900	349.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-1346093_28	MTase_II_00058	122.2	4.9e-36	Type II methyltransferase	RM
Pfam	UHGV-1346093_28	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-1346093_28	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-1346093_28	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1346093_28	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1346093_32	PF05082	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1346093_33	NF041247	N/A	N/A	N/A	N/A
KOfam	UHGV-1346093_39	K22300	45.9	0.0000000000012	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-1346093_39	UniRef90_A0A1Y4L0A2	121.0	5.33e-33	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1346093_39	748224.HMPREF9436_01444	107.0	4.36e-28	N/A	N/A
Pfam	UHGV-1346093_39	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1346093_39	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1346093_39	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1346093_40	1297617.JPJD01000060_gene2597	68.9	0.00000000009	Metallo-beta-lactamase superfamily	N/A
Pfam	UHGV-1346093_40	PF02805	N/A	N/A	Metal binding domain of Ada	Ada_Zn_binding
COG	UHGV-1346093_40	COG2333	N/A	N/A	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	N/A
KOfam	UHGV-1346093_42	K23779	47.1	0.00000000000049	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-1346093_42	phrog_8	43.7	0.0000000000057	transcriptional regulator	transcription regulation
Pfam	UHGV-1346093_42	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1346093_42	COG0662	N/A	N/A	Mannose-6-phosphate isomerase, cupin superfamily	N/A
structural_annotation	UHGV-1346093_42	PF13560,MF_00535,TIGR03070,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1346093_43	K06400	343.6	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1346093_43	phrog_95	339.9	0	integrase	integration and excision
UniRef90	UHGV-1346093_43	UniRef90_G4KP73	452.0	0	Putative site-specific recombinase	N/A
eggNOG-mapper	UHGV-1346093_43	693746.OBV_21880	452.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1346093_43	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1346093_43	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1346093_43	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1346093_43	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1346093_43	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-1346093_44	UniRef90_A0A8F0WD75	73.9	0.000000000000241	RNA polymerase sigma factor/Ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-1346093_44	1378168.N510_03079	68.2	0.0000000000153	N/A	N/A
eggNOG-mapper	UHGV-1346093_47	1226322.HMPREF1545_00787	872.0	0	N/A	N/A
eggNOG-mapper	UHGV-1346093_48	1226322.HMPREF1545_00786	84.7	0.00000000000000426	N/A	N/A
PHROG	UHGV-1346093_49	phrog_511	223.9	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-1346093_49	1519439.JPJG01000060_gene1903	485.0	0	N/A	N/A
structural_annotation	UHGV-1346093_49	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-1346093_50	phrog_16040	60.1	1.8e-17	virion structural protein	head and packaging
Pfam	UHGV-1346093_50	PF07902	N/A	N/A	gp58-like protein	Gp58
structural_annotation	UHGV-1346093_50	NF038340	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1346093_51	PF16509,MF_00245,NF008895,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-1346093_52	phrog_14030	151.2	5.60519e-45	N/A	unknown function
UniRef90	UHGV-1346093_52	UniRef90_R6LL81	268.0	0	SLH domain-containing protein	N/A
eggNOG-mapper	UHGV-1346093_52	1095750.HMPREF9970_0318	140.0	1.93e-37	Putative cell wall binding repeat	N/A
COG	UHGV-1346093_52	COG5263	N/A	N/A	Glucan-binding domain (YG repeat)	N/A
eggNOG-mapper	UHGV-1346093_53	411470.RUMGNA_00254	77.8	8.42e-18	N/A	N/A
PHROG	UHGV-1346093_55	phrog_937	60.2	4.1e-17	hemolysin	other
eggNOG-mapper	UHGV-1346093_56	1280680.AUJU01000007_gene2291	64.3	0.0000000328	Ricin-type beta-trefoil	N/A
Pfam	UHGV-1346093_56	PF09479	N/A	N/A	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
NCBIFam	UHGV-1346093_56	TIGR02543.1	N/A	N/A	TIGR02543 family repeat protein	N/A
COG	UHGV-1346093_56	COG3210	N/A	N/A	Large exoprotein involved in heme utilization or adhesion	N/A
KOfam	UHGV-1346093_57	K08131	47.8	0.000000000000055	COL9A; collagen type IX alpha	N/A
PHROG	UHGV-1346093_57	phrog_3904	85.2	2.1e-27	tail fiber protein	tail
eggNOG-mapper	UHGV-1346093_57	1519439.JPJG01000060_gene1892	107.0	2.25e-24	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-1346093_57	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-1346093_57	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
eggNOG-mapper	UHGV-1346093_59	1519439.JPJG01000060_gene1895	126.0	3.03e-34	N/A	N/A
structural_annotation	UHGV-1346093_59	PF10618	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1346093	Yes	43,104	57	100	1
UHGV-0136639	No	14,386	59	33	1
UHGV-1667299	No	11,301	59	26	1