vOTU vOTU-065257

vOTU: vOTU-065257

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-065257
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00040 → vSUBFAM-00184 → vGENUS-00321 → vSUBGEN-03982 → vOTU-065257
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae
Host range breadth	Family
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0031664
Biosample ID	SAMEA4765714
Genome length (bp)	39,780 bps
CheckV completeness	98.94% (High-quality)
CDS count	60
CDS density	90.11%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae	Total connections	35	Host agreement	77.14
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83 → CAG-83 sp900555735	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 98.94)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0031664_2	phrog_434	43.1	0.0000000000058	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0031664_2	UniRef90_B0PAM4	145.0	6.01003e-41	YqaJ domain-containing protein	N/A
structural_annotation	UHGV-0031664_2	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0031664_3	phrog_659	44.5	0.0000000000019	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0031664_3	UniRef90_A0A6N9QJT6	199.0	0	N/A	N/A
eggNOG-mapper	UHGV-0031664_3	33035.JPJF01000135_gene5082	134.0	9.65e-37	N/A	N/A
Pfam	UHGV-0031664_3	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-0031664_3	PF06378,TIGR00607,COG5055	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0031664_6	596152.DesU5LDRAFT_1910	95.5	1e-21	N/A	N/A
structural_annotation	UHGV-0031664_6	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
PHROG	UHGV-0031664_7	phrog_1468	52.0	0.0000000000000069	transcriptional repressor	transcription regulation
UniRef90	UHGV-0031664_7	UniRef90_A0A3Q0NDY7	48.5	0.0000062	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0031664_7	386043.lwe1198	47.0	0.00000421	Helix-turn-helix	N/A
Pfam	UHGV-0031664_7	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0031664_7	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0031664_8	PF21291,TIGR03070,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0031664_9	K22300	51.3	0.000000000000026	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0031664_9	phrog_8	44.2	0.0000000000034	transcriptional regulator	transcription regulation
UniRef90	UHGV-0031664_9	UniRef90_A0A3D3Y6C1	70.9	0.00000000000000924	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0031664_9	1095737.HMPREF1110_1418	54.3	0.0000000135	sequence-specific DNA binding	N/A
Pfam	UHGV-0031664_9	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0031664_9	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0031664_9	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0031664_10	NF007257,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0031664_11	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0031664_12	K14059	155.4	0	int; integrase	N/A
PHROG	UHGV-0031664_12	phrog_1	149.6	2.66247e-44	integrase	integration and excision
UniRef90	UHGV-0031664_12	UniRef90_A0A3D2HVQ9	288.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0031664_12	411467.BACCAP_00889	80.5	0.0000000000000508	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0031664_12	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0031664_12	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0031664_12	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0031664_13	1378168.N510_03079	60.1	0.0000000116	N/A	N/A
structural_annotation	UHGV-0031664_16	PF04545,MF_00245,TIGR02985,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0031664_17	phrog_14030	135.2	3.9e-40	N/A	unknown function
UniRef90	UHGV-0031664_17	UniRef90_A0A133ZYW3	155.0	1.59047e-42	Cell wall-binding repeat protein	N/A
eggNOG-mapper	UHGV-0031664_17	1095750.HMPREF9970_2291	149.0	6.59003e-41	repeat protein	N/A
COG	UHGV-0031664_17	COG5263	N/A	N/A	Glucan-binding domain (YG repeat)	N/A
PHROG	UHGV-0031664_18	phrog_443	62.4	1.2e-17	holin	lysis
UniRef90	UHGV-0031664_18	UniRef90_UPI0009B98E42	94.4	4.11e-24	holin	N/A
eggNOG-mapper	UHGV-0031664_18	1235797.C816_04172	89.4	6.29e-23	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0031664_18	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0031664_18	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0031664_19	phrog_937	60.5	3.3e-17	hemolysin	other
eggNOG-mapper	UHGV-0031664_19	1519439.JPJG01000023_gene533	50.1	0.00000146	N/A	N/A
UniRef90	UHGV-0031664_20	UniRef90_A0A417HW04	307.0	0	M23 family peptidase	N/A
eggNOG-mapper	UHGV-0031664_20	1408437.JNJN01000060_gene452	367.0	0	heme binding	N/A
COG	UHGV-0031664_20	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
eggNOG-mapper	UHGV-0031664_21	693746.OBV_01600	87.8	4.2e-16	N/A	N/A
eggNOG-mapper	UHGV-0031664_22	1235797.C816_04174	138.0	5.68e-39	N/A	N/A
eggNOG-mapper	UHGV-0031664_25	411473.RUMCAL_00420	67.0	0.00000000235	nuclear chromosome segregation	N/A
COG	UHGV-0031664_25	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
PHROG	UHGV-0031664_26	phrog_156	134.8	3.3e-40	portal protein	head and packaging
eggNOG-mapper	UHGV-0031664_26	693746.OBV_01670	599.0	0	N/A	N/A
structural_annotation	UHGV-0031664_26	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
UniRef90	UHGV-0031664_28	UniRef90_A0A4D7ASB8	513.0	0	N/A	N/A
eggNOG-mapper	UHGV-0031664_28	693746.OBV_01680	503.0	0	N/A	N/A
structural_annotation	UHGV-0031664_28	PF11134,MF_03027,NF010237,TIGR03511,COG2319	N/A	N/A	N/A	N/A
PHROG	UHGV-0031664_29	phrog_422	155.1	0	major head protein	head and packaging
UniRef90	UHGV-0031664_29	UniRef90_A0A6A8VJ17	334.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0031664_29	1408437.JNJN01000001_gene1710	243.0	0	N/A	N/A
Pfam	UHGV-0031664_29	PF13290	N/A	N/A	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
structural_annotation	UHGV-0031664_29	PF19821,PF13287,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0031664_30	phrog_14606	42.6	0.0000000000055	N/A	unknown function
eggNOG-mapper	UHGV-0031664_30	755731.Clo1100_2435	67.8	0.000000000365	N/A	N/A
eggNOG-mapper	UHGV-0031664_31	693746.OBV_01730	74.3	0.00000000000000399	N/A	N/A
structural_annotation	UHGV-0031664_31	PF11650	N/A	N/A	N/A	N/A
KOfam	UHGV-0031664_32	K06909	142.4	3.69943e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0031664_32	phrog_979	122.4	8.3e-38	terminase large subunit	head and packaging
UniRef90	UHGV-0031664_32	UniRef90_G4KR97	545.0	0	Terminase_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0031664_32	693746.OBV_01690	545.0	0	phage Terminase large subunit	N/A
Pfam	UHGV-0031664_32	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0031664_32	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0031664_32	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0031664_35	1160721.RBI_I00206	52.0	0.000000518	N/A	N/A
eggNOG-mapper	UHGV-0031664_36	1235802.C823_02864	63.5	0.000000000000349	N/A	N/A
structural_annotation	UHGV-0031664_37	PF03869,NF010256	N/A	N/A	N/A	N/A
PHROG	UHGV-0031664_38	phrog_15863	163.3	0	N/A	unknown function
UniRef90	UHGV-0031664_38	UniRef90_A0A1Y3R3M0	236.0	0	J domain-containing protein	N/A
eggNOG-mapper	UHGV-0031664_38	693746.OBV_01780	177.0	0	DnaJ molecular chaperone homology domain	N/A
COG	UHGV-0031664_38	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
structural_annotation	UHGV-0031664_40	PF17917	N/A	N/A	N/A	N/A
KOfam	UHGV-0031664_41	K01520	153.4	1.4013e-45	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0031664_41	phrog_135	138.1	4.39994e-41	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0031664_41	UniRef90_A0A3D3Y5Q7	248.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-0031664_41	887929.HMP0721_1278	144.0	1.98003e-42	dUTPase	N/A
Pfam	UHGV-0031664_41	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-0031664_41	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-0031664_41	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0031664_41	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0031664_43	1444310.JANV01000162_gene1216	114.0	3.04e-27	N/A	N/A
PHROG	UHGV-0031664_44	phrog_1770	55.4	0.0000000000000012	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0031664_44	536233.CLO_1822	150.0	4.76441e-44	N/A	N/A
structural_annotation	UHGV-0031664_44	PF02075,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
UniRef90	UHGV-0031664_45	UniRef90_UPI0019D1E2CF	259.0	0	FAD-dependent thymidylate synthase	N/A
eggNOG-mapper	UHGV-0031664_45	1410632.JHWW01000006_gene695	205.0	0	N/A	N/A
Pfam	UHGV-0031664_45	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
structural_annotation	UHGV-0031664_45	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-0031664_50	phrog_5781	77.3	2e-22	N/A	unknown function
UniRef90	UHGV-0031664_50	UniRef90_A0A413FXK8	120.0	1.73e-33	N/A	N/A
eggNOG-mapper	UHGV-0031664_50	573061.Clocel_3558	93.6	1.32e-23	N/A	N/A
Pfam	UHGV-0031664_50	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-0031664_50	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-0031664_50	PF14359,MF_03036,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0031664_51	phrog_3136	140.8	3.99931e-42	N/A	unknown function
UniRef90	UHGV-0031664_51	UniRef90_UPI001C02A61B	124.0	9.91e-33	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0031664_51	693746.OBV_25380	76.6	0.0000000000000101	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0031664_51	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0031664_51	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0031664_52	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-0031664_56	phrog_15768	50.0	0.000000000000054	N/A	unknown function
UniRef90	UHGV-0031664_56	UniRef90_A0A7C1PUJ6	102.0	5.43e-23	N/A	N/A
eggNOG-mapper	UHGV-0031664_56	588581.Cpap_1283	63.2	0.0000000061	DnaD domain protein	N/A
COG	UHGV-0031664_56	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0031664_56	PF07120,COG3756	N/A	N/A	N/A	N/A
KOfam	UHGV-0031664_57	K03111	129.8	3.4e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0031664_57	phrog_44	134.8	6.2e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0031664_57	UniRef90_A0A810QFR8	178.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0031664_57	693746.OBV_12860	167.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0031664_57	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0031664_57	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0031664_57	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0031664_57	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0031664_57	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0031664_59	phrog_7370	56.1	5.3e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0031664_59	UniRef90_A0A3D1LDS4	150.0	4.2039e-45	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0031664_59	1235800.C819_02254	66.2	0.00000000000144	HNH nucleases	N/A
Pfam	UHGV-0031664_59	PF01844	N/A	N/A	HNH endonuclease	HNH
UniRef90	UHGV-0031664_60	UniRef90_UPI000C7BF263	115.0	2.46e-30	recombination protein NinB	N/A
eggNOG-mapper	UHGV-0031664_60	445972.ANACOL_01825	124.0	1.71e-34	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0031664	Yes	39,780	53	99	1