vOTU vOTU-065621

vOTU: vOTU-065621

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-065621
Number of genomes	5
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → CAG-882 → CAG-882 sp003486385
Taxonomy (UHGV)	vFAM-00062 → vSUBFAM-02440 → vGENUS-02970 → vSUBGEN-37322 → vOTU-065621
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → CAG-882 → CAG-882 sp003486385
Host range breadth	Species
Lifestyle	temperate (Evidence: geNomad)

Representative genome
Genome ID	UHGV-0130426
Biosample ID	SAMN00792096
Genome length (bp)	36,240 bps
CheckV completeness	90.56% (High-quality)
CDS count	52
CDS density	95.31%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → CAG-882 → CAG-882 sp003486385	Total connections	105	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → CAG-882 → CAG-882 sp003486385	Total connections	92	Host agreement	96.74

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 90.56)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0130426_1	phrog_3364	115.2	5.9e-34	N/A	unknown function
UniRef90	UHGV-0130426_1	UniRef90_A0A417PV90	186.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0130426_1	1280663.ATVR01000003_gene186	182.0	0	N/A	N/A
Pfam	UHGV-0130426_1	PF02518	N/A	N/A	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	HATPase_c
structural_annotation	UHGV-0130426_1	PF02518,PF01740,MF_00637,TIGR01925,TIGR00377,COG2172	N/A	N/A	N/A	N/A
PHROG	UHGV-0130426_2	phrog_5816	54.1	0.0000000000000018	N/A	unknown function
UniRef90	UHGV-0130426_2	UniRef90_A0A2H4J4X6	151.0	1.4013e-45	N/A	N/A
eggNOG-mapper	UHGV-0130426_2	1280663.ATVR01000003_gene187	117.0	9.83e-33	N/A	N/A
Pfam	UHGV-0130426_2	PF14213	N/A	N/A	N/A	DUF4325
structural_annotation	UHGV-0130426_2	PF14213	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0130426_3	PF16767,COG5278	N/A	N/A	N/A	N/A
PHROG	UHGV-0130426_4	phrog_4611	54.1	9.1e-16	minor head protein	head and packaging
eggNOG-mapper	UHGV-0130426_4	1179226.AJXO01000005_gene1853	74.7	0.0000000000261	Phage minor capsid protein 2	N/A
Pfam	UHGV-0130426_4	PF09397	N/A	N/A	Ftsk gamma domain	FtsK_gamma
Pfam	UHGV-0130426_4	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
PHROG	UHGV-0130426_5	phrog_87	91.8	5.6e-27	metallo-protease	other
UniRef90	UHGV-0130426_5	UniRef90_A0A350VV99	199.0	0	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-0130426_5	556261.HMPREF0240_01267	153.0	1.4013e-45	Zn peptidase	N/A
Pfam	UHGV-0130426_5	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0130426_5	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0130426_5	PF06114	N/A	N/A	N/A	N/A
KOfam	UHGV-0130426_6	K22300	59.8	6.3e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0130426_6	phrog_8	81.1	2e-23	transcriptional regulator	transcription regulation
UniRef90	UHGV-0130426_6	UniRef90_A0A3C1X9T6	103.0	5.02e-26	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0130426_6	1163671.JAGI01000002_gene3058	90.5	3.84e-21	Helix-turn-helix domain protein	N/A
Pfam	UHGV-0130426_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0130426_6	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0130426_6	PF13560,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0130426_7	UniRef90_A0A1M7SN53	95.5	1.38e-24	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0130426_7	1121335.Clst_0370	94.7	4.67e-25	N/A	N/A
Pfam	UHGV-0130426_7	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0130426_7	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0130426_14	877424.ATWC01000016_gene168	53.1	0.0000000669	N/A	N/A
Pfam	UHGV-0130426_14	PF20323	N/A	N/A	N/A	DUF6618
structural_annotation	UHGV-0130426_14	PF20323	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0130426_16	PF07875	N/A	N/A	N/A	N/A
PHROG	UHGV-0130426_17	phrog_32437	74.7	1.3e-21	N/A	unknown function
UniRef90	UHGV-0130426_17	UniRef90_A0A350VVB0	337.0	0	SLT domain-containing protein	N/A
Pfam	UHGV-0130426_17	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
COG	UHGV-0130426_17	COG0741	N/A	N/A	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	N/A
structural_annotation	UHGV-0130426_17	PF01464,MF_01616,NF011856,COG0741	N/A	N/A	N/A	N/A
PHROG	UHGV-0130426_19	phrog_3584	163.5	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0130426_19	1235800.C819_02258	305.0	0	N/A	N/A
structural_annotation	UHGV-0130426_19	PF21578,NF041486	N/A	N/A	N/A	N/A
KOfam	UHGV-0130426_20	K03469	78.8	9.8e-23	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0130426_20	phrog_531	81.8	8.2e-24	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0130426_20	UniRef90_A0A350VVB3	297.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0130426_20	986075.CathTA2_0778	88.2	2.83e-20	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-0130426_20	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0130426_20	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0130426_20	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0130426_21	411902.CLOBOL_05699	164.0	0	N/A	N/A
PHROG	UHGV-0130426_22	phrog_4433	63.3	2.4e-18	N/A	unknown function
eggNOG-mapper	UHGV-0130426_22	742733.HMPREF9469_00220	94.0	2.27e-21	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0130426_22	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0130426_22	PF12120,NF000318	N/A	N/A	N/A	N/A
PHROG	UHGV-0130426_23	phrog_8470	237.7	0	N/A	unknown function
UniRef90	UHGV-0130426_23	UniRef90_UPI001D0E6B3F	590.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0130426_23	411902.CLOBOL_05697	494.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0130426_23	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0130426_23	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0130426_25	phrog_15077	102.8	4.7e-31	N/A	unknown function
UniRef90	UHGV-0130426_25	UniRef90_A0A3A6HZA9	199.0	0	N/A	N/A
eggNOG-mapper	UHGV-0130426_25	1280698.AUJS01000007_gene1019	211.0	0	N/A	N/A
structural_annotation	UHGV-0130426_25	PF11300,NF033725	N/A	N/A	N/A	N/A
UniRef90	UHGV-0130426_26	UniRef90_A0A417WAJ1	123.0	4.64e-34	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0130426_26	1235800.C819_02254	127.0	2.67e-36	HNH nucleases	N/A
PHROG	UHGV-0130426_27	phrog_478	118.5	3.4e-35	site-specific recombination directionality factor RDF	integration and excision
eggNOG-mapper	UHGV-0130426_27	1111121.HMPREF1247_0834	104.0	5.48e-27	N/A	N/A
KOfam	UHGV-0130426_29	K03111	124.5	1.4e-36	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0130426_29	phrog_44	126.1	2.9e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0130426_29	UniRef90_A0A350VVC0	274.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0130426_29	679200.HMPREF9333_00481	194.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0130426_29	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0130426_29	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0130426_29	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0130426_29	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0130426_29	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0130426_31	phrog_309	164.9	0	terminase small subunit	head and packaging
UniRef90	UHGV-0130426_31	UniRef90_UPI00100A781C	175.0	0	transposase	N/A
eggNOG-mapper	UHGV-0130426_31	1567014.A0A0A7RTX1_9VIRU	161.0	0	N/A	N/A
structural_annotation	UHGV-0130426_31	PF07141	N/A	N/A	N/A	N/A
KOfam	UHGV-0130426_32	K06909	121.4	1.1e-35	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0130426_32	phrog_2	154.3	1.4013e-45	terminase large subunit	head and packaging
UniRef90	UHGV-0130426_32	UniRef90_A0A350VVC2	918.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0130426_32	1120998.AUFC01000030_gene2231	385.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0130426_32	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0130426_32	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0130426_32	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0130426_32	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0130426_33	phrog_533	197.7	0	portal protein	head and packaging
UniRef90	UHGV-0130426_33	UniRef90_A0A3E3HWH0	458.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0130426_33	718252.FP2_06700	131.0	1.97e-30	N/A	N/A
structural_annotation	UHGV-0130426_33	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0130426_34	phrog_581	221.9	0	minor head protein	head and packaging
UniRef90	UHGV-0130426_34	UniRef90_A0A6L5YIK0	344.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0130426_34	1226322.HMPREF1545_00046	134.0	6.96e-31	Phage minor capsid protein 2	N/A
Pfam	UHGV-0130426_34	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0130426_34	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0130426_34	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0130426_36	phrog_194	80.4	2.9e-23	head scaffolding protein	head and packaging
UniRef90	UHGV-0130426_36	UniRef90_A0A173RNU4	178.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0130426_36	742765.HMPREF9457_02126	100.0	6.4e-24	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0130426_36	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0130426_36	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0130426_37	phrog_212	262.3	0	major head protein	head and packaging
UniRef90	UHGV-0130426_37	UniRef90_A0A350VVC8	629.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0130426_37	318464.IO99_00580	369.0	0	N/A	N/A
structural_annotation	UHGV-0130426_37	PF05065,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0130426_38	phrog_541	47.7	0.00000000000029	head-tail adaptor	connector
PHROG	UHGV-0130426_39	phrog_3366	80.9	1.7e-23	N/A	unknown function
Pfam	UHGV-0130426_39	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0130426_39	PF20536,TIGR02126	N/A	N/A	N/A	N/A
PHROG	UHGV-0130426_40	phrog_556	67.9	1.2e-19	minor head protein	head and packaging
UniRef90	UHGV-0130426_40	UniRef90_UPI00067E9657	104.0	5.83e-26	minor capsid protein	N/A
eggNOG-mapper	UHGV-0130426_40	1235790.C805_00048	67.4	0.00000000000571	N/A	N/A
Pfam	UHGV-0130426_40	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0130426_40	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0130426_41	phrog_3266	83.5	2.1e-24	tail completion	connector
UniRef90	UHGV-0130426_41	UniRef90_A0A416DT59	58.9	0.0000000237	Chloramphenicol resistance protein	N/A
eggNOG-mapper	UHGV-0130426_41	573061.Clocel_3537	65.1	0.0000000000166	N/A	N/A
structural_annotation	UHGV-0130426_41	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0130426_42	phrog_3099	134.3	7.69999e-40	N/A	unknown function
eggNOG-mapper	UHGV-0130426_42	1235790.C805_00082	132.0	3.38e-37	N/A	N/A
structural_annotation	UHGV-0130426_42	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0130426_43	phrog_11299	44.4	0.0000000000028	N/A	unknown function
eggNOG-mapper	UHGV-0130426_43	1235790.C805_00083	70.9	0.000000000000114	N/A	N/A
structural_annotation	UHGV-0130426_43	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0130426_44	phrog_706	123.8	1.2e-36	N/A	unknown function
UniRef90	UHGV-0130426_44	UniRef90_R5H1B0	140.0	1.14e-38	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0130426_44	1235790.C805_00084	122.0	1.61e-32	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0130426_44	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0130426_44	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0130426_45	phrog_1535	126.1	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0130426_45	33035.JPJF01000043_gene1003	89.0	0.00000000000000402	phage tail tape measure protein	N/A
COG	UHGV-0130426_45	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0130426_46	phrog_1194	63.9	2.5e-18	N/A	unknown function
eggNOG-mapper	UHGV-0130426_46	1235790.C805_00088	195.0	0	N/A	N/A
Pfam	UHGV-0130426_46	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0130426_46	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0130426_47	phrog_18190	477.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0130426_47	1235790.C805_00089	359.0	0	N/A	N/A
structural_annotation	UHGV-0130426_47	PF05113,PF13884,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0130426_50	phrog_9428	150.3	0	N/A	unknown function
UniRef90	UHGV-0130426_50	UniRef90_A0A3A6GVM2	139.0	2.06001e-40	Serine/threonine protein kinase	N/A
eggNOG-mapper	UHGV-0130426_50	411470.RUMGNA_00253	135.0	2.27e-39	N/A	N/A
eggNOG-mapper	UHGV-0130426_51	411470.RUMGNA_00254	111.0	2.91e-31	N/A	N/A
KOfam	UHGV-0130426_52	K19304	87.7	1.8e-25	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-0130426_52	phrog_3578	69.1	6.9e-20	metallo-endopeptidase	other
UniRef90	UHGV-0130426_52	UniRef90_A0A350RPP3	119.0	2.17e-29	SPOR domain-containing protein	N/A
eggNOG-mapper	UHGV-0130426_52	511680.BUTYVIB_00396	130.0	3.63e-34	peptidase	N/A
Pfam	UHGV-0130426_52	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
Pfam	UHGV-0130426_52	PF05036	N/A	N/A	SPOR domain	SPOR
COG	UHGV-0130426_52	COG4942	N/A	N/A	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	N/A
structural_annotation	UHGV-0130426_52	PF01551,PF05036,MF_02022,NF040883,NF008641,COG0739	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0130426	Yes	36,240	44	91	1
UHGV-0109913	No	30,144	45	75	1
UHGV-1732756	No	15,285	46	39	1
UHGV-0872284	No	11,255	46	20	1
UHGV-1624799	No	11,504	45	20	1