vOTU vOTU-065755

vOTU: vOTU-065755

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-065755
Number of genomes	3
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00070 → vSUBFAM-03712 → vGENUS-05702 → vSUBGEN-24929 → vOTU-065755
Host lineage
Host range breadth
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-1494806
Biosample ID	N/A
Genome length (bp)	45,265 bps
CheckV completeness	98.15% (High-quality)
CDS count	50
CDS density	90.64%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method
CRISPR-predicted host lineage	Total connections	Host agreement
PHIST-predicted host lineage	Total connections	Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 98.15)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
Pfam	UHGV-1494806_2	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
KOfam	UHGV-1494806_3	K20283	44.5	0.000000000000025	GOLGA4; golgin subfamily A member 4	N/A
PHROG	UHGV-1494806_3	phrog_4211	153.5	1.4013e-45	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1494806_3	1291050.JAGE01000002_gene3296	172.0	6.34001e-40	Phage-related minor tail protein	N/A
Pfam	UHGV-1494806_3	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1494806_3	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-1494806_3	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1494806_4	PF14870,PF19266,PF19077,PF06051,MF_01348,MF_04116,NF010237,TIGR01633,NF032891,COG4447,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1494806_5	phrog_1887	196.0	0	tail protein	tail
eggNOG-mapper	UHGV-1494806_5	272562.CA_C1114	93.2	7.96e-18	N/A	N/A
structural_annotation	UHGV-1494806_5	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1494806_6	PF05606,MF_00075,TIGR00008,COG0361	N/A	N/A	N/A	N/A
KOfam	UHGV-1494806_7	K04763	193.4	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-1494806_7	phrog_1	153.0	2.8026e-45	integrase	integration and excision
UniRef90	UHGV-1494806_7	UniRef90_A0A1C5M747	118.0	2.93e-27	Tyrosine recombinase XerC	N/A
eggNOG-mapper	UHGV-1494806_7	1504823.CCMM01000008_gene869	118.0	4.92e-28	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-1494806_7	PF02899	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
Pfam	UHGV-1494806_7	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1494806_7	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1494806_7	PF00589,PF02899,MF_01808,TIGR02225,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1494806_8	phrog_1709	55.5	0.000000000000001	N/A	unknown function
UniRef90	UHGV-1494806_8	UniRef90_A0A316NCX3	70.9	0.0000000000000441	Immunoglobulin	N/A
eggNOG-mapper	UHGV-1494806_8	97138.C820_02869	60.8	0.0000000000575	N/A	N/A
structural_annotation	UHGV-1494806_8	PF21076	N/A	N/A	N/A	N/A
KOfam	UHGV-1494806_9	K04487	339.7	0	iscS, NFS1; cysteine desulfurase [EC:2.8.1.7]	N/A
PHROG	UHGV-1494806_9	phrog_12787	281.0	0	N/A	unknown function
UniRef90	UHGV-1494806_9	UniRef90_A0A846QID3	214.0	0	Cysteine desulfurase	N/A
eggNOG-mapper	UHGV-1494806_9	1120973.AQXL01000110_gene1005	213.0	0	Aminotransferase class-V	N/A
PADLOC	UHGV-1494806_9	SspA_00001	283.5	0	SspA	SSP
Pfam	UHGV-1494806_9	PF00266	N/A	N/A	Aminotransferase class-V	Aminotran_5
COG	UHGV-1494806_9	COG1104	N/A	N/A	Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family	N/A
structural_annotation	UHGV-1494806_9	PF00266,MF_00331,TIGR03403,COG1104	N/A	N/A	N/A	N/A
KOfam	UHGV-1494806_10	K07496	192.0	0	K07496; putative transposase	N/A
PHROG	UHGV-1494806_10	phrog_506	179.4	0	transposase	integration and excision
UniRef90	UHGV-1494806_10	UniRef90_E0RYZ3	696.0	0	Transposase IS200/IS605 family	N/A
eggNOG-mapper	UHGV-1494806_10	1280685.AUKC01000077_gene3304	708.0	0	Transposase, IS605 OrfB family	N/A
PADLOC	UHGV-1494806_10	V_U3	121.0	1.7e-35	CAS-V-F; effector__SPE	CRISPR-CAS
Pfam	UHGV-1494806_10	PF01385	N/A	N/A	Probable transposase	OrfB_IS605
Pfam	UHGV-1494806_10	PF07282	N/A	N/A	Putative transposase DNA-binding domain	OrfB_Zn_ribbon
NCBIFam	UHGV-1494806_10	NF040570.1	N/A	N/A	RNA-guided endonuclease TnpB family protein	N/A
COG	UHGV-1494806_10	COG0675	N/A	N/A	Transposase	N/A
structural_annotation	UHGV-1494806_10	PF07282,PF01385,NF038281,COG0675	N/A	N/A	N/A	N/A
PHROG	UHGV-1494806_11	phrog_4973	68.0	1.2e-19	N/A	unknown function
UniRef90	UHGV-1494806_11	UniRef90_A0A3D3Y0P8	75.5	4.19e-16	DNA-binding protein	N/A
Pfam	UHGV-1494806_11	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-1494806_11	PF14090,TIGR00373,COG4738	N/A	N/A	N/A	N/A
KOfam	UHGV-1494806_12	K01449	60.9	2.5e-17	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1494806_12	phrog_30550	175.2	0	N/A	unknown function
UniRef90	UHGV-1494806_12	UniRef90_A0A6N9PX25	157.0	7.00649e-45	Cell wall hydrolase	N/A
eggNOG-mapper	UHGV-1494806_12	1519439.JPJG01000077_gene920	125.0	1.52e-34	Cell Wall Hydrolase	N/A
Pfam	UHGV-1494806_12	PF07486	N/A	N/A	Cell Wall Hydrolase	Hydrolase_2
structural_annotation	UHGV-1494806_12	COG3773	N/A	N/A	N/A	N/A
PHROG	UHGV-1494806_13	phrog_1770	94.5	1.2e-27	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1494806_13	UniRef90_F2I359	99.0	2.13e-23	Crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1494806_13	1002672.SAR11G3_01424	99.0	3.58e-24	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	N/A
COG	UHGV-1494806_13	COG0817	N/A	N/A	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	N/A
structural_annotation	UHGV-1494806_13	PF16921,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
KOfam	UHGV-1494806_15	K07455	171.4	0	recT; recombination protein RecT	N/A
PHROG	UHGV-1494806_15	phrog_148	197.7	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1494806_15	UniRef90_A8RCV0	261.0	0	Recombinase, phage RecT family	N/A
eggNOG-mapper	UHGV-1494806_15	428127.EUBDOL_01509	261.0	0	RecT family	N/A
Pfam	UHGV-1494806_15	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1494806_15	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-1494806_15	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1494806_15	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-1494806_16	phrog_674	69.6	4.6e-24	N/A	unknown function
eggNOG-mapper	UHGV-1494806_16	1423780.LOT_2201	56.2	0.0000021	N/A	N/A
Pfam	UHGV-1494806_16	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1494806_16	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-1494806_17	phrog_434	133.3	1.9e-39	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1494806_17	UniRef90_UPI001D017D87	147.0	8.14995e-41	YqaJ viral recombinase family protein	N/A
eggNOG-mapper	UHGV-1494806_17	1200792.AKYF01000014_gene4307	75.9	0.000000000000177	YqaJ-like viral recombinase domain	N/A
Pfam	UHGV-1494806_17	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-1494806_17	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-1494806_17	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-1494806_17	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-1494806_18	K03111	92.6	7.2e-27	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1494806_18	phrog_44	89.8	3.8e-26	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1494806_18	UniRef90_A0A510KRC5	92.4	1.06e-21	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1494806_18	888055.HMPREF9015_02279	84.7	3.12e-19	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1494806_18	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1494806_18	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1494806_18	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1494806_18	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1494806_18	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1494806_20	phrog_323	40.3	0.00000000005	endonuclease	DNA, RNA and nucleotide metabolism
PHROG	UHGV-1494806_22	phrog_3301	89.5	3e-26	pyrophosphatase	other
eggNOG-mapper	UHGV-1494806_22	411459.RUMOBE_01042	119.0	1.01e-33	Mazg nucleotide pyrophosphohydrolase	N/A
COG	UHGV-1494806_22	COG1694	N/A	N/A	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	N/A
structural_annotation	UHGV-1494806_22	COG1694	N/A	N/A	N/A	N/A
KOfam	UHGV-1494806_23	K07482	42.6	0.0000000000076	K07482; transposase, IS30 family	N/A
PHROG	UHGV-1494806_23	phrog_11420	77.0	1.5e-22	DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1494806_23	UniRef90_R6CFH9	67.0	0.00000000000109	HTH_38 domain-containing protein	N/A
eggNOG-mapper	UHGV-1494806_23	1519439.JPJG01000077_gene919	66.6	0.000000000000259	Helix-turn-helix domain	N/A
Pfam	UHGV-1494806_23	PF13936	N/A	N/A	Helix-turn-helix domain	HTH_38
structural_annotation	UHGV-1494806_23	PF04218	N/A	N/A	N/A	N/A
KOfam	UHGV-1494806_24	K07482	315.5	0	K07482; transposase, IS30 family	N/A
PHROG	UHGV-1494806_24	phrog_4646	400.2	0	transposase	integration and excision
UniRef90	UHGV-1494806_24	UniRef90_UPI001F3761DC	405.0	0	IS30 family transposase	N/A
eggNOG-mapper	UHGV-1494806_24	537007.BLAHAN_04266	347.0	0	COG COG2826 Transposase and inactivated derivatives, IS30 family	N/A
Pfam	UHGV-1494806_24	PF13936	N/A	N/A	Helix-turn-helix domain	HTH_38
NCBIFam	UHGV-1494806_24	NF033563.0	N/A	N/A	IS30 family transposase	N/A
COG	UHGV-1494806_24	COG2826	N/A	N/A	Transposase and inactivated derivatives, IS30 family	N/A
structural_annotation	UHGV-1494806_24	PF04937,PF13936,MF_00582,NF033563,COG2826	N/A	N/A	N/A	N/A
PHROG	UHGV-1494806_26	phrog_15503	75.8	3.5e-22	N/A	unknown function
UniRef90	UHGV-1494806_26	UniRef90_UPI0012E9BB1B	198.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1494806_26	1308863.U5J9B2_9CAUD	153.0	6.18e-37	N/A	N/A
structural_annotation	UHGV-1494806_26	PF04466,PF17289,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1494806_28	phrog_2739	83.2	9.6e-26	portal protein	head and packaging
structural_annotation	UHGV-1494806_28	PF07230,MF_04135,TIGR01537,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1494806_29	phrog_3313	58.5	8.9e-17	N/A	unknown function
structural_annotation	UHGV-1494806_29	PF09979,TIGR01543,COG3740	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1494806_31	PF03864,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1494806_33	phrog_1129	68.2	7.5e-20	holin	lysis
UniRef90	UHGV-1494806_33	UniRef90_A0A4Q7PP32	121.0	3.94e-34	Holin family Hol44 protein (Superfamily V)	N/A
eggNOG-mapper	UHGV-1494806_33	742740.HMPREF9474_03522	119.0	3.61e-34	N/A	N/A
Pfam	UHGV-1494806_33	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1494806_33	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-1494806_34	phrog_4105	64.5	1.5e-18	N/A	unknown function
eggNOG-mapper	UHGV-1494806_34	706434.HMPREF9429_00642	64.3	0.0000000000066	N/A	N/A
PHROG	UHGV-1494806_36	phrog_13589	202.1	0	N/A	unknown function
eggNOG-mapper	UHGV-1494806_36	742733.HMPREF9469_05009	239.0	0	N/A	N/A
PHROG	UHGV-1494806_37	phrog_35892	59.3	2e-23	N/A	unknown function
UniRef90	UHGV-1494806_37	UniRef90_UPI001F37D978	171.0	4.2039e-45	leucine-rich repeat domain-containing protein	N/A
eggNOG-mapper	UHGV-1494806_37	471875.RUMLAC_02240	126.0	5.47e-29	dockerin type I repeat-containing domain protein	N/A
Pfam	UHGV-1494806_37	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
COG	UHGV-1494806_37	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1494806_37	PF13306,NF041351	N/A	N/A	N/A	N/A
KOfam	UHGV-1494806_39	K01447	46.9	0.00000000000044	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1494806_39	phrog_7698	176.0	0	endolysin	lysis
UniRef90	UHGV-1494806_39	UniRef90_A0A3C1LWK8	192.0	0	SPOR domain-containing protein	N/A
eggNOG-mapper	UHGV-1494806_39	293826.Amet_2548	184.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1494806_39	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-1494806_39	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-1494806_41	PF09646	N/A	N/A	N/A	N/A
PHROG	UHGV-1494806_43	phrog_16444	47.3	0.00000000000015	N/A	unknown function
COG	UHGV-1494806_43	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1494806_43	PF02368,PF18957,MF_04116,NF040788,COG3291,COG5614	N/A	N/A	N/A	N/A
Pfam	UHGV-1494806_46	PF02368	N/A	N/A	Bacterial Ig-like domain (group 2)	Big_2
structural_annotation	UHGV-1494806_46	PF06488,PF02368,TIGR01603,COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1494806_47	TIGR01725	N/A	N/A	N/A	N/A
Pfam	UHGV-1494806_48	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-1494806_49	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1494806	Yes	45,265	41	98	1
UHGV-0080338	No	30,020	42	65	1
UHGV-1409878	No	25,246	43	55	1