vOTU vOTU-066000

vOTU: vOTU-066000

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-066000
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00013 → vGENUS-00190 → vSUBGEN-31558 → vOTU-066000
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0177429
Biosample ID	SAMN09781789
Genome length (bp)	40,027 bps
CheckV completeness	94.96% (High-quality)
CDS count	70
CDS density	91.44%
tRNA count	5
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	1121	Host agreement	98.57
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium → Faecalibacterium prausnitzii_G	Total connections	5	Host agreement	80

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 94.96)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0177429_2	phrog_606	90.0	2.5e-26	terminase small subunit	head and packaging
UniRef90	UHGV-0177429_2	UniRef90_UPI001C02EFD1	327.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0177429_2	397290.C810_05185	142.0	1.84999e-40	DNA-packaging protein gp3	N/A
Pfam	UHGV-0177429_2	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0177429_2	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-0177429_3	K06909	142.2	5.09933e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0177429_3	phrog_10250	171.5	0	N/A	unknown function
UniRef90	UHGV-0177429_3	UniRef90_A0A844D8I4	845.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0177429_3	411490.ANACAC_00783	488.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0177429_3	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0177429_3	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0177429_3	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0177429_3	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0177429_3	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0177429_4	phrog_64	127.0	7.3e-38	portal protein	head and packaging
UniRef90	UHGV-0177429_4	UniRef90_A0A6N7TNT3	873.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0177429_4	642492.Clole_2764	82.0	0.0000000000000734	phage portal protein, SPP1	N/A
Pfam	UHGV-0177429_4	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0177429_4	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0177429_5	phrog_2468	79.0	4e-23	head morphogenesis	head and packaging
UniRef90	UHGV-0177429_5	UniRef90_A0A6N7TLR7	605.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0177429_5	1504822.CCNO01000013_gene286	109.0	2.88e-23	cell adhesion	N/A
Pfam	UHGV-0177429_5	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0177429_5	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0177429_5	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0177429_7	phrog_8680	199.4	0	N/A	unknown function
UniRef90	UHGV-0177429_7	UniRef90_A0A844D688	454.0	0	N/A	N/A
eggNOG-mapper	UHGV-0177429_7	1423790.BN53_04265	177.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
Pfam	UHGV-0177429_7	PF14386	N/A	N/A	N/A	DUF4417
COG	UHGV-0177429_7	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0177429_7	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-0177429_9	phrog_5	49.7	0.000000000000094	tail completion or Neck1 protein	connector
UniRef90	UHGV-0177429_9	UniRef90_A0A6N7TNP6	291.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0177429_9	929506.CbC4_1219	90.1	5.98e-21	N/A	N/A
Pfam	UHGV-0177429_9	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0177429_9	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0177429_12	phrog_544	139.0	3.80004e-41	major head protein	head and packaging
UniRef90	UHGV-0177429_12	UniRef90_R0BKA1	436.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0177429_12	476272.RUMHYD_01776	321.0	0	N/A	N/A
structural_annotation	UHGV-0177429_12	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0177429_14	phrog_17977	41.2	0.000000000025	N/A	unknown function
structural_annotation	UHGV-0177429_14	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0177429_15	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-0177429_16	phrog_885	57.7	1.5e-16	major tail protein	tail
eggNOG-mapper	UHGV-0177429_16	1504822.CCNO01000012_gene492	98.6	4.91e-23	N/A	N/A
structural_annotation	UHGV-0177429_16	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0177429_19	phrog_28775	125.9	1.6e-37	tail length tape measure protein	tail
UniRef90	UHGV-0177429_19	UniRef90_A0A844DDD5	650.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-0177429_19	1492737.FEM08_12070	142.0	2.13e-32	tape measure	N/A
Pfam	UHGV-0177429_19	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0177429_19	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0177429_19	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0177429_19	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0177429_20	phrog_3558	274.0	0	tail protein	tail
UniRef90	UHGV-0177429_20	UniRef90_UPI001C01D15B	680.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0177429_20	1120933.ATUY01000002_gene164	155.0	3.25e-37	Prophage endopeptidase tail	N/A
Pfam	UHGV-0177429_20	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-0177429_20	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0177429_20	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0177429_21	1235792.C808_00094	87.8	7.63e-19	phage tail	N/A
COG	UHGV-0177429_21	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0177429_21	PF05709,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0177429_23	phrog_10993	145.0	0	Hoc-like head decoration	head and packaging
UniRef90	UHGV-0177429_23	UniRef90_A0A1Q6KPN8	211.0	0	N/A	N/A
eggNOG-mapper	UHGV-0177429_23	718252.FP2_16970	195.0	0	N/A	N/A
Pfam	UHGV-0177429_23	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0177429_23	PF19789,PF18911	N/A	N/A	N/A	N/A
PHROG	UHGV-0177429_24	phrog_29248	44.8	0.0000000000021	N/A	unknown function
UniRef90	UHGV-0177429_25	UniRef90_A0A6A8KSZ5	104.0	1.49e-28	XkdX family protein	N/A
eggNOG-mapper	UHGV-0177429_25	718252.FP2_16990	104.0	2.49e-29	Phage uncharacterised protein (Phage_XkdX)	N/A
Pfam	UHGV-0177429_25	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
structural_annotation	UHGV-0177429_25	PF09693	N/A	N/A	N/A	N/A
KOfam	UHGV-0177429_26	K07273	157.5	0	acm; lysozyme	N/A
PHROG	UHGV-0177429_26	phrog_291	107.2	1.9e-31	endolysin	lysis
UniRef90	UHGV-0177429_26	UniRef90_A0A564U0D3	441.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0177429_26	718252.FP2_04890	246.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0177429_26	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0177429_26	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0177429_26	PF01183,NF007404,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0177429_28	phrog_15303	75.0	8.5e-22	N/A	unknown function
structural_annotation	UHGV-0177429_30	PF07374,MF_00245,NF001072,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-0177429_31	K23779	55.2	0.0000000000000018	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-0177429_31	phrog_1373	42.8	0.0000000000074	transcriptional regulator	transcription regulation
Pfam	UHGV-0177429_31	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0177429_31	COG1309	N/A	N/A	DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA	N/A
structural_annotation	UHGV-0177429_31	PF01381,TIGR03070,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0177429_33	phrog_3754	98.4	7.2e-29	N/A	unknown function
eggNOG-mapper	UHGV-0177429_33	1235790.C805_00054	112.0	1.92e-30	N/A	N/A
PHROG	UHGV-0177429_34	phrog_21718	88.0	1.2e-25	N/A	unknown function
eggNOG-mapper	UHGV-0177429_34	397290.C810_05210	81.6	2.07e-17	N/A	N/A
PHROG	UHGV-0177429_35	phrog_22984	70.3	2.8e-20	N/A	unknown function
PHROG	UHGV-0177429_36	phrog_16490	193.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0177429_36	397290.C810_01328	142.0	1.44e-37	N/A	N/A
PHROG	UHGV-0177429_38	phrog_20016	207.3	0	N/A	unknown function
UniRef90	UHGV-0177429_38	UniRef90_A0A285PT46	218.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0177429_38	1226322.HMPREF1545_00077	188.0	0	N/A	N/A
structural_annotation	UHGV-0177429_38	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0177429_39	PF12510	N/A	N/A	N/A	N/A
KOfam	UHGV-0177429_41	K14059	137.5	1.7e-40	int; integrase	N/A
PHROG	UHGV-0177429_41	phrog_1	164.0	0	integrase	integration and excision
UniRef90	UHGV-0177429_41	UniRef90_A0A6N7TNQ4	712.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0177429_41	411471.SUBVAR_05137	259.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0177429_41	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0177429_41	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0177429_41	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0177429_42	UniRef90_A0A6N7TLT0	207.0	0	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0177429_42	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0177429_42	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0177429_45	phrog_888	64.0	2.6e-34	N/A	unknown function
UniRef90	UHGV-0177429_45	UniRef90_A0A6N7TMA2	411.0	0	SHOCT domain-containing protein	N/A
eggNOG-mapper	UHGV-0177429_45	1292035.H476_2311	79.3	0.00000000000000716	Short C-terminal domain	N/A
Pfam	UHGV-0177429_45	PF14471	N/A	N/A	N/A	DUF4428
Pfam	UHGV-0177429_45	PF09851	N/A	N/A	Short C-terminal domain	SHOCT
structural_annotation	UHGV-0177429_45	PF15947,PF14471	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0177429_48	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0177429_49	phrog_8	44.1	0.000000000005	transcriptional regulator	transcription regulation
UniRef90	UHGV-0177429_49	UniRef90_UPI001C009F10	112.0	2.97e-31	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0177429_49	1268072.PSAB_01325	52.4	0.0000000263	Transcriptional regulator	N/A
Pfam	UHGV-0177429_49	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0177429_49	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0177429_49	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0177429_50	phrog_463	226.5	0	anti-repressor	transcription regulation
UniRef90	UHGV-0177429_50	UniRef90_UPI00137B411D	279.0	0	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-0177429_50	411490.ANACAC_00813	233.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0177429_50	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0177429_50	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-0177429_50	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0177429_50	PF10552,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0177429_51	1121865.OMW_01950	72.4	9.24e-16	N/A	N/A
structural_annotation	UHGV-0177429_51	PF17516,NF007197	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0177429_52	PF10743,NF033787	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0177429_56	PF06718	N/A	N/A	N/A	N/A
PHROG	UHGV-0177429_58	phrog_7838	114.2	1e-33	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0177429_58	UniRef90_A0A8D9UGW3	172.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0177429_58	742767.HMPREF9456_02052	139.0	1.49e-38	N/A	N/A
structural_annotation	UHGV-0177429_58	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
KOfam	UHGV-0177429_59	K03111	132.3	5.9e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0177429_59	phrog_44	136.0	2.29999e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0177429_59	UniRef90_D4K451	265.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0177429_59	718252.FP2_06770	265.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0177429_59	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0177429_59	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0177429_59	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0177429_59	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0177429_59	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0177429_60	K02086	66.2	5.5e-19	dnaD; DNA replication protein	N/A
PHROG	UHGV-0177429_60	phrog_186	74.5	1.7e-21	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0177429_60	UniRef90_A0A6N7TLH4	256.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0177429_60	877411.JMMA01000002_gene2292	68.9	0.0000000000715	N/A	N/A
Pfam	UHGV-0177429_60	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-0177429_60	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-0177429_60	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
structural_annotation	UHGV-0177429_60	PF19808,PF07261,TIGR01446,COG3935	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0177429_61	PF11417	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0177429_62	PF01775,MF_00273,NF001981,COG2157	N/A	N/A	N/A	N/A
UniRef90	UHGV-0177429_63	UniRef90_A0A845R8R0	104.0	2.95e-26	N/A	N/A
PHROG	UHGV-0177429_65	phrog_757	129.9	1.4e-38	DNA methyltransferase	other
UniRef90	UHGV-0177429_65	UniRef90_UPI001A9B5584	260.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0177429_65	748224.HMPREF9436_03069	286.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0177429_65	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0177429_65	PF04445,MF_00341,TIGR00537,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0177429_67	phrog_3136	139.2	1.40004e-41	N/A	unknown function
UniRef90	UHGV-0177429_67	UniRef90_A0A329TS47	167.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0177429_67	1235793.C809_02645	78.2	0.00000000000000238	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0177429_67	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0177429_67	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
KOfam	UHGV-0177429_68	K01160	55.4	0.000000000000002	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0177429_68	phrog_34	56.7	5.4e-16	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0177429_68	UniRef90_A0A6N7TND6	233.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0177429_68	875454.BAEW01000002_gene491	143.0	1.52041e-42	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0177429_68	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0177429_68	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0177429_68	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0177429_69	K05925	69.5	5.2e-20	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	N/A
PHROG	UHGV-0177429_69	phrog_359	231.3	0	DNA methyltransferase	other
UniRef90	UHGV-0177429_69	UniRef90_A0A329TJ90	298.0	0	DNA methyltransferase	N/A
eggNOG-mapper	UHGV-0177429_69	1235798.C817_04106	209.0	0	Belongs to the MT-A70-like family	N/A
PADLOC	UHGV-0177429_69	MTase_II_00048	219.8	0	Type II methyltransferase	RM
Pfam	UHGV-0177429_69	PF05063	N/A	N/A	MT-A70	MT-A70
COG	UHGV-0177429_69	COG4725	N/A	N/A	N6-adenosine-specific RNA methylase IME4	N/A
structural_annotation	UHGV-0177429_69	PF05063,MF_01872,NF010253,COG4725	N/A	N/A	N/A	N/A
PHROG	UHGV-0177429_70	phrog_36	55.7	9.6e-16	transcriptional regulator	transcription regulation
structural_annotation	UHGV-0177429_70	PF07374,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0177429	Yes	40,027	55	95	1
UHGV-0204551	No	38,499	55	91	1