vOTU vOTU-066125

vOTU: vOTU-066125

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-066125
Number of genomes	5
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00079 → vGENUS-08932 → vSUBGEN-09692 → vOTU-066125
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger
Host range breadth	Genus
Lifestyle	temperate (evidence: geNomad)

Representative genome
Genome ID	UHGV-0092071
Biosample ID	N/A
Genome length (bp)	38,185 bps
CheckV completeness	93.42% (High-quality)
CDS count	62
CDS density	94.17%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger	Total connections	306	Host agreement	95.42
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger formicilis	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 93.42)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0092071_4	1041142.ATTP01000043_gene5324	59.3	0.000000108	N/A	N/A
PHROG	UHGV-0092071_5	phrog_72	43.0	0.0000000000036	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0092071_5	445972.ANACOL_01825	115.0	3.09e-30	N/A	N/A
structural_annotation	UHGV-0092071_5	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0092071_6	phrog_7566	54.7	0.0000000000000015	N/A	unknown function
eggNOG-mapper	UHGV-0092071_6	1507.HMPREF0262_00433	49.3	0.00000283	N/A	N/A
KOfam	UHGV-0092071_7	K03111	138.8	6.09999e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0092071_7	phrog_44	145.2	3.60134e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0092071_7	UniRef90_A0A1Q6T150	179.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0092071_7	411471.SUBVAR_04646	171.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0092071_7	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0092071_7	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0092071_7	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0092071_7	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0092071_7	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0092071_8	phrog_4973	53.5	0.0000000000000038	N/A	unknown function
UniRef90	UHGV-0092071_8	UniRef90_A0A3D3Y5F2	66.6	0.000000000000781	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0092071_8	584708.Apau_1668	47.8	0.00000643	Helix-turn-helix domain	N/A
Pfam	UHGV-0092071_8	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0092071_8	PF14090,TIGR00373,COG4738	N/A	N/A	N/A	N/A
KOfam	UHGV-0092071_9	K02086	45.2	0.0000000000012	dnaD; DNA replication protein	N/A
PHROG	UHGV-0092071_9	phrog_186	93.8	2.2e-27	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0092071_9	UniRef90_A0A318KSV9	119.0	7.43e-29	DnaD/phage-associated family protein	N/A
eggNOG-mapper	UHGV-0092071_9	428127.EUBDOL_01512	110.0	4.03e-26	DnaD domain protein	N/A
Pfam	UHGV-0092071_9	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-0092071_9	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
COG	UHGV-0092071_9	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0092071_9	PF07106,PF07261,MF_01177,TIGR01714,TIGR01446,COG5529	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0092071_10	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-0092071_11	K01160	59.6	9.6e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0092071_11	phrog_34	62.8	6.1e-18	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0092071_11	UniRef90_UPI0018ABA1B6	152.0	5.60519e-45	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0092071_11	875454.BAEW01000002_gene491	108.0	6.97e-29	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0092071_11	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0092071_11	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0092071_11	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0092071_12	phrog_2245	53.0	0.0000000000000062	nucleoside triphosphate pyrophosphohydrolase	other
PHROG	UHGV-0092071_16	phrog_7711	102.7	1.9e-30	N/A	unknown function
eggNOG-mapper	UHGV-0092071_16	886882.PPSC2_p0287	75.1	0.0000000000000135	N/A	N/A
PHROG	UHGV-0092071_17	phrog_111	162.9	0	DNA methyltransferase	other
UniRef90	UHGV-0092071_17	UniRef90_A0A316S635	238.0	0	Adenine methyltransferase	N/A
eggNOG-mapper	UHGV-0092071_17	760568.Desku_0784	195.0	0	DNA N-6-adenine-methyltransferase	N/A
PADLOC	UHGV-0092071_17	oMTase_00015	192.5	0	orphan methyltransferase	RM
Pfam	UHGV-0092071_17	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-0092071_17	PF05869,MF_03187,TIGR01712,COG2263	N/A	N/A	N/A	N/A
PHROG	UHGV-0092071_21	phrog_36	73.9	2.6e-21	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0092071_21	658655.HMPREF0988_02569	51.2	0.00000426	sigma factor activity	N/A
Pfam	UHGV-0092071_21	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-0092071_21	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0092071_21	PF04545,PF18323,MF_00674,NF009172,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-0092071_22	phrog_56	63.0	9.4e-32	DNA methyltransferase	other
UniRef90	UHGV-0092071_22	UniRef90_UPI001C01192B	352.0	0	DNA adenine methylase	N/A
eggNOG-mapper	UHGV-0092071_22	1236504.HMPREF2132_01695	159.0	9.08041e-43	D12 class N6 adenine-specific DNA methyltransferase	N/A
PADLOC	UHGV-0092071_22	MTase_II_00075	65.2	2.6e-28	Type II methyltransferase	RM
Pfam	UHGV-0092071_22	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
structural_annotation	UHGV-0092071_22	PF02086,NF008152,COG0338	N/A	N/A	N/A	N/A
PHROG	UHGV-0092071_23	phrog_606	93.1	3e-27	terminase small subunit	head and packaging
UniRef90	UHGV-0092071_23	UniRef90_UPI00195648BB	181.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0092071_23	397290.C810_05185	157.0	0	DNA-packaging protein gp3	N/A
Pfam	UHGV-0092071_23	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0092071_23	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-0092071_24	K06909	397.6	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0092071_24	phrog_3717	160.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0092071_24	UniRef90_UPI001C3B9235	620.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0092071_24	411471.SUBVAR_06507	577.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0092071_24	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0092071_24	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0092071_24	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0092071_24	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0092071_24	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0092071_25	phrog_64	170.3	0	portal protein	head and packaging
UniRef90	UHGV-0092071_25	UniRef90_UPI0018A8A301	598.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0092071_25	673376.F2VHW1_9CAUD	202.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0092071_25	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0092071_25	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0092071_26	phrog_8680	199.8	0	N/A	unknown function
UniRef90	UHGV-0092071_26	UniRef90_A0A844D688	301.0	0	N/A	N/A
eggNOG-mapper	UHGV-0092071_26	411470.RUMGNA_02208	187.0	0	N/A	N/A
Pfam	UHGV-0092071_26	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-0092071_26	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-0092071_28	phrog_2468	112.5	2.3e-33	head morphogenesis	head and packaging
UniRef90	UHGV-0092071_28	UniRef90_A0A7X5E1T7	414.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0092071_28	1504822.CCNO01000013_gene286	184.0	0	cell adhesion	N/A
Pfam	UHGV-0092071_28	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0092071_28	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0092071_28	PF06152,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0092071_31	phrog_5	71.7	1.5e-20	tail completion or Neck1 protein	connector
UniRef90	UHGV-0092071_31	UniRef90_A0A3A9EIF3	201.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0092071_31	1280685.AUKC01000004_gene1630	110.0	3.55e-29	N/A	N/A
Pfam	UHGV-0092071_31	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0092071_31	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0092071_31	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0092071_32	phrog_194	44.1	0.0000000000038	head scaffolding protein	head and packaging
UniRef90	UHGV-0092071_32	UniRef90_A0A6B9SU02	121.0	7.38e-31	Fibronectin autolysin	N/A
structural_annotation	UHGV-0092071_32	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0092071_33	phrog_544	117.0	1.7e-34	major head protein	head and packaging
UniRef90	UHGV-0092071_33	UniRef90_A0A1C6B5R0	319.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0092071_33	476272.RUMHYD_01776	292.0	0	N/A	N/A
structural_annotation	UHGV-0092071_33	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0092071_35	phrog_17977	82.5	3.4e-24	N/A	unknown function
UniRef90	UHGV-0092071_35	UniRef90_UPI00141211AB	87.0	9.78e-20	head-tail adaptor protein	N/A
structural_annotation	UHGV-0092071_35	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0092071_36	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-0092071_37	phrog_885	72.2	5.5e-21	major tail protein	tail
UniRef90	UHGV-0092071_37	UniRef90_A0A843J9F0	182.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0092071_37	1504822.CCNO01000012_gene492	214.0	0	N/A	N/A
structural_annotation	UHGV-0092071_37	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0092071_38	phrog_18646	53.9	0.0000000000000028	N/A	unknown function
PHROG	UHGV-0092071_40	phrog_6900	256.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0092071_40	UniRef90_A0A3D0EFB4	239.0	0	Phage tail protein (Fragment)	N/A
eggNOG-mapper	UHGV-0092071_40	536233.CLO_1577	288.0	0	tape measure	N/A
COG	UHGV-0092071_40	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0092071_40	PF20155	N/A	N/A	N/A	N/A
PHROG	UHGV-0092071_41	phrog_33	52.7	0.0000000000000097	distal tail protein Dit	tail
UniRef90	UHGV-0092071_41	UniRef90_UPI001C0FCFFA	261.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-0092071_41	1033737.CAEV01000029_gene285	94.7	7.1e-20	Phage tail protein	N/A
COG	UHGV-0092071_41	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0092071_41	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0092071_42	phrog_538	106.8	2e-31	minor tail protein	tail
eggNOG-mapper	UHGV-0092071_42	665956.HMPREF1032_02940	90.1	2.12e-17	N/A	N/A
Pfam	UHGV-0092071_42	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0092071_42	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0092071_43	phrog_9534	126.8	1.9e-37	head protein	head and packaging
eggNOG-mapper	UHGV-0092071_43	864178.E2ELJ8_9CAUD	95.1	8.09e-19	cell adhesion	N/A
structural_annotation	UHGV-0092071_43	PF21567	N/A	N/A	N/A	N/A
NCBIFam	UHGV-0092071_45	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-0092071_45	NF040910	N/A	N/A	N/A	N/A
KOfam	UHGV-0092071_46	K24213	80.0	3e-23	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-0092071_46	phrog_819	86.7	2.5e-25	tail protein	tail
Pfam	UHGV-0092071_46	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
structural_annotation	UHGV-0092071_46	PF10651	N/A	N/A	N/A	N/A
KOfam	UHGV-0092071_49	K07273	135.5	5.4e-40	acm; lysozyme	N/A
PHROG	UHGV-0092071_49	phrog_291	103.6	1.9e-30	endolysin	lysis
UniRef90	UHGV-0092071_49	UniRef90_A0A1Q6T343	452.0	0	Peptidase_M23 domain-containing protein	N/A
eggNOG-mapper	UHGV-0092071_49	877424.ATWC01000009_gene1193	132.0	3.04e-30	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0092071_49	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
Pfam	UHGV-0092071_49	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0092071_49	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0092071_49	PF01551,PF01183,NF040883,COG0739,COG3757	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0092071_50	1042156.CXIVA_01580	58.2	0.00000000294	N/A	N/A
PHROG	UHGV-0092071_51	phrog_13256	54.8	0.0000000000000011	N/A	unknown function
eggNOG-mapper	UHGV-0092071_51	1226322.HMPREF1545_00166	53.9	0.0000000106	N/A	N/A
KOfam	UHGV-0092071_52	K07684	42.5	0.000000000011	narL; two-component system, NarL family, nitrate/nitrite response regulator NarL	N/A
Pfam	UHGV-0092071_52	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
COG	UHGV-0092071_52	COG2197	N/A	N/A	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	N/A
PHROG	UHGV-0092071_53	phrog_3754	91.5	9.8e-27	N/A	unknown function
eggNOG-mapper	UHGV-0092071_53	476272.RUMHYD_01764	145.0	1.49939e-43	N/A	N/A
PHROG	UHGV-0092071_54	phrog_21718	118.6	4e-35	N/A	unknown function
eggNOG-mapper	UHGV-0092071_54	397290.C810_05210	97.1	2.98e-23	N/A	N/A
PHROG	UHGV-0092071_55	phrog_22984	76.9	9e-24	N/A	unknown function
PHROG	UHGV-0092071_56	phrog_16490	182.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0092071_56	1408437.JNJN01000043_gene803	80.1	0.00000000000000415	N/A	N/A
PHROG	UHGV-0092071_57	phrog_20016	194.7	0	N/A	unknown function
UniRef90	UHGV-0092071_57	UniRef90_A0A285PT46	194.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0092071_57	1226322.HMPREF1545_00077	176.0	0	N/A	N/A
structural_annotation	UHGV-0092071_57	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0092071_58	PF12510	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0092071_59	1226322.HMPREF1545_00079	66.2	0.00000000000181	N/A	N/A
UniRef90	UHGV-0092071_61	UniRef90_A0A1T4XQT6	448.0	0	TraX protein	N/A
eggNOG-mapper	UHGV-0092071_61	622312.ROSEINA2194_03263	233.0	0	N/A	N/A
Pfam	UHGV-0092071_61	PF05857	N/A	N/A	TraX protein	TraX
structural_annotation	UHGV-0092071_61	PF05857,MF_01949,NF010454	N/A	N/A	N/A	N/A
KOfam	UHGV-0092071_62	K03701	783.1	0	uvrA; excinuclease ABC subunit A	N/A
PHROG	UHGV-0092071_62	phrog_21263	596.6	0	N/A	unknown function
UniRef90	UHGV-0092071_62	UniRef90_A0A1T4XQS3	1622.0	0	Excinuclease ABC subunit A	N/A
eggNOG-mapper	UHGV-0092071_62	718252.FP2_29080	1295.0	0	N/A	N/A
Pfam	UHGV-0092071_62	PF00005	N/A	N/A	ABC transporter	ABC_tran
Pfam	UHGV-0092071_62	PF17755	N/A	N/A	UvrA DNA-binding domain	UvrA_DNA-bind
Pfam	UHGV-0092071_62	PF13304	N/A	N/A	AAA domain, putative AbiEii toxin, Type IV TA system	AAA_21
Pfam	UHGV-0092071_62	PF12399	N/A	N/A	Branched-chain amino acid ATP-binding cassette transporter	BCA_ABC_TP_C
COG	UHGV-0092071_62	COG0178	N/A	N/A	Excinuclease UvrABC ATPase subunit	N/A
structural_annotation	UHGV-0092071_62	PF17755,PF13304,MF_00205,NF001503,COG0178	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0092071	Yes	38,185	52	93	1
UHGV-1457077	No	34,404	51	84	1
UHGV-1464398	No	22,718	51	56	1
UHGV-1385014	No	22,395	51	55	1
UHGV-1709185	No	19,705	50	48	1