vOTU vOTU-066180

vOTU: vOTU-066180

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-066180
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00146 → vGENUS-00309 → vSUBGEN-42315 → vOTU-066180
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter → Mediterraneibacter faecis
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1502273
Biosample ID	SAMN05826734
Genome length (bp)	35,186 bps
CheckV completeness	98.45% (High-quality)
CDS count	49
CDS density	92.12%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter → Mediterraneibacter faecis	Total connections	338	Host agreement	73.37
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter → Mediterraneibacter faecis	Total connections	99	Host agreement	92.93

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 98.45)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1502273_1	phrog_38135	63.2	1.8e-18	N/A	unknown function
UniRef90	UHGV-1502273_1	UniRef90_UPI001F3985DB	676.0	0	N/A	N/A
eggNOG-mapper	UHGV-1502273_1	658088.HMPREF0987_00537	79.3	0.000000000000137	DNA/RNA non-specific endonuclease	N/A
Pfam	UHGV-1502273_1	PF14020	N/A	N/A	N/A	DUF4236
structural_annotation	UHGV-1502273_1	PF14020,PF21602	N/A	N/A	N/A	N/A
KOfam	UHGV-1502273_2	K18830	68.5	1e-19	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1502273_2	phrog_4	51.6	0.000000000000021	transcriptional repressor	transcription regulation
UniRef90	UHGV-1502273_2	UniRef90_A0A1Q6K9L5	232.0	0	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-1502273_2	1280698.AUJS01000007_gene1002	154.0	0	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1502273_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1502273_2	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1502273_2	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1502273_4	COG1321	N/A	N/A	N/A	N/A
PHROG	UHGV-1502273_8	phrog_3584	153.9	1.4013e-45	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1502273_8	665950.HMPREF1025_02552	317.0	0	N/A	N/A
structural_annotation	UHGV-1502273_8	PF21578,NF041486	N/A	N/A	N/A	N/A
KOfam	UHGV-1502273_9	K03469	50.9	0.000000000000029	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-1502273_9	phrog_531	61.1	2e-17	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1502273_9	UniRef90_A0A844KCI1	294.0	0	Ribonuclease HI	N/A
eggNOG-mapper	UHGV-1502273_9	665950.HMPREF1025_02551	152.0	1.4013e-45	RNase H	N/A
Pfam	UHGV-1502273_9	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-1502273_9	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-1502273_9	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1502273_10	1280698.AUJS01000007_gene1016	229.0	0	N/A	N/A
PHROG	UHGV-1502273_11	phrog_4433	68.4	7.6e-25	N/A	unknown function
eggNOG-mapper	UHGV-1502273_11	1280698.AUJS01000007_gene1017	216.0	0	N/A	N/A
structural_annotation	UHGV-1502273_11	PF12120,NF000318	N/A	N/A	N/A	N/A
PHROG	UHGV-1502273_12	phrog_8470	215.8	0	N/A	unknown function
UniRef90	UHGV-1502273_12	UniRef90_UPI001C01E393	582.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-1502273_12	1280698.AUJS01000007_gene1018	842.0	0	N/A	N/A
Pfam	UHGV-1502273_12	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-1502273_12	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-1502273_13	phrog_15077	93.2	4.8e-27	N/A	unknown function
UniRef90	UHGV-1502273_13	UniRef90_A0A3A6HZA9	232.0	0	N/A	N/A
eggNOG-mapper	UHGV-1502273_13	1280698.AUJS01000007_gene1019	376.0	0	N/A	N/A
structural_annotation	UHGV-1502273_13	PF11300,NF033725	N/A	N/A	N/A	N/A
PHROG	UHGV-1502273_14	phrog_7566	114.9	2.5e-34	N/A	unknown function
eggNOG-mapper	UHGV-1502273_14	665950.HMPREF1025_02547	171.0	0	N/A	N/A
PHROG	UHGV-1502273_17	phrog_8684	91.0	1.9e-27	N/A	unknown function
UniRef90	UHGV-1502273_17	UniRef90_A0A373MXN9	309.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1502273_17	457412.RSAG_01162	169.0	0	YopX protein	N/A
Pfam	UHGV-1502273_17	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-1502273_17	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-1502273_21	phrog_36	66.6	4.4e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-1502273_21	UniRef90_UPI000E49B095	201.0	0	N/A	N/A
eggNOG-mapper	UHGV-1502273_21	658655.HMPREF0988_02569	152.0	0	sigma factor activity	N/A
Pfam	UHGV-1502273_21	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-1502273_21	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1502273_21	PF07374,MF_00674,TIGR02984,COG1595	N/A	N/A	N/A	N/A
KOfam	UHGV-1502273_22	K07451	48.8	0.00000000000014	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-1502273_22	phrog_119	84.9	9.1e-25	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1502273_22	UniRef90_A0A1Q6K9L9	213.0	0	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-1502273_22	1232452.BAIB02000007_gene1631	95.5	1.6e-23	HNH nucleases	N/A
Pfam	UHGV-1502273_22	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1502273_22	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1502273_22	PF09889,COG4068	N/A	N/A	N/A	N/A
PHROG	UHGV-1502273_23	phrog_5110	101.5	4.6e-30	terminase small subunit	head and packaging
UniRef90	UHGV-1502273_23	UniRef90_A0A1C5LZF0	102.0	6.01e-26	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-1502273_23	1211817.CCAT010000008_gene938	81.6	5.02e-18	Phage terminase, small subunit	N/A
COG	UHGV-1502273_23	COG5484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1502273_23	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1502273_24	phrog_9	259.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-1502273_24	UniRef90_D4M588	1110.0	0	Phage terminase-like protein, large subunit	N/A
eggNOG-mapper	UHGV-1502273_24	1232452.BAIB02000007_gene1629	528.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-1502273_24	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1502273_24	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1502273_24	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1502273_24	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1502273_25	phrog_12	68.1	6.3e-20	portal protein	head and packaging
UniRef90	UHGV-1502273_25	UniRef90_UPI00156D5DC9	589.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1502273_25	1232452.BAIB02000007_gene1627	281.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-1502273_25	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1502273_25	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1502273_25	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1502273_26	K01358	113.8	1.9e-33	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1502273_26	phrog_94	177.0	0	head maturation protease	head and packaging
UniRef90	UHGV-1502273_26	UniRef90_D4M590	496.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1502273_26	1235792.C808_00085	207.0	0	Clp protease	N/A
Pfam	UHGV-1502273_26	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1502273_26	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1502273_26	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1502273_27	phrog_10	88.5	6.3e-26	major head protein	head and packaging
UniRef90	UHGV-1502273_27	UniRef90_D4M591	716.0	0	Phage capsid family	N/A
eggNOG-mapper	UHGV-1502273_27	1232452.BAIB02000007_gene1625	475.0	0	Phage capsid family	N/A
Pfam	UHGV-1502273_27	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1502273_27	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1502273_27	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1502273_27	PF05065,TIGR01554,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-1502273_29	UniRef90_D4M593	205.0	0	Phage head-tail adaptor, putative, SPP1 family	N/A
NCBIFam	UHGV-1502273_29	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-1502273_29	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1502273_30	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-1502273_31	phrog_5	47.0	0.00000000000054	tail completion or Neck1 protein	connector
UniRef90	UHGV-1502273_31	UniRef90_D4M595	199.0	0	Phage protein, HK97 gp10 family	N/A
NCBIFam	UHGV-1502273_31	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1502273_31	TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1502273_32	phrog_88	97.4	1.5e-28	major tail protein	tail
UniRef90	UHGV-1502273_32	UniRef90_D4M596	389.0	0	Phage major tail protein, phi13 family	N/A
Pfam	UHGV-1502273_32	PF04630	N/A	N/A	Phage tail tube protein	Phage_TTP_1
NCBIFam	UHGV-1502273_32	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1502273_32	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1502273_34	phrog_1272	217.4	0	tail length tape measure protein	tail
UniRef90	UHGV-1502273_34	UniRef90_A0A373N7M8	1112.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1502273_34	1035184.HMPREF1042_1328	306.0	0	Phage tail tape measure protein	N/A
Pfam	UHGV-1502273_34	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1502273_34	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-1502273_34	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
PHROG	UHGV-1502273_35	phrog_33	61.5	2.1e-17	distal tail protein Dit	tail
UniRef90	UHGV-1502273_35	UniRef90_UPI000E50043B	357.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1502273_35	1235798.C817_04593	209.0	0	phage tail	N/A
COG	UHGV-1502273_35	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1502273_35	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1502273_36	phrog_13289	397.8	0	tail protein	tail
UniRef90	UHGV-1502273_36	UniRef90_D4M5A0	1075.0	0	Phage minor structural protein, N-terminal region	N/A
eggNOG-mapper	UHGV-1502273_36	1235798.C817_02568	476.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-1502273_36	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1502273_36	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1502273_36	COG2885	N/A	N/A	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	N/A
structural_annotation	UHGV-1502273_36	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1502273_37	phrog_14030	135.1	3.09999e-40	N/A	unknown function
UniRef90	UHGV-1502273_37	UniRef90_A0A373N7H3	626.0	0	Peptidase M23	N/A
eggNOG-mapper	UHGV-1502273_37	33035.JPJF01000093_gene2240	325.0	0	NlpC/P60 family	N/A
Pfam	UHGV-1502273_37	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-1502273_37	PF05382	N/A	N/A	Bacteriophage peptidoglycan hydrolase	Amidase_5
COG	UHGV-1502273_37	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-1502273_37	PF18013,PF05382,NF033742,COG0791	N/A	N/A	N/A	N/A
KOfam	UHGV-1502273_38	K07296	42.2	0.000000000008	ADIPOQ, ACDC; adiponectin	N/A
PHROG	UHGV-1502273_38	phrog_10972	45.3	0.00000000000095	tail fiber protein	tail
UniRef90	UHGV-1502273_38	UniRef90_A0A374E9Q0	400.0	0	Collagen-like protein	N/A
eggNOG-mapper	UHGV-1502273_38	1235798.C817_04596	127.0	7.68e-31	the current gene model (or a revised gene model) may contain a frame shift	N/A
Pfam	UHGV-1502273_38	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-1502273_38	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-1502273_38	PF10651,NF007636,COG5456	N/A	N/A	N/A	N/A
PHROG	UHGV-1502273_39	phrog_16164	76.1	2.5e-22	N/A	unknown function
eggNOG-mapper	UHGV-1502273_39	33035.JPJF01000093_gene2236	165.0	0	N/A	N/A
structural_annotation	UHGV-1502273_39	PF10651,NF032891	N/A	N/A	N/A	N/A
KOfam	UHGV-1502273_40	K16628	95.0	1.6e-28	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-1502273_40	phrog_819	132.7	2.4e-40	tail protein	tail
UniRef90	UHGV-1502273_40	UniRef90_UPI0011C154AF	286.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-1502273_40	290402.Cbei_3387	179.0	0	N/A	N/A
Pfam	UHGV-1502273_40	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
KOfam	UHGV-1502273_41	K06236	40.7	0.00000000001	COL1A; collagen type I alpha	N/A
PHROG	UHGV-1502273_41	phrog_5073	63.1	2.8e-18	tail fiber protein	tail
UniRef90	UHGV-1502273_41	UniRef90_UPI001A9A6571	363.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-1502273_41	877414.ATWA01000019_gene2051	80.5	0.0000000000000502	N/A	N/A
Pfam	UHGV-1502273_41	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
structural_annotation	UHGV-1502273_41	PF05737	N/A	N/A	N/A	N/A
UniRef90	UHGV-1502273_42	UniRef90_A0A416RA37	154.0	5.66125e-43	Acyl carrier protein	N/A
eggNOG-mapper	UHGV-1502273_42	1235799.C818_04237	283.0	0	N/A	N/A
structural_annotation	UHGV-1502273_42	PF14301	N/A	N/A	N/A	N/A
PHROG	UHGV-1502273_43	phrog_20274	145.3	2.39622e-43	N/A	unknown function
UniRef90	UHGV-1502273_43	UniRef90_A0A173TUK0	205.0	0	Predicted membrane protein	N/A
eggNOG-mapper	UHGV-1502273_43	411902.CLOBOL_05645	156.0	0	N/A	N/A
Pfam	UHGV-1502273_43	PF06541	N/A	N/A	Putative ABC-transporter type IV	ABC_trans_CmpB
COG	UHGV-1502273_43	COG4905	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1502273_43	PF06541,COG4905	N/A	N/A	N/A	N/A
PHROG	UHGV-1502273_44	phrog_37799	73.1	1.2e-21	N/A	unknown function
UniRef90	UHGV-1502273_44	UniRef90_A0A373N7C7	281.0	0	Protein utxA	N/A
eggNOG-mapper	UHGV-1502273_44	411470.RUMGNA_02086	143.0	1.13001e-41	N/A	N/A
Pfam	UHGV-1502273_44	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1502273_44	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1502273_44	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1502273_44	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1502273_45	PF13384,NF001074,COG3677	N/A	N/A	N/A	N/A
KOfam	UHGV-1502273_46	K07273	177.5	0	acm; lysozyme	N/A
PHROG	UHGV-1502273_46	phrog_291	133.8	1.4e-39	endolysin	lysis
UniRef90	UHGV-1502273_46	UniRef90_D4M5A7	694.0	0	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	N/A
eggNOG-mapper	UHGV-1502273_46	515620.EUBELI_01316	189.0	0	Glycoside Hydrolase Family 25-like lysozyme endolysin	N/A
Pfam	UHGV-1502273_46	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1502273_46	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1502273_46	PF01183,NF003627,COG3757,COG5492	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1502273_48	478749.BRYFOR_07651	187.0	0	N/A	N/A
structural_annotation	UHGV-1502273_48	TIGR03826	N/A	N/A	N/A	N/A
PHROG	UHGV-1502273_49	phrog_2329	62.4	5.7e-18	N/A	unknown function
UniRef90	UHGV-1502273_49	UniRef90_UPI0018A8B4F7	108.0	4.79e-30	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	N/A
structural_annotation	UHGV-1502273_49	PF04014,COG2336	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1502273	Yes	35,186	43	98	1
UHGV-0146857	No	35,186	43	98	1
UHGV-0197837	No	28,870	43	82	1
UHGV-1522877	No	23,325	43	66	1