vOTU vOTU-066188

vOTU: vOTU-066188

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-066188
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00022 → vSUBFAM-01801 → vGENUS-03205 → vSUBGEN-42312 → vOTU-066188
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → HGM13006
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1317026
Biosample ID	N/A
Genome length (bp)	36,172 bps
CheckV completeness	96.45% (High-quality)
CDS count	53
CDS density	93.52%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → HGM13006	Total connections	20	Host agreement	90
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 96.45)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1317026_1	phrog_1066	90.6	1.4e-26	N/A	unknown function
eggNOG-mapper	UHGV-1317026_1	1094508.Tsac_2428	92.0	2.25e-22	N/A	N/A
structural_annotation	UHGV-1317026_1	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1317026_2	phrog_9	349.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-1317026_2	UniRef90_A0A1H4BNS6	877.0	0	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
eggNOG-mapper	UHGV-1317026_2	1160721.RBI_I01585	523.0	0	large subunit	N/A
Pfam	UHGV-1317026_2	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1317026_2	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1317026_2	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1317026_2	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1317026_3	phrog_12	128.7	4e-38	portal protein	head and packaging
UniRef90	UHGV-1317026_3	UniRef90_A0A1H4BNH5	432.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-1317026_3	1235755.ANAM01000006_gene2373	215.0	0	Phage portal protein	N/A
Pfam	UHGV-1317026_3	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1317026_3	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1317026_3	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1317026_4	K06904	135.1	7.2e-40	N/A	N/A
PHROG	UHGV-1317026_4	phrog_80	158.7	0	head maturation protease	head and packaging
UniRef90	UHGV-1317026_4	UniRef90_R6CCZ0	228.0	0	Phage prohead protease HK97 family	N/A
eggNOG-mapper	UHGV-1317026_4	324057.Pjdr2_1542	203.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-1317026_4	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-1317026_4	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-1317026_4	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-1317026_4	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-1317026_5	phrog_10	52.9	0.0000000000000058	major head protein	head and packaging
UniRef90	UHGV-1317026_5	UniRef90_A0A1C5W5F9	255.0	0	Phage major capsid protein, HK97 family	N/A
eggNOG-mapper	UHGV-1317026_5	742740.HMPREF9474_04304	258.0	0	Phage capsid family	N/A
Pfam	UHGV-1317026_5	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1317026_5	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-1317026_5	PF05065,PF09032,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1317026_6	phrog_5223	44.0	0.0000000000031	neck protein	connector
NCBIFam	UHGV-1317026_6	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
PHROG	UHGV-1317026_7	phrog_1951	100.7	8.7e-30	head-tail adaptor	connector
UniRef90	UHGV-1317026_7	UniRef90_UPI000E207DD7	80.9	7.34e-18	phage head closure protein	N/A
eggNOG-mapper	UHGV-1317026_7	1226322.HMPREF1545_00118	74.7	4.71e-16	N/A	N/A
Pfam	UHGV-1317026_7	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-1317026_7	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-1317026_7	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1317026_8	phrog_5	47.6	0.00000000000044	tail completion or Neck1 protein	connector
UniRef90	UHGV-1317026_8	UniRef90_UPI00148B2708	99.8	1.54e-24	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1317026_8	198094.BA_0472	92.0	2.32e-22	N/A	N/A
Pfam	UHGV-1317026_8	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1317026_8	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1317026_9	phrog_78	40.2	0.000000000065	tail terminator	connector
eggNOG-mapper	UHGV-1317026_9	1123263.AUKY01000046_gene473	81.6	1.42e-18	N/A	N/A
structural_annotation	UHGV-1317026_9	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-1317026_10	phrog_88	157.7	0	major tail protein	tail
UniRef90	UHGV-1317026_10	UniRef90_A0A3D5L5I4	243.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1317026_10	610130.Closa_0749	223.0	0	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-1317026_10	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1317026_10	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1317026_11	1280681.AUJZ01000038_gene340	94.7	1.61e-23	N/A	N/A
structural_annotation	UHGV-1317026_11	PF11836	N/A	N/A	N/A	N/A
KOfam	UHGV-1317026_12	K20478	40.0	0.0000000000054	GOLGB1; golgin subfamily B member 1	N/A
PHROG	UHGV-1317026_12	phrog_5755	155.2	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1317026_12	742738.HMPREF9460_04078	243.0	0	domain protein	N/A
COG	UHGV-1317026_12	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1317026_12	PF10145,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1317026_13	phrog_33	75.7	9.8e-22	distal tail protein Dit	tail
UniRef90	UHGV-1317026_13	UniRef90_A0A1C6H6D2	228.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1317026_13	1160721.RBI_I01575	142.0	3.4e-39	Phage tail protein	N/A
Pfam	UHGV-1317026_13	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
COG	UHGV-1317026_13	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1317026_13	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1317026_14	phrog_1067	329.7	0	minor head protein	head and packaging
UniRef90	UHGV-1317026_14	UniRef90_A0A1C6H6B4	505.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1317026_14	1123263.AUKY01000068_gene489	386.0	0	Phage minor structural protein	N/A
Pfam	UHGV-1317026_14	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1317026_14	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1317026_14	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1317026_14	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
Pfam	UHGV-1317026_15	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
PHROG	UHGV-1317026_17	phrog_2310	42.1	0.0000000000095	N/A	unknown function
PHROG	UHGV-1317026_18	phrog_1863	70.5	1.5e-20	N/A	unknown function
eggNOG-mapper	UHGV-1317026_18	748224.HMPREF9436_00408	99.4	1.92e-26	N/A	N/A
PHROG	UHGV-1317026_19	phrog_1129	62.4	6.1e-18	holin	lysis
UniRef90	UHGV-1317026_19	UniRef90_A0A1H3XEH1	111.0	2.49e-30	Phage holin family Hol44, holin superfamily V	N/A
eggNOG-mapper	UHGV-1317026_19	1226322.HMPREF1545_00069	111.0	4.3e-31	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1317026_19	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1317026_19	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-1317026_20	phrog_918	125.0	2e-37	N/A	unknown function
UniRef90	UHGV-1317026_20	UniRef90_UPI0015F4118C	135.0	1.07e-39	N/A	N/A
eggNOG-mapper	UHGV-1317026_20	298338.Q5ULN6_9CAUD	130.0	4.19e-38	N/A	N/A
Pfam	UHGV-1317026_20	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-1317026_20	PF19791	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1317026_21	PF12802	N/A	N/A	N/A	N/A
KOfam	UHGV-1317026_22	K07273	187.2	0	acm; lysozyme	N/A
PHROG	UHGV-1317026_22	phrog_291	146.5	2.39622e-43	endolysin	lysis
UniRef90	UHGV-1317026_22	UniRef90_A0A6S6X8V6	169.0	0	Putative Lysozyme	N/A
eggNOG-mapper	UHGV-1317026_22	1415775.U729_2621	144.0	3.89e-38	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-1317026_22	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-1317026_22	PF19085	N/A	N/A	Choline-binding repeat	Choline_bind_2
COG	UHGV-1317026_22	COG3103	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1317026_22	PF01183,PF19127,TIGR04035,TIGR04303,COG3757	N/A	N/A	N/A	N/A
UniRef90	UHGV-1317026_23	UniRef90_A0A350H2J1	52.0	0.000000247	HTH luxR-type domain-containing protein	N/A
structural_annotation	UHGV-1317026_23	PF13404,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1317026_24	phrog_374	63.7	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1317026_24	UniRef90_A0A1I3T111	182.0	0	AP2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1317026_24	478749.BRYFOR_05054	136.0	3.46e-36	AP2 domain protein	N/A
structural_annotation	UHGV-1317026_24	PF18337,PF00847	N/A	N/A	N/A	N/A
KOfam	UHGV-1317026_25	K07726	50.4	0.000000000000047	K07726; putative transcriptional regulator	N/A
PHROG	UHGV-1317026_25	phrog_2104	49.7	0.000000000000063	N/A	unknown function
UniRef90	UHGV-1317026_25	UniRef90_A0A355NLF8	57.4	0.00000000174	DNA-binding protein	N/A
eggNOG-mapper	UHGV-1317026_25	1121296.JONJ01000006_gene2191	59.7	0.000000000204	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1317026_25	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1317026_25	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
PHROG	UHGV-1317026_29	phrog_22984	43.1	0.000000000008	N/A	unknown function
PHROG	UHGV-1317026_30	phrog_16490	53.4	0.000000000000006	N/A	unknown function
eggNOG-mapper	UHGV-1317026_30	397290.C810_05212	61.6	0.0000000129	N/A	N/A
structural_annotation	UHGV-1317026_31	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1317026_32	1408437.JNJN01000043_gene801	79.0	5.59e-16	N/A	N/A
KOfam	UHGV-1317026_33	K14059	112.0	9.3e-33	int; integrase	N/A
PHROG	UHGV-1317026_33	phrog_1	130.9	1.3e-38	integrase	integration and excision
UniRef90	UHGV-1317026_33	UniRef90_UPI00195CC1EE	456.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1317026_33	698758.AXY_01580	100.0	5.3e-21	Phage integrase family	N/A
Pfam	UHGV-1317026_33	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-1317026_33	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1317026_33	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1317026_33	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1317026_34	PF13560,TIGR03070,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1317026_36	phrog_4980	109.1	0	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1317026_36	UniRef90_UPI0008315240	117.0	3.84e-26	S-layer homology domain-containing protein	N/A
eggNOG-mapper	UHGV-1317026_36	411467.BACCAP_04702	127.0	1.37e-29	S-layer homology domain	N/A
Pfam	UHGV-1317026_36	PF00395	N/A	N/A	S-layer homology domain	SLH
Pfam	UHGV-1317026_36	PF07553	N/A	N/A	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
COG	UHGV-1317026_36	COG5263	N/A	N/A	Glucan-binding domain (YG repeat)	N/A
KOfam	UHGV-1317026_37	K22300	49.5	0.0000000000001	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-1317026_37	UniRef90_UPI001899F946	95.9	2.47e-23	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1317026_37	903814.ELI_1263	89.7	1.16e-21	Helix-turn-helix domain	N/A
Pfam	UHGV-1317026_37	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1317026_37	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
UniRef90	UHGV-1317026_40	UniRef90_UPI000F0633F9	64.3	0.00000000000394	DNA-binding protein	N/A
eggNOG-mapper	UHGV-1317026_40	693746.OBV_43260	65.1	0.000000000000336	N/A	N/A
structural_annotation	UHGV-1317026_40	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-1317026_43	phrog_997	109.9	1.8e-32	replication terminator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1317026_43	UniRef90_R6MCS9	92.8	6.2e-22	N/A	N/A
eggNOG-mapper	UHGV-1317026_43	1203606.HMPREF1526_01889	124.0	2.94e-35	replication terminator protein, phage associated	N/A
PHROG	UHGV-1317026_44	phrog_1029	165.7	0	N/A	unknown function
eggNOG-mapper	UHGV-1317026_44	552398.HMPREF0866_01625	133.0	1.49e-35	N/A	N/A
structural_annotation	UHGV-1317026_44	PF10065,COG5532	N/A	N/A	N/A	N/A
KOfam	UHGV-1317026_45	K19171	78.0	8.2e-23	dndD; DNA sulfur modification protein DndD	N/A
PHROG	UHGV-1317026_45	phrog_77	215.3	0	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1317026_45	UniRef90_A0A3A9HXV3	452.0	0	AAA_23 domain-containing protein	N/A
eggNOG-mapper	UHGV-1317026_45	1203606.HMPREF1526_00309	368.0	0	nuclear chromosome segregation	N/A
Pfam	UHGV-1317026_45	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-1317026_45	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1317026_45	PF02463,MF_00449,NF041034,COG0419	N/A	N/A	N/A	N/A
PHROG	UHGV-1317026_46	phrog_862	63.4	4.8e-18	N/A	unknown function
eggNOG-mapper	UHGV-1317026_46	1203606.HMPREF1526_00310	184.0	0	N/A	N/A
structural_annotation	UHGV-1317026_46	PF05037,COG2965	N/A	N/A	N/A	N/A
KOfam	UHGV-1317026_47	K06167	61.9	9.4e-18	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-1317026_47	phrog_392	187.4	0	metal-dependent hydrolase	other
UniRef90	UHGV-1317026_47	UniRef90_UPI00195A5026	286.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-1317026_47	1203606.HMPREF1526_00311	213.0	0	Metallo-beta-lactamase superfamily	N/A
Pfam	UHGV-1317026_47	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
dbAPIS	UHGV-1317026_47	APIS058	N/A	N/A	N/A	N/A
COG	UHGV-1317026_47	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-1317026_47	PF02112,MF_01818,NF041851,COG1234	N/A	N/A	N/A	N/A
PHROG	UHGV-1317026_48	phrog_9474	101.7	8.2e-30	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1317026_48	UniRef90_A0A1I7FTR4	112.0	2.16e-25	DnaD and phage-associated domain-containing protein	N/A
eggNOG-mapper	UHGV-1317026_48	537007.BLAHAN_04210	87.8	2.56e-17	HNH endonuclease	N/A
Pfam	UHGV-1317026_48	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-1317026_48	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
COG	UHGV-1317026_48	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1317026_48	PF09681,TIGR01714	N/A	N/A	N/A	N/A
KOfam	UHGV-1317026_49	K00558	219.6	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1317026_49	phrog_116	263.4	0	DNA methyltransferase	other
UniRef90	UHGV-1317026_49	UniRef90_A0A350THX9	771.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1317026_49	1121334.KB911073_gene1852	659.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-1317026_49	MTase_II_00020	99.9	8.3e-33	Type II methyltransferase	RM
Pfam	UHGV-1317026_49	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1317026_49	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1317026_49	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1317026_52	411459.RUMOBE_01385	62.0	0.0000000000318	N/A	N/A
AcrCatalog	UHGV-1317026_52	cluster_11670	52.8	0.00000000000504	NA	N/A
KOfam	UHGV-1317026_53	K07451	43.7	0.0000000000056	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-1317026_53	phrog_119	50.9	0.000000000000023	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1317026_53	UniRef90_UPI001D11B139	80.5	9.91e-18	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1317026_53	1444310.JANV01000004_gene2686	77.0	1.31e-17	HNH endonuclease	N/A
Pfam	UHGV-1317026_53	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1317026_53	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1317026	Yes	36,172	54	96	1