vOTU vOTU-066539

vOTU: vOTU-066539

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-066539
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00022 → vSUBFAM-07091 → vGENUS-19087 → vSUBGEN-36696 → vOTU-066539
Host lineage
Host range breadth
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-1437458
Biosample ID	SAMN02334029
Genome length (bp)	29,179 bps
CheckV completeness	96.70% (High-quality)
CDS count	43
CDS density	94.41%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method
CRISPR-predicted host lineage	Total connections	Host agreement
PHIST-predicted host lineage	Total connections	Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 96.7)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1437458_1	K07451	54.8	0.0000000000000017	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-1437458_1	phrog_119	81.0	1.4e-23	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1437458_1	UniRef90_A0A1F8V2P3	108.0	3.68e-28	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1437458_1	931626.Awo_c31080	103.0	2.06e-25	HNH nucleases	N/A
Pfam	UHGV-1437458_1	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1437458_1	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1437458_2	phrog_36	58.6	1.2e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-1437458_2	UniRef90_UPI00189CA0E1	77.4	0.00000000000000138	RNA polymerase subunit sigma-24	N/A
eggNOG-mapper	UHGV-1437458_2	1235835.C814_01174	69.7	0.000000000000221	N/A	N/A
structural_annotation	UHGV-1437458_2	PF05263	N/A	N/A	N/A	N/A
KOfam	UHGV-1437458_7	K19779	44.0	0.000000000003	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	N/A
PHROG	UHGV-1437458_7	phrog_599	48.0	0.00000000000023	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1437458_7	UniRef90_UPI0011828CF4	48.1	0.00000715	Lar family restriction alleviation protein	N/A
Pfam	UHGV-1437458_7	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-1437458_7	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-1437458_7	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
UniRef90	UHGV-1437458_9	UniRef90_UPI00189B0B3D	81.3	0.000000000000169	N/A	N/A
eggNOG-mapper	UHGV-1437458_9	140626.JHWB01000009_gene1306	78.2	0.00000000000047	N/A	N/A
Pfam	UHGV-1437458_9	PF14199	N/A	N/A	N/A	DUF4317
structural_annotation	UHGV-1437458_9	PF14199,MF_00730,NF001557,COG3081	N/A	N/A	N/A	N/A
KOfam	UHGV-1437458_10	K03111	139.1	4.30002e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1437458_10	phrog_44	136.5	1.7e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1437458_10	UniRef90_A0A1C5RPL4	209.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1437458_10	411461.DORFOR_00370	203.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-1437458_10	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1437458_10	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1437458_10	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1437458_10	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1437458_10	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
UniRef90	UHGV-1437458_11	UniRef90_A0A417WAJ1	129.0	1.21e-36	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1437458_11	1235800.C819_02254	123.0	1.25e-34	HNH nucleases	N/A
PHROG	UHGV-1437458_12	phrog_15077	113.7	1.6e-35	N/A	unknown function
UniRef90	UHGV-1437458_12	UniRef90_A0A174WLY0	195.0	0	N/A	N/A
eggNOG-mapper	UHGV-1437458_12	411902.CLOBOL_05696	195.0	0	N/A	N/A
PHROG	UHGV-1437458_13	phrog_8470	238.4	0	N/A	unknown function
UniRef90	UHGV-1437458_13	UniRef90_UPI001920BF2D	201.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-1437458_13	1235793.C809_01907	205.0	0	PcfJ-like protein	N/A
Pfam	UHGV-1437458_13	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-1437458_13	PF14284	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1437458_14	411902.CLOBOL_05699	91.3	4.52e-21	N/A	N/A
KOfam	UHGV-1437458_16	K03469	78.5	1.1e-22	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-1437458_16	phrog_531	61.4	1.5e-17	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1437458_16	UniRef90_A0A350VVB3	112.0	7.25e-29	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1437458_16	670487.Ocepr_0851	82.8	3.33e-18	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-1437458_16	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-1437458_16	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-1437458_16	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-1437458_17	phrog_3584	188.5	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1437458_17	UniRef90_A0A1I5LZL1	169.0	0	Relaxase/Mobilisation nuclease domain-containing protein	N/A
eggNOG-mapper	UHGV-1437458_17	1235793.C809_03589	204.0	0	N/A	N/A
structural_annotation	UHGV-1437458_17	PF21578	N/A	N/A	N/A	N/A
Pfam	UHGV-1437458_19	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
structural_annotation	UHGV-1437458_19	PF10743,TIGR01764,COG4220	N/A	N/A	N/A	N/A
KOfam	UHGV-1437458_20	K22299	45.3	0.0000000000017	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-1437458_20	phrog_8	49.6	0.000000000000088	transcriptional regulator	transcription regulation
UniRef90	UHGV-1437458_20	UniRef90_A0A1C7GDV6	81.3	7.69e-19	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-1437458_20	1304866.K413DRAFT_0833	72.4	3.35e-16	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-1437458_20	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1437458_20	PF01381,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1437458_21	K22300	64.9	1.5e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1437458_21	phrog_8	62.3	1.1e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-1437458_21	UniRef90_UPI00156F1ED4	100.0	3.26e-25	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1437458_21	1304866.K413DRAFT_0834	94.4	9.09e-24	PFAM helix-turn-helix domain protein	N/A
Pfam	UHGV-1437458_21	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1437458_21	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1437458_21	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1437458_23	K14059	69.5	4.8e-20	int; integrase	N/A
PHROG	UHGV-1437458_23	phrog_1	93.9	1.8e-27	integrase	integration and excision
UniRef90	UHGV-1437458_23	UniRef90_A0A358PV16	345.0	0	Integrase	N/A
eggNOG-mapper	UHGV-1437458_23	1235793.C809_01362	327.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1437458_23	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
COG	UHGV-1437458_23	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1437458_23	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1437458_24	UniRef90_R9JLH4	262.0	0	Lysozyme	N/A
eggNOG-mapper	UHGV-1437458_24	397291.C804_01109	262.0	0	Phage lysozyme	N/A
Pfam	UHGV-1437458_24	PF13529	N/A	N/A	Peptidase_C39 like family	Peptidase_C39_2
Pfam	UHGV-1437458_24	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1437458_24	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-1437458_24	PF03412,PF01471,COG3271	N/A	N/A	N/A	N/A
PHROG	UHGV-1437458_25	phrog_199	53.4	0.0000000000000026	holin	lysis
UniRef90	UHGV-1437458_25	UniRef90_A0A6N7WQE2	224.0	0	Phage holin family protein	N/A
eggNOG-mapper	UHGV-1437458_25	610130.Closa_1414	185.0	0	toxin secretion phage lysis holin	N/A
Pfam	UHGV-1437458_25	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1437458_25	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1437458_25	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1437458_25	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-1437458_26	K04763	227.5	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-1437458_26	phrog_1	186.3	0	integrase	integration and excision
UniRef90	UHGV-1437458_26	UniRef90_A0A415YBZ1	292.0	0	Integrase	N/A
eggNOG-mapper	UHGV-1437458_26	1291050.JAGE01000001_gene2947	222.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1437458_26	PF13102	N/A	N/A	Phage integrase SAM-like domain	Phage_int_SAM_5
Pfam	UHGV-1437458_26	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1437458_26	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1437458_26	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1437458_27	349123.Lreu23DRAFT_3172	59.3	0.00000429	N/A	N/A
PHROG	UHGV-1437458_28	phrog_18190	335.3	0	N/A	unknown function
UniRef90	UHGV-1437458_28	UniRef90_A0A173UFM3	191.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-1437458_28	397290.C810_01435	200.0	0	N/A	N/A
structural_annotation	UHGV-1437458_28	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
Pfam	UHGV-1437458_29	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1437458_29	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1437458_30	phrog_1535	57.0	1.9e-18	tail length tape measure protein	tail
UniRef90	UHGV-1437458_30	UniRef90_A0A7M1PYL7	165.0	8.78054e-42	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-1437458_30	398512.JQKC01000009_gene461	147.0	1.04e-35	tail tape measure protein, TP901	N/A
COG	UHGV-1437458_30	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-1437458_32	1414720.CBYM010000040_gene1653	77.8	3.73e-17	N/A	N/A
eggNOG-mapper	UHGV-1437458_33	1414720.CBYM010000040_gene1652	72.8	0.0000000000000919	N/A	N/A
PHROG	UHGV-1437458_34	phrog_957	56.3	4.1e-16	head protein	head and packaging
UniRef90	UHGV-1437458_34	UniRef90_UPI0004B43D30	97.4	1.35e-23	N/A	N/A
eggNOG-mapper	UHGV-1437458_34	1414720.CBYM010000040_gene1651	97.4	2.27e-24	N/A	N/A
structural_annotation	UHGV-1437458_34	PF11367,COG4722	N/A	N/A	N/A	N/A
UniRef90	UHGV-1437458_35	UniRef90_A0A133N6J9	122.0	1.25e-32	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-1437458_35	457396.CSBG_01052	144.0	4.69996e-42	N/A	N/A
structural_annotation	UHGV-1437458_35	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1437458_36	phrog_1951	78.2	6.2e-23	head-tail adaptor	connector
UniRef90	UHGV-1437458_36	UniRef90_UPI00189BA764	108.0	9.33e-29	phage head closure protein	N/A
eggNOG-mapper	UHGV-1437458_36	457396.CSBG_01051	69.3	0.0000000000000609	head-tail adaptor	N/A
NCBIFam	UHGV-1437458_36	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-1437458_36	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-1437458_36	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1437458_37	phrog_5223	53.3	0.0000000000000033	neck protein	connector
eggNOG-mapper	UHGV-1437458_37	1211814.CAPG01000074_gene3452	48.5	0.00000605	N/A	N/A
NCBIFam	UHGV-1437458_37	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
eggNOG-mapper	UHGV-1437458_38	1268240.ATFI01000008_gene2588	48.9	0.00000167	N/A	N/A
PHROG	UHGV-1437458_39	phrog_10	118.0	9.2e-35	major head protein	head and packaging
UniRef90	UHGV-1437458_39	UniRef90_A0A843HUX6	313.0	0	Phage major capsid protein	N/A
Pfam	UHGV-1437458_39	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1437458_39	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1437458_39	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1437458_39	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1437458_40	K06904	104.5	1.2e-30	N/A	N/A
PHROG	UHGV-1437458_40	phrog_80	130.5	1.6e-38	head maturation protease	head and packaging
UniRef90	UHGV-1437458_40	UniRef90_UPI001ADAEC41	164.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-1437458_40	324057.Pjdr2_1542	155.0	1.4013e-44	Caudovirus prohead serine protease	N/A
Pfam	UHGV-1437458_40	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
COG	UHGV-1437458_40	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-1437458_40	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-1437458_41	phrog_12	164.9	0	portal protein	head and packaging
UniRef90	UHGV-1437458_41	UniRef90_A0A1V5INC9	394.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1437458_41	324057.Pjdr2_1541	271.0	0	Phage portal protein	N/A
Pfam	UHGV-1437458_41	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1437458_41	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1437458_41	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1437458_42	phrog_9	320.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-1437458_42	UniRef90_A0A1H4BNS6	766.0	0	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
eggNOG-mapper	UHGV-1437458_42	1160721.RBI_I01585	519.0	0	large subunit	N/A
Pfam	UHGV-1437458_42	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1437458_42	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1437458_42	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1437458_42	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1437458_43	phrog_1066	92.3	3.3e-27	N/A	unknown function
eggNOG-mapper	UHGV-1437458_43	1094508.Tsac_2428	80.9	4.85e-18	N/A	N/A
structural_annotation	UHGV-1437458_43	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1437458	Yes	29,179	44	97	1