vOTU vOTU-066838

vOTU: vOTU-066838

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-066838
Number of genomes	4
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00229 → vSUBFAM-00674 → vGENUS-00821 → vSUBGEN-00709 → vOTU-066838
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger
Host range breadth	Genus
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1335875
Biosample ID	SAMN00715170
Genome length (bp)	48,271 bps
CheckV completeness	99.90% (High-quality)
CDS count	83
CDS density	88.19%
tRNA count	2
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger	Total connections	34	Host agreement	70.59
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1335875_1	phrog_64	47.1	0.00000000000022	portal protein	head and packaging
UniRef90	UHGV-1335875_1	UniRef90_A0A7C6W858	104.0	7.9e-27	Phage portal protein (Fragment)	N/A
eggNOG-mapper	UHGV-1335875_1	1121866.AUGK01000003_gene1429	103.0	1.29e-24	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1335875_1	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
PHROG	UHGV-1335875_3	phrog_38	185.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-1335875_3	UniRef90_UPI00164E3A67	437.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1335875_3	1298920.KI911353_gene2682	291.0	0	TIGRFAM Phage	N/A
COG	UHGV-1335875_3	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1335875_3	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-1335875_4	phrog_4707	91.8	7.7e-27	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1335875_4	UniRef90_A0A3C0J9L5	106.0	4.13e-23	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1335875_4	1378168.N510_03331	110.0	3.75e-25	N/A	N/A
Pfam	UHGV-1335875_4	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-1335875_4	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1335875_4	PF01978,TIGR04176,COG3355	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1335875_5	PF19607	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1335875_6	PF17613,COG2139	N/A	N/A	N/A	N/A
KOfam	UHGV-1335875_8	K01520	123.3	2.3e-36	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-1335875_8	phrog_135	115.2	4.7e-34	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1335875_8	UniRef90_A0A6A2VG41	166.0	0	Deoxyuridine 5'-triphosphate nucleotidohydrolase	N/A
eggNOG-mapper	UHGV-1335875_8	1282887.AUJG01000016_gene1113	146.0	3.61955e-42	N/A	N/A
Pfam	UHGV-1335875_8	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-1335875_8	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-1335875_8	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-1335875_8	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
PHROG	UHGV-1335875_10	phrog_236	61.4	2.6e-17	nucleotide kinase	other
UniRef90	UHGV-1335875_10	UniRef90_UPI000462B215	70.1	0.000000000000309	N/A	N/A
eggNOG-mapper	UHGV-1335875_10	665950.HMPREF1025_01364	64.7	0.0000000000615	N/A	N/A
Pfam	UHGV-1335875_10	PF11753	N/A	N/A	N/A	DUF3310
KOfam	UHGV-1335875_11	K03465	197.7	0	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	N/A
PHROG	UHGV-1335875_11	phrog_85	157.8	0	thymidylate synthase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1335875_11	UniRef90_A0A2A7ALC5	235.0	0	Flavin-dependent thymidylate synthase	N/A
eggNOG-mapper	UHGV-1335875_11	657322.FPR_23400	213.0	0	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	N/A
Pfam	UHGV-1335875_11	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
NCBIFam	UHGV-1335875_11	TIGR02170.1	N/A	N/A	FAD-dependent thymidylate synthase	N/A
COG	UHGV-1335875_11	COG1351	N/A	N/A	Thymidylate synthase ThyX, FAD-dependent family	N/A
HAMAP	UHGV-1335875_11	MF_01408	N/A	N/A	Flavin-dependent thymidylate synthase [thyX]	N/A
structural_annotation	UHGV-1335875_11	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-1335875_15	phrog_59	124.7	4.2e-37	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1335875_15	UniRef90_UPI0018682679	126.0	3.85e-33	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1335875_15	357276.EL88_11520	117.0	2.2e-30	HNH endonuclease domain protein	N/A
PADLOC	UHGV-1335875_15	HEase_00016	58.7	2.3e-17	homing endonuclease	RM
Pfam	UHGV-1335875_15	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-1335875_15	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-1335875_15	PF07453	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1335875_19	PF21662,MF_00683,NF010673	N/A	N/A	N/A	N/A
PHROG	UHGV-1335875_21	phrog_1909	125.9	2.6e-37	N/A	unknown function
eggNOG-mapper	UHGV-1335875_21	1210045.ALNP01000012_gene1447	55.1	0.00000678	N/A	N/A
structural_annotation	UHGV-1335875_21	TIGR01651,COG4547	N/A	N/A	N/A	N/A
KOfam	UHGV-1335875_22	K09882	119.9	2.3e-35	cobS; cobaltochelatase CobS [EC:6.6.1.2]	N/A
PHROG	UHGV-1335875_22	phrog_249	171.9	0	porphyrin biosynthesis	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1335875_22	UniRef90_UPI001373859D	268.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1335875_22	402612.FP2177	188.0	0	AAA domain (dynein-related subfamily)	N/A
Pfam	UHGV-1335875_22	PF07728	N/A	N/A	AAA domain (dynein-related subfamily)	AAA_5
COG	UHGV-1335875_22	COG0714	N/A	N/A	MoxR-like ATPase	N/A
structural_annotation	UHGV-1335875_22	PF07728,MF_03121,TIGR02640,COG0714	N/A	N/A	N/A	N/A
PHROG	UHGV-1335875_27	phrog_244	70.7	2.5e-20	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1335875_27	UniRef90_A0A841R0Q1	99.4	1.41e-24	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-1335875_27	742738.HMPREF9460_00725	96.7	2.72e-24	N/A	N/A
KOfam	UHGV-1335875_30	K02314	193.9	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-1335875_30	phrog_19	214.1	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1335875_30	UniRef90_A0A413FWW6	225.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-1335875_30	1007096.BAGW01000033_gene1616	137.0	3.47e-33	DnaB-like helicase N terminal domain	N/A
Pfam	UHGV-1335875_30	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-1335875_30	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1335875_30	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1335875_30	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1335875_32	PF21076,MF_00707,NF001220,COG3830	N/A	N/A	N/A	N/A
PHROG	UHGV-1335875_35	phrog_16304	46.2	0.00000000000088	N/A	unknown function
eggNOG-mapper	UHGV-1335875_35	768706.Desor_0679	67.4	0.0000000000151	N/A	N/A
structural_annotation	UHGV-1335875_37	PF00436,MF_00984,NF005242,COG2965	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1335875_39	1449126.JQKL01000032_gene1263	117.0	3.37e-29	N/A	N/A
structural_annotation	UHGV-1335875_39	PF04404,TIGR00607,COG5055	N/A	N/A	N/A	N/A
PHROG	UHGV-1335875_40	phrog_757	186.7	0	DNA methyltransferase	other
UniRef90	UHGV-1335875_40	UniRef90_A0A349YFI2	249.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1335875_40	1095750.HMPREF9970_0173	248.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1335875_40	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1335875_40	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-1335875_41	phrog_298	69.6	7.3e-21	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1335875_41	UniRef90_UPI00058C5410	100.0	1.21e-22	PD-(D/E)XK nuclease family protein	N/A
eggNOG-mapper	UHGV-1335875_41	1218075.BAYA01000003_gene606	84.0	3.23e-17	N/A	N/A
structural_annotation	UHGV-1335875_41	PF12705,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-1335875_43	phrog_11947	48.2	0.00000000000018	N/A	unknown function
eggNOG-mapper	UHGV-1335875_43	272134.KB731324_gene2120	57.4	0.0000000106	N/A	N/A
PHROG	UHGV-1335875_44	phrog_9958	134.5	5.1e-40	N/A	unknown function
UniRef90	UHGV-1335875_44	UniRef90_UPI001D08A241	154.0	4.34403e-44	N/A	N/A
eggNOG-mapper	UHGV-1335875_44	1160721.RBI_I01591	145.0	1.45006e-41	N/A	N/A
structural_annotation	UHGV-1335875_44	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-1335875_48	phrog_7704	53.9	0.0000000000000035	N/A	unknown function
UniRef90	UHGV-1335875_48	UniRef90_UPI001F533D4C	57.4	0.0000000132	N/A	N/A
Pfam	UHGV-1335875_48	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-1335875_48	NF041588	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1335875_51	PF04606,NF007241	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1335875_52	PF00210,MF_01441,NF011597,COG1528	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1335875_53	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1335875_54	phrog_16490	79.8	4.7e-23	N/A	unknown function
eggNOG-mapper	UHGV-1335875_54	476272.RUMHYD_01770	68.2	0.0000000000363	N/A	N/A
PHROG	UHGV-1335875_56	phrog_21718	45.4	0.0000000000012	N/A	unknown function
eggNOG-mapper	UHGV-1335875_56	1235790.C805_00058	72.0	0.000000000000182	N/A	N/A
PHROG	UHGV-1335875_61	phrog_1129	40.1	0.00000000005	holin	lysis
UniRef90	UHGV-1335875_61	UniRef90_UPI0010313BC1	55.1	0.0000000466	phage holin family protein	N/A
eggNOG-mapper	UHGV-1335875_61	1226322.HMPREF1545_00069	53.1	0.0000000498	Phage holin family Hol44, in holin superfamily V	N/A
structural_annotation	UHGV-1335875_61	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-1335875_65	phrog_24267	70.1	3.8e-20	N/A	unknown function
UniRef90	UHGV-1335875_65	UniRef90_A0A4R1ZZP4	65.9	0.0000000000798	Microcystin-dependent protein	N/A
eggNOG-mapper	UHGV-1335875_65	500635.MITSMUL_03163	79.7	0.00000000000000167	Membrane	N/A
COG	UHGV-1335875_65	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-1335875_65	COG4675	N/A	N/A	N/A	N/A
PHROG	UHGV-1335875_66	phrog_134	45.9	0.00000000000072	N/A	unknown function
UniRef90	UHGV-1335875_66	UniRef90_UPI0003A81066	48.1	0.00000267	XkdX family protein	N/A
eggNOG-mapper	UHGV-1335875_66	1297617.JPJD01000063_gene3069	45.8	0.00000266	Phage uncharacterised protein (Phage_XkdX)	N/A
Pfam	UHGV-1335875_66	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
structural_annotation	UHGV-1335875_66	PF09693,TIGR01669	N/A	N/A	N/A	N/A
KOfam	UHGV-1335875_69	K19304	55.1	0.0000000000000015	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-1335875_69	phrog_14988	45.2	0.0000000000013	peptidase	other
UniRef90	UHGV-1335875_69	UniRef90_A0A1Q6SXP4	270.0	0	Peptidase_M23 domain-containing protein	N/A
eggNOG-mapper	UHGV-1335875_69	665956.HMPREF1032_01628	238.0	0	N/A	N/A
Pfam	UHGV-1335875_69	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
structural_annotation	UHGV-1335875_69	PF01551,NF040883	N/A	N/A	N/A	N/A
PHROG	UHGV-1335875_71	phrog_18190	122.3	1.5e-36	N/A	unknown function
UniRef90	UHGV-1335875_71	UniRef90_UPI000F53DFF3	103.0	1.53e-19	tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-1335875_71	411471.SUBVAR_06932	286.0	0	N/A	N/A
structural_annotation	UHGV-1335875_71	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-1335875_72	phrog_1194	44.5	0.0000000000024	N/A	unknown function
eggNOG-mapper	UHGV-1335875_72	445972.ANACOL_01864	83.6	6.38e-19	N/A	N/A
structural_annotation	UHGV-1335875_72	PF20458,TIGR02126,COG4718	N/A	N/A	N/A	N/A
PHROG	UHGV-1335875_73	phrog_1535	85.1	9.9e-39	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1335875_73	1280692.AUJL01000027_gene2150	85.5	0.0000000000000425	phage tail tape measure protein	N/A
COG	UHGV-1335875_73	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1335875_73	PF10145,TIGR01760	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1335875_75	PF16478	N/A	N/A	N/A	N/A
PHROG	UHGV-1335875_76	phrog_158	65.8	9.4e-19	major tail protein	tail
UniRef90	UHGV-1335875_76	UniRef90_UPI001D06C8CA	99.8	3.36e-24	phage tail protein	N/A
eggNOG-mapper	UHGV-1335875_76	1140002.I570_01436	65.9	0.0000000000103	Phage tail tube protein, TTP	N/A
structural_annotation	UHGV-1335875_76	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1335875_77	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1335875_79	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-1335875_80	UniRef90_A0A1V5X694	61.2	0.000000000656	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-1335875_80	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
NCBIFam	UHGV-1335875_80	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-1335875_80	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1335875_81	phrog_247	247.7	0	major head protein	head and packaging
UniRef90	UHGV-1335875_81	UniRef90_UPI001BA5448B	237.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-1335875_81	33035.JPJF01000106_gene3132	275.0	0	N/A	N/A
Pfam	UHGV-1335875_81	PF20036	N/A	N/A	Major capsid protein 13-like	Gp13-like
structural_annotation	UHGV-1335875_81	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1335875_83	phrog_64	133.2	1.4e-39	portal protein	head and packaging
UniRef90	UHGV-1335875_83	UniRef90_UPI001D06C00B	295.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1335875_83	1121866.AUGK01000003_gene1429	243.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1335875_83	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1335875	Yes	48,271	46	100	1
UHGV-1467432	No	33,658	45	73	1
UHGV-1424988	No	32,952	46	71	1
UHGV-1760947	No	15,331	45	33	1