vOTU vOTU-066892

vOTU: vOTU-066892

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-066892
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00614 → vGENUS-09979 → vSUBGEN-12521 → vOTU-066892
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae
Host range breadth	Family
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1296464
Biosample ID	N/A
Genome length (bp)	43,399 bps
CheckV completeness	99.84% (High-quality)
CDS count	76
CDS density	88.80%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae	Total connections	62	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Flavonifractor → Flavonifractor plautii	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.84)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-1296464_2	PF11607,MF_00436,NF011232,COG1923	N/A	N/A	N/A	N/A
PHROG	UHGV-1296464_3	phrog_581	289.3	0	minor head protein	head and packaging
UniRef90	UHGV-1296464_3	UniRef90_A0A1C5N7V1	946.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-1296464_3	1226322.HMPREF1545_00046	654.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1296464_3	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-1296464_3	PF15542	N/A	N/A	Bacterial toxin 50	Ntox50
COG	UHGV-1296464_3	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1296464_3	PF06152,PF15542,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1296464_4	phrog_533	401.0	0	portal protein	head and packaging
UniRef90	UHGV-1296464_4	UniRef90_A0A1C5N775	931.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-1296464_4	1226322.HMPREF1545_00044	752.0	0	N/A	N/A
Pfam	UHGV-1296464_4	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1296464_4	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1296464_5	K06909	384.5	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1296464_5	phrog_5653	160.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-1296464_5	UniRef90_A0A2U1BEH4	828.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1296464_5	33035.JPJF01000106_gene3136	463.0	0	Terminase small subunit	N/A
Pfam	UHGV-1296464_5	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1296464_5	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1296464_5	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1296464_5	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1296464_5	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1296464_6	phrog_309	145.4	1.20512e-43	terminase small subunit	head and packaging
UniRef90	UHGV-1296464_6	UniRef90_A0A8J6MDX5	236.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1296464_6	693746.OBV_18020	155.0	0	transposase activity	N/A
Pfam	UHGV-1296464_6	PF01527	N/A	N/A	Transposase	HTH_Tnp_1
COG	UHGV-1296464_6	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-1296464_6	PF07141	N/A	N/A	N/A	N/A
KOfam	UHGV-1296464_8	K22299	41.0	0.000000000039	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-1296464_8	phrog_8	54.1	0.0000000000000035	transcriptional regulator	transcription regulation
UniRef90	UHGV-1296464_8	UniRef90_U2SK55	150.0	0	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1296464_8	1226322.HMPREF1545_00039	150.0	0	sequence-specific DNA binding	N/A
Pfam	UHGV-1296464_8	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1296464_8	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1296464_8	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1296464_12	1298920.KI911353_gene2737	109.0	1.03e-29	N/A	N/A
eggNOG-mapper	UHGV-1296464_13	411462.DORLON_00765	81.6	4.96e-16	N/A	N/A
PHROG	UHGV-1296464_17	phrog_38832	82.2	7.5e-25	N/A	unknown function
eggNOG-mapper	UHGV-1296464_17	665956.HMPREF1032_03087	92.4	4.2e-22	N/A	N/A
PHROG	UHGV-1296464_19	phrog_25732	79.9	2.2e-23	N/A	unknown function
UniRef90	UHGV-1296464_19	UniRef90_A0A7G9WJW0	63.9	0.000000000228	Lar family restriction alleviation protein	N/A
UniRef90	UHGV-1296464_20	UniRef90_UPI001C3A10B1	65.1	0.0000000000319	Zinc ribbon domain-containing protein	N/A
eggNOG-mapper	UHGV-1296464_20	1226322.HMPREF1545_00023	56.2	0.000000018	N/A	N/A
UniRef90	UHGV-1296464_22	UniRef90_UPI0012AC12CD	89.4	2.56e-21	Lar family restriction alleviation protein	N/A
eggNOG-mapper	UHGV-1296464_22	742738.HMPREF9460_04054	71.6	0.00000000000000544	Restriction alleviation protein Lar	N/A
structural_annotation	UHGV-1296464_22	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-1296464_24	phrog_8841	475.3	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1296464_24	UniRef90_UPI001D033FF1	754.0	0	N/A	N/A
eggNOG-mapper	UHGV-1296464_24	742738.HMPREF9460_02495	480.0	0	N/A	N/A
Pfam	UHGV-1296464_24	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-1296464_24	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-1296464_24	COG5519	N/A	N/A	N/A	N/A
KOfam	UHGV-1296464_25	K02316	64.3	2.1e-18	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-1296464_25	phrog_11992	124.9	7.2e-37	N/A	unknown function
UniRef90	UHGV-1296464_25	UniRef90_A0A810QG37	295.0	0	ZnF_CHCC domain-containing protein	N/A
eggNOG-mapper	UHGV-1296464_25	742738.HMPREF9460_02494	165.0	0	CHC2 zinc finger	N/A
PADLOC	UHGV-1296464_25	drt-UG29	57.6	1.3e-16	DRT	DRT
Pfam	UHGV-1296464_25	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-1296464_25	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-1296464_25	PF01807	N/A	N/A	N/A	N/A
PHROG	UHGV-1296464_26	phrog_3490	158.0	0	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1296464_26	UniRef90_A0A810Q663	331.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1296464_26	373903.Hore_03490	134.0	1.33e-37	ERCC4 domain	N/A
Pfam	UHGV-1296464_26	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-1296464_26	PF02732,NF040956,COG1948	N/A	N/A	N/A	N/A
UniRef90	UHGV-1296464_27	UniRef90_UPI00082E7ADF	181.0	0	N/A	N/A
Pfam	UHGV-1296464_27	PF05037	N/A	N/A	N/A	DUF669
structural_annotation	UHGV-1296464_27	PF05037	N/A	N/A	N/A	N/A
UniRef90	UHGV-1296464_28	UniRef90_A0A2Z4QA33	139.0	4.55e-38	PD-(D/E)XK nuclease	N/A
eggNOG-mapper	UHGV-1296464_28	718252.FP2_01050	145.0	2.37997e-41	N/A	N/A
structural_annotation	UHGV-1296464_28	PF10926,MF_03030,TIGR04328,COG4343	N/A	N/A	N/A	N/A
PHROG	UHGV-1296464_29	phrog_124	120.7	1.2e-35	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1296464_29	UniRef90_UPI0009EE88A2	276.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-1296464_29	445972.ANACOL_00146	220.0	0	AAA domain	N/A
Pfam	UHGV-1296464_29	PF13479	N/A	N/A	AAA domain	AAA_24
COG	UHGV-1296464_29	COG1100	N/A	N/A	GTPase SAR1 family domain	N/A
structural_annotation	UHGV-1296464_29	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1296464_31	PF13560	N/A	N/A	N/A	N/A
UniRef90	UHGV-1296464_36	UniRef90_A0A3D2D5G1	57.8	0.00000000128	DNA-binding protein	N/A
structural_annotation	UHGV-1296464_36	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
UniRef90	UHGV-1296464_40	UniRef90_U2BKK8	124.0	4.92e-36	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1296464_40	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1296464_40	PF13560,NF040507,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-1296464_41	UniRef90_UPI0018976583	170.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1296464_41	742738.HMPREF9460_02485	67.8	0.000000000000652	Helix-turn-helix XRE-family like proteins	N/A
COG	UHGV-1296464_41	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
PHROG	UHGV-1296464_42	phrog_87	62.4	6.7e-18	metallo-protease	other
UniRef90	UHGV-1296464_42	UniRef90_UPI001D02ABB3	256.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1296464_42	428125.CLOLEP_02739	131.0	3.24e-37	N/A	N/A
Pfam	UHGV-1296464_42	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1296464_42	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1296464_42	PF06114,COG2856	N/A	N/A	N/A	N/A
UniRef90	UHGV-1296464_43	UniRef90_A0A1L4C2N4	119.0	8.18e-28	DNA-binding protein	N/A
eggNOG-mapper	UHGV-1296464_43	1408323.JQKK01000005_gene152	90.5	4.23e-18	Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation	N/A
PHROG	UHGV-1296464_44	phrog_7115	157.7	0	N/A	unknown function
UniRef90	UHGV-1296464_44	UniRef90_G9YSE2	268.0	0	bPH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1296464_44	1121344.JHZO01000003_gene733	240.0	0	Bacterial PH domain	N/A
Pfam	UHGV-1296464_44	PF08000	N/A	N/A	Bacterial PH domain	bPH_1
structural_annotation	UHGV-1296464_44	PF08000,COG3402	N/A	N/A	N/A	N/A
KOfam	UHGV-1296464_45	K14059	264.6	0	int; integrase	N/A
PHROG	UHGV-1296464_45	phrog_1	208.0	0	integrase	integration and excision
UniRef90	UHGV-1296464_45	UniRef90_A0A174KS65	416.0	0	Integrase	N/A
eggNOG-mapper	UHGV-1296464_45	697329.Rumal_0660	373.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1296464_45	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1296464_45	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1296464_45	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1296464_45	PF00589,PF13102,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1296464_46	1226322.HMPREF1545_00079	139.0	2.42004e-41	N/A	N/A
PHROG	UHGV-1296464_48	phrog_20016	193.1	0	N/A	unknown function
UniRef90	UHGV-1296464_48	UniRef90_A0A285PT46	186.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1296464_48	1226322.HMPREF1545_00077	166.0	0	N/A	N/A
structural_annotation	UHGV-1296464_48	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1296464_49	phrog_16490	126.5	0	N/A	unknown function
eggNOG-mapper	UHGV-1296464_49	1226322.HMPREF1545_00076	220.0	0	N/A	N/A
PHROG	UHGV-1296464_50	phrog_22984	114.3	4.9e-34	N/A	unknown function
PHROG	UHGV-1296464_51	phrog_21718	122.9	2e-36	N/A	unknown function
eggNOG-mapper	UHGV-1296464_51	397290.C810_05210	87.8	1.18e-19	N/A	N/A
PHROG	UHGV-1296464_52	phrog_3754	88.7	2.9e-26	N/A	unknown function
eggNOG-mapper	UHGV-1296464_52	1226322.HMPREF1545_00073	143.0	1.01034e-42	N/A	N/A
structural_annotation	UHGV-1296464_53	PF16509,MF_00245,NF008895,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-1296464_54	K01447	66.9	4.1e-19	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1296464_54	phrog_15001	176.3	0	endolysin	lysis
UniRef90	UHGV-1296464_54	UniRef90_A0A1C6D3S9	530.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1296464_54	1378168.N510_01539	317.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1296464_54	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-1296464_54	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-1296464_54	PF01510,MF_04111,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-1296464_57	phrog_1129	68.3	8.1e-20	holin	lysis
UniRef90	UHGV-1296464_57	UniRef90_A0A416QZD1	125.0	5.03e-36	Enolase	N/A
eggNOG-mapper	UHGV-1296464_57	1007096.BAGW01000036_gene2663	124.0	4.22e-36	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1296464_57	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1296464_57	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-1296464_58	phrog_937	49.1	0.000000000000063	hemolysin	other
eggNOG-mapper	UHGV-1296464_58	1226322.HMPREF1545_00067	155.0	0	N/A	N/A
eggNOG-mapper	UHGV-1296464_59	1235797.C816_04174	191.0	0	N/A	N/A
structural_annotation	UHGV-1296464_59	PF14600	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1296464_60	657322.FPR_21910	50.8	0.00000302	N/A	N/A
UniRef90	UHGV-1296464_61	UniRef90_A0A096B066	127.0	1.92e-29	Mtd_N domain-containing protein	N/A
PHROG	UHGV-1296464_62	phrog_18725	55.4	8.6e-22	N/A	unknown function
eggNOG-mapper	UHGV-1296464_62	1226322.HMPREF1545_00062	101.0	5.77e-23	N/A	N/A
structural_annotation	UHGV-1296464_62	PF00354	N/A	N/A	N/A	N/A
PHROG	UHGV-1296464_63	phrog_13879	348.9	0	N/A	unknown function
eggNOG-mapper	UHGV-1296464_63	1226322.HMPREF1545_00061	676.0	0	N/A	N/A
structural_annotation	UHGV-1296464_63	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-1296464_64	phrog_1194	68.0	1.3e-19	N/A	unknown function
eggNOG-mapper	UHGV-1296464_64	1226322.HMPREF1545_00060	251.0	0	N/A	N/A
structural_annotation	UHGV-1296464_64	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1296464_65	phrog_1535	96.6	1.1e-32	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1296464_65	693746.OBV_18190	377.0	0	domain protein	N/A
COG	UHGV-1296464_65	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1296464_65	PF05546,TIGR02559	N/A	N/A	N/A	N/A
PHROG	UHGV-1296464_67	phrog_33872	99.3	2.5e-29	N/A	unknown function
eggNOG-mapper	UHGV-1296464_67	693746.OBV_19740	61.2	0.0000000000422	N/A	N/A
PHROG	UHGV-1296464_68	phrog_706	108.9	4.1e-32	N/A	unknown function
UniRef90	UHGV-1296464_68	UniRef90_UPI001D069FB9	283.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-1296464_68	693746.OBV_18170	205.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1296464_68	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1296464_68	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1296464_69	phrog_11299	84.6	1.3e-24	N/A	unknown function
eggNOG-mapper	UHGV-1296464_69	693746.OBV_18160	190.0	0	N/A	N/A
structural_annotation	UHGV-1296464_69	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1296464_70	phrog_3099	87.9	1.3e-25	N/A	unknown function
eggNOG-mapper	UHGV-1296464_70	1232443.BAIA02000078_gene23	288.0	0	N/A	N/A
structural_annotation	UHGV-1296464_70	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1296464_71	phrog_3266	57.5	2.1e-16	tail completion	connector
eggNOG-mapper	UHGV-1296464_71	1232443.BAIA02000078_gene24	233.0	0	N/A	N/A
structural_annotation	UHGV-1296464_71	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1296464_72	phrog_556	59.8	4.6e-17	minor head protein	head and packaging
UniRef90	UHGV-1296464_72	UniRef90_A0A2U1BEM0	239.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-1296464_72	1226322.HMPREF1545_00054	185.0	0	Minor capsid protein	N/A
Pfam	UHGV-1296464_72	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1296464_72	PF11114,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1296464_73	phrog_3366	106.3	2.3e-31	N/A	unknown function
eggNOG-mapper	UHGV-1296464_73	1226322.HMPREF1545_00053	225.0	0	N/A	N/A
structural_annotation	UHGV-1296464_73	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-1296464_74	phrog_541	107.4	8.5e-32	head-tail adaptor	connector
eggNOG-mapper	UHGV-1296464_74	1120998.AUFC01000030_gene2237	67.4	0.00000000000204	N/A	N/A
PHROG	UHGV-1296464_75	phrog_10	174.6	0	major head protein	head and packaging
UniRef90	UHGV-1296464_75	UniRef90_U2SBS0	622.0	0	Phage capsid family protein	N/A
eggNOG-mapper	UHGV-1296464_75	1226322.HMPREF1545_00050	622.0	0	Phage capsid family	N/A
Pfam	UHGV-1296464_75	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1296464_75	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1296464_75	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1296464_75	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1296464_76	phrog_2303	54.8	0.0000000000000018	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-1296464_76	1226322.HMPREF1545_00049	258.0	0	N/A	N/A
AcrCatalog	UHGV-1296464_76	cluster_74817	57.8	0.000000000000635	NA	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1296464	Yes	43,399	49	100	1
UHGV-0456657	No	25,675	50	60	1
UHGV-0422098	No	10,103	49	18	1