vOTU vOTU-067064

vOTU: vOTU-067064

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-067064
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-01135 → vGENUS-01088 → vSUBGEN-10229 → vOTU-067064
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus → Limivicinus sp900547315
Host range breadth	Species
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0204047
Biosample ID	N/A
Genome length (bp)	38,913 bps
CheckV completeness	99.90% (High-quality)
CDS count	58
CDS density	92.69%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus → Limivicinus sp900547315	Total connections	117	Host agreement	87.18
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus → Limivicinus sp900547315	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0204047_2	K00571	139.1	3.20001e-41	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0204047_2	phrog_67	140.9	8.50028e-42	DNA methyltransferase	other
UniRef90	UHGV-0204047_2	UniRef90_UPI00055C7461	359.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-0204047_2	1235794.C811_01507	131.0	2.06e-35	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-0204047_2	MTase_II_00051	122.2	8.4e-36	Type II methyltransferase	RM
Pfam	UHGV-0204047_2	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0204047_2	COG2189	N/A	N/A	Adenine specific DNA methylase Mod	N/A
PHROG	UHGV-0204047_3	phrog_599	46.9	0.00000000000053	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-0204047_3	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0204047_3	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-0204047_3	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
COG	UHGV-0204047_3	COG1601	N/A	N/A	Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain	N/A
eggNOG-mapper	UHGV-0204047_5	411468.CLOSCI_01459	51.2	0.000000561	N/A	N/A
PHROG	UHGV-0204047_6	phrog_5110	58.4	9.3e-17	terminase small subunit	head and packaging
UniRef90	UHGV-0204047_6	UniRef90_UPI001874172A	115.0	4.82e-31	P27 family phage terminase small subunit	N/A
Pfam	UHGV-0204047_6	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-0204047_6	COG5484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0204047_6	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0204047_7	phrog_9	226.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0204047_7	UniRef90_UPI0018737C02	814.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0204047_7	1235792.C808_00083	588.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0204047_7	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0204047_7	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0204047_7	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0204047_8	phrog_12	110.1	1.6e-32	portal protein	head and packaging
UniRef90	UHGV-0204047_8	UniRef90_UPI0018755FA4	441.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0204047_8	349161.Dred_2606	281.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0204047_8	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0204047_8	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0204047_8	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0204047_9	K01358	123.5	2.1e-36	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0204047_9	phrog_94	183.6	0	head maturation protease	head and packaging
UniRef90	UHGV-0204047_9	UniRef90_UPI00111E41DA	156.0	1.10703e-43	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0204047_9	1121866.AUGK01000006_gene879	130.0	3.94e-34	Clp protease	N/A
Pfam	UHGV-0204047_9	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0204047_9	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0204047_9	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0204047_10	phrog_10	141.3	9.4994e-42	major head protein	head and packaging
UniRef90	UHGV-0204047_10	UniRef90_G9YSC0	570.0	0	Cadherin-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0204047_10	1235792.C808_00086	424.0	0	Phage capsid family	N/A
Pfam	UHGV-0204047_10	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0204047_10	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0204047_10	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0204047_10	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0204047_10	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0204047_11	phrog_749	67.5	1.6e-19	N/A	unknown function
UniRef90	UHGV-0204047_11	UniRef90_UPI001C0F1EE0	71.2	0.0000000000000444	head-tail connector protein	N/A
eggNOG-mapper	UHGV-0204047_11	349161.Dred_2603	101.0	8.57e-27	N/A	N/A
PHROG	UHGV-0204047_12	phrog_19734	108.3	4.6e-32	N/A	unknown function
UniRef90	UHGV-0204047_12	UniRef90_A0A6I7GNS7	114.0	5.08e-30	Phage head closure protein	N/A
eggNOG-mapper	UHGV-0204047_12	349161.Dred_2602	71.6	0.0000000000000192	N/A	N/A
structural_annotation	UHGV-0204047_12	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0204047_13	1235798.C817_04588	89.7	6.66e-22	N/A	N/A
structural_annotation	UHGV-0204047_13	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0204047_14	phrog_5	48.4	0.00000000000017	tail completion or Neck1 protein	connector
UniRef90	UHGV-0204047_14	UniRef90_A0A1C6FG30	144.0	3.83998e-41	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0204047_14	908340.HMPREF9406_2573	95.1	1.51e-22	N/A	N/A
structural_annotation	UHGV-0204047_14	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0204047_15	phrog_88	98.8	4.1e-29	major tail protein	tail
UniRef90	UHGV-0204047_15	UniRef90_UPI0018771F27	302.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0204047_15	33035.JPJF01000039_gene278	120.0	2.84e-31	N/A	N/A
NCBIFam	UHGV-0204047_15	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0204047_15	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0204047_16	PF11836	N/A	N/A	N/A	N/A
KOfam	UHGV-0204047_17	K10421	44.0	0.00000000000018	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-0204047_17	phrog_13339	378.0	0	tail length tape measure protein	tail
UniRef90	UHGV-0204047_17	UniRef90_A0A845R2K9	245.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0204047_17	1408437.JNJN01000030_gene1055	276.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0204047_17	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0204047_17	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0204047_17	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-0204047_18	phrog_13564	47.6	0.00000000000018	minor tail protein	tail
structural_annotation	UHGV-0204047_18	PF16774,PF20753,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0204047_19	K13925	58.0	7e-17	pfbA; plasmin and fibronectin-binding protein A	N/A
PHROG	UHGV-0204047_19	phrog_8745	57.0	4.4e-17	tail fiber protein	tail
eggNOG-mapper	UHGV-0204047_19	221103.XP_007847807.1	65.5	0.0000000946	Glycoside hydrolase family 55 protein	N/A
Pfam	UHGV-0204047_19	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
Pfam	UHGV-0204047_19	PF12708	N/A	N/A	Pectate lyase superfamily protein	Pectate_lyase_3
PHROG	UHGV-0204047_22	phrog_1493	53.6	0.0000000000000038	endolysin	lysis
UniRef90	UHGV-0204047_22	UniRef90_A0A1C6GMR6	190.0	0	NlpC/P60 family	N/A
eggNOG-mapper	UHGV-0204047_22	871963.Desdi_1346	129.0	3.19e-32	NLP P60 protein	N/A
Pfam	UHGV-0204047_22	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0204047_22	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0204047_22	PF01471,PF00877,NF033742,NF038080,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0204047_23	phrog_937	63.2	4e-18	hemolysin	other
eggNOG-mapper	UHGV-0204047_23	1519439.JPJG01000023_gene533	89.4	5.79e-22	N/A	N/A
structural_annotation	UHGV-0204047_24	PF09682,TIGR01673	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0204047_26	1408437.JNJN01000043_gene805	57.0	0.00000000956	N/A	N/A
PHROG	UHGV-0204047_28	phrog_16490	210.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0204047_28	1408437.JNJN01000043_gene803	196.0	0	N/A	N/A
eggNOG-mapper	UHGV-0204047_29	1408437.JNJN01000043_gene802	150.0	2.8026e-45	N/A	N/A
eggNOG-mapper	UHGV-0204047_30	1408437.JNJN01000043_gene801	97.4	8.06e-23	N/A	N/A
KOfam	UHGV-0204047_31	K06400	347.0	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0204047_31	phrog_95	331.5	0	integrase	integration and excision
UniRef90	UHGV-0204047_31	UniRef90_UPI00106696FE	374.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0204047_31	665956.HMPREF1032_03589	373.0	0	N/A	N/A
Pfam	UHGV-0204047_31	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0204047_31	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0204047_31	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0204047_31	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0204047_31	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-0204047_34	UniRef90_A0A357JC47	52.0	0.000000119	RHH_5 domain-containing protein	N/A
Pfam	UHGV-0204047_34	PF08681	N/A	N/A	N/A	DUF1778
structural_annotation	UHGV-0204047_34	PF03869,NF010256,COG4877	N/A	N/A	N/A	N/A
UniRef90	UHGV-0204047_35	UniRef90_A0A174XWS3	70.5	0.000000000000144	Bacterial regulatory proteins, luxR family	N/A
eggNOG-mapper	UHGV-0204047_35	485916.Dtox_2202	58.2	0.0000000221	Plasmid pRiA4b ORF-3-like protein	N/A
Pfam	UHGV-0204047_35	PF13936	N/A	N/A	Helix-turn-helix domain	HTH_38
structural_annotation	UHGV-0204047_35	PF00196,NF040595,COG2771	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0204047_37	PF13560,TIGR03070,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0204047_39	K18843	49.4	0.000000000000081	hicB; antitoxin HicB	N/A
PHROG	UHGV-0204047_39	phrog_497	73.0	5.5e-21	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0204047_39	UniRef90_UPI0019616193	207.0	0	type II toxin-antitoxin system HicB family antitoxin	N/A
eggNOG-mapper	UHGV-0204047_39	1235792.C808_03055	204.0	0	Toxin-antitoxin system, antitoxin component, HicB family	N/A
Pfam	UHGV-0204047_39	PF15919	N/A	N/A	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
COG	UHGV-0204047_39	COG1598	N/A	N/A	Antitoxin component HicB of the HicAB toxin-antitoxin system	N/A
structural_annotation	UHGV-0204047_39	PF15919,COG1598	N/A	N/A	N/A	N/A
PHROG	UHGV-0204047_40	phrog_353	72.8	2.8e-21	toxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0204047_40	UniRef90_A0A3E3K2T1	122.0	3.8e-35	Type II toxin-antitoxin system HicA family toxin	N/A
eggNOG-mapper	UHGV-0204047_40	502558.EGYY_24930	109.0	6.94e-31	HicA toxin of bacterial toxin-antitoxin,	N/A
Pfam	UHGV-0204047_40	PF07927	N/A	N/A	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
COG	UHGV-0204047_40	COG1724	N/A	N/A	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	N/A
structural_annotation	UHGV-0204047_40	PF07927,COG1724	N/A	N/A	N/A	N/A
KOfam	UHGV-0204047_42	K02342	160.2	0	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-0204047_42	phrog_192	147.2	2.52234e-44	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0204047_42	UniRef90_R8W0C6	120.0	1.26e-27	Exonuclease domain-containing protein	N/A
eggNOG-mapper	UHGV-0204047_42	1203606.HMPREF1526_00999	120.0	2.11e-28	EXOIII	N/A
PADLOC	UHGV-0204047_42	cd06127	126.8	1.2e-37	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-0204047_42	PF00929	N/A	N/A	Exonuclease	RNase_T
NCBIFam	UHGV-0204047_42	TIGR00573.1	N/A	N/A	exonuclease, DNA polymerase III, epsilon subunit family	N/A
COG	UHGV-0204047_42	COG2176	N/A	N/A	DNA polymerase III, alpha subunit (gram-positive type)	N/A
UniRef90	UHGV-0204047_43	UniRef90_A0A354UTE4	102.0	1.54e-25	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0204047_43	1095750.HMPREF9970_1686	73.2	0.0000000000000093	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0204047_43	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0204047_43	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0204047_43	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0204047_49	phrog_38338	74.9	1.1e-21	N/A	unknown function
eggNOG-mapper	UHGV-0204047_49	693746.OBV_25410	97.1	2.22e-24	N/A	N/A
PHROG	UHGV-0204047_50	phrog_8470	241.5	0	N/A	unknown function
UniRef90	UHGV-0204047_50	UniRef90_UPI00164B8CC7	247.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0204047_50	1378168.N510_01842	243.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0204047_50	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0204047_50	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0204047_51	phrog_15609	256.0	0	N/A	unknown function
UniRef90	UHGV-0204047_51	UniRef90_A0A7G9WGA3	146.0	1.84e-37	N/A	N/A
eggNOG-mapper	UHGV-0204047_51	1378168.N510_01841	133.0	9.8e-33	N/A	N/A
Pfam	UHGV-0204047_51	PF11300	N/A	N/A	N/A	DUF3102
COG	UHGV-0204047_51	COG2433	N/A	N/A	Possible nuclease of RNase H fold, RuvC/YqgF family	N/A
structural_annotation	UHGV-0204047_51	PF11300,PF07321,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-0204047_52	phrog_24518	85.0	7.7e-25	N/A	unknown function
eggNOG-mapper	UHGV-0204047_52	1519439.JPJG01000077_gene922	104.0	7.56e-25	N/A	N/A
PHROG	UHGV-0204047_54	phrog_3584	117.5	1.1e-34	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0204047_54	537013.CLOSTMETH_02141	73.6	0.000000000000301	N/A	N/A
structural_annotation	UHGV-0204047_54	PF21578,MF_00360	N/A	N/A	N/A	N/A
PHROG	UHGV-0204047_56	phrog_36	47.2	0.00000000000041	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0204047_56	1027396.LMOSA_21360	60.1	0.00000000173	N/A	N/A
Pfam	UHGV-0204047_56	PF07638	N/A	N/A	ECF sigma factor	Sigma70_ECF
NCBIFam	UHGV-0204047_56	TIGR01636.1	N/A	N/A	phage transcriptional regulator, RinA family	N/A
structural_annotation	UHGV-0204047_56	PF05263,TIGR01636,COG1595	N/A	N/A	N/A	N/A
PHROG	UHGV-0204047_58	phrog_119	68.1	1.1e-19	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0204047_58	UniRef90_UPI001958184D	157.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0204047_58	926561.KB900623_gene763	75.1	6.3e-16	HNH nucleases	N/A
COG	UHGV-0204047_58	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0204047	Yes	38,913	59	100	1
UHGV-0189063	No	38,939	59	100	1