vOTU vOTU-067406

vOTU: vOTU-067406

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-067406
Number of genomes	9
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00316 → vGENUS-00408 → vSUBGEN-04558 → vOTU-067406
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis
Host range breadth	Species
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-0059656
Biosample ID	N/A
Genome length (bp)	35,413 bps
CheckV completeness	99.98% (High-quality)
CDS count	59
CDS density	92.41%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis	Total connections	203	Host agreement	93.1
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis	Total connections	294	Host agreement	96.94

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.98)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0059656_1	phrog_1129	64.1	1.7e-18	holin	lysis
UniRef90	UHGV-0059656_1	UniRef90_A0A367FT42	167.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0059656_1	693746.OBV_13280	111.0	7.17e-31	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0059656_1	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0059656_1	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0059656_2	phrog_4105	103.0	1.6e-30	N/A	unknown function
eggNOG-mapper	UHGV-0059656_2	657322.FPR_27220	152.0	0	N/A	N/A
KOfam	UHGV-0059656_3	K07273	182.2	0	acm; lysozyme	N/A
PHROG	UHGV-0059656_3	phrog_291	159.4	0	endolysin	lysis
UniRef90	UHGV-0059656_3	UniRef90_A0A367G061	524.0	0	Peptidase_M23 domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0059656_3	411471.SUBVAR_06927	318.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0059656_3	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
Pfam	UHGV-0059656_3	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0059656_3	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0059656_3	PF01551,PF01183,NF040883,COG0739,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0059656_4	phrog_24267	60.1	5.2e-17	N/A	unknown function
eggNOG-mapper	UHGV-0059656_4	508419.F8J176_9CAUD	114.0	3.19e-25	peptidoglycan catabolic process	N/A
Pfam	UHGV-0059656_4	PF11133	N/A	N/A	Head fiber protein	Phage_head_fibr
Pfam	UHGV-0059656_4	PF03406	N/A	N/A	Phage tail fibre repeat	Phage_fiber_2
PHROG	UHGV-0059656_5	phrog_19111	47.5	3e-25	N/A	unknown function
eggNOG-mapper	UHGV-0059656_5	756499.Desde_3162	109.0	3.55e-24	nuclear chromosome segregation	N/A
COG	UHGV-0059656_5	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
PHROG	UHGV-0059656_7	phrog_13589	182.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0059656_7	742733.HMPREF9469_05009	232.0	0	N/A	N/A
eggNOG-mapper	UHGV-0059656_8	428125.CLOLEP_01433	53.1	0.0000000731	N/A	N/A
structural_annotation	UHGV-0059656_9	PF12245	N/A	N/A	N/A	N/A
PHROG	UHGV-0059656_11	phrog_18444	82.9	2.3e-24	N/A	unknown function
UniRef90	UHGV-0059656_11	UniRef90_UPI00156E9A45	57.8	0.00000000102	peptide chain release factor 2	N/A
eggNOG-mapper	UHGV-0059656_11	1294142.CINTURNW_1707	62.0	0.00000000000362	N/A	N/A
PHROG	UHGV-0059656_12	phrog_18190	83.3	6.9e-32	N/A	unknown function
eggNOG-mapper	UHGV-0059656_12	411471.SUBVAR_06932	313.0	0	N/A	N/A
structural_annotation	UHGV-0059656_12	PF05954,PF00629,PF03424,NF033848,NF033675,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0059656_13	phrog_1194	41.6	0.000000000017	N/A	unknown function
eggNOG-mapper	UHGV-0059656_13	411471.SUBVAR_06933	104.0	2.9e-27	N/A	N/A
structural_annotation	UHGV-0059656_13	PF20458,TIGR02126,COG4718	N/A	N/A	N/A	N/A
PHROG	UHGV-0059656_14	phrog_6900	259.3	0	tail length tape measure protein	tail
UniRef90	UHGV-0059656_14	UniRef90_UPI000C12678D	301.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0059656_14	585203.SMSK564_1276	324.0	0	phage tail tape measure protein	N/A
COG	UHGV-0059656_14	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0059656_14	MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-0059656_15	phrog_1633	139.3	1.19993e-41	N/A	unknown function
UniRef90	UHGV-0059656_15	UniRef90_UPI001939D555	112.0	1.64e-29	N/A	N/A
eggNOG-mapper	UHGV-0059656_15	883110.HMPREF9260_00651	107.0	2.37e-28	N/A	N/A
Pfam	UHGV-0059656_15	PF17318	N/A	N/A	N/A	DUF5361
structural_annotation	UHGV-0059656_15	PF17318	N/A	N/A	N/A	N/A
PHROG	UHGV-0059656_16	phrog_1526	67.6	1.8e-19	N/A	unknown function
eggNOG-mapper	UHGV-0059656_16	1423775.BAMN01000011_gene597	59.7	0.000000000132	N/A	N/A
PHROG	UHGV-0059656_17	phrog_117	181.7	0	major tail protein	tail
UniRef90	UHGV-0059656_17	UniRef90_A0A1Y4TGT6	271.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0059656_17	1121864.OMO_02158	243.0	0	domain, Protein	N/A
COG	UHGV-0059656_17	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0059656_17	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0059656_18	phrog_123	70.8	2.2e-20	tail terminator	connector
UniRef90	UHGV-0059656_18	UniRef90_A0A139NAV0	117.0	6.14e-32	Phage-associated protein	N/A
eggNOG-mapper	UHGV-0059656_18	1280698.AUJS01000007_gene1043	122.0	1.54e-34	N/A	N/A
structural_annotation	UHGV-0059656_18	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-0059656_19	phrog_387	68.6	8.1e-20	neck protein	connector
UniRef90	UHGV-0059656_19	UniRef90_A0A380KNT4	75.1	3.76e-16	N/A	N/A
eggNOG-mapper	UHGV-0059656_19	1121864.OMO_02156	77.8	5.29e-18	N/A	N/A
PHROG	UHGV-0059656_20	phrog_501	69.0	7.5e-20	head closure Hc1	connector
eggNOG-mapper	UHGV-0059656_20	748224.HMPREF9436_00693	166.0	0	N/A	N/A
structural_annotation	UHGV-0059656_20	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0059656_21	phrog_137	54.0	0.000000000000002	head-tail adaptor Ad1	connector
UniRef90	UHGV-0059656_21	UniRef90_E2ZGA8	164.0	0	Phage protein Gp19/Gp15/Gp42	N/A
structural_annotation	UHGV-0059656_21	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-0059656_23	phrog_10	139.6	3.00004e-41	major head protein	head and packaging
UniRef90	UHGV-0059656_23	UniRef90_A0A1Y4TJU9	516.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0059656_23	748224.HMPREF9436_00690	449.0	0	Phage capsid family	N/A
Pfam	UHGV-0059656_23	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0059656_23	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0059656_23	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0059656_23	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0059656_24	phrog_194	83.8	2.7e-24	head scaffolding protein	head and packaging
UniRef90	UHGV-0059656_24	UniRef90_D4K444	158.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0059656_24	748224.HMPREF9436_03336	160.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-0059656_24	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0059656_24	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0059656_26	phrog_193	125.2	6.8e-37	head maturation protease	head and packaging
UniRef90	UHGV-0059656_26	UniRef90_A0A6N8H118	355.0	0	CdiA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0059656_26	748224.HMPREF9436_01469	462.0	0	N/A	N/A
COG	UHGV-0059656_26	COG5529	N/A	N/A	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	N/A
structural_annotation	UHGV-0059656_26	PF11429	N/A	N/A	N/A	N/A
PHROG	UHGV-0059656_27	phrog_104	214.1	0	portal protein	head and packaging
UniRef90	UHGV-0059656_27	UniRef90_A0A3E2U200	739.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0059656_27	748224.HMPREF9436_01468	754.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0059656_27	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0059656_27	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0059656_28	phrog_9	138.4	5.90003e-41	terminase large subunit	head and packaging
UniRef90	UHGV-0059656_28	UniRef90_UPI001D0087E2	458.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0059656_28	1410630.JNKP01000001_gene1822	632.0	0	phage terminase, large subunit	N/A
COG	UHGV-0059656_28	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0059656_28	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0059656_29	phrog_1066	53.2	0.0000000000000052	N/A	unknown function
eggNOG-mapper	UHGV-0059656_29	445975.COLSTE_02166	75.5	6.45e-16	N/A	N/A
AcrCatalog	UHGV-0059656_29	cluster_154855	72.0	5.61e-19	NA	N/A
PHROG	UHGV-0059656_30	phrog_338	60.3	4.2e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0059656_30	UniRef90_UPI0015F33F36	176.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0059656_30	748224.HMPREF9436_01465	177.0	0	N/A	N/A
eggNOG-mapper	UHGV-0059656_32	693746.OBV_18010	79.0	2.31e-16	N/A	N/A
structural_annotation	UHGV-0059656_32	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0059656_37	phrog_3584	207.2	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0059656_37	UniRef90_UPI001C02C5E0	162.0	8.40779e-45	N/A	N/A
eggNOG-mapper	UHGV-0059656_37	718252.FP2_16510	147.0	5.56999e-40	N/A	N/A
structural_annotation	UHGV-0059656_37	PF01446	N/A	N/A	N/A	N/A
PHROG	UHGV-0059656_53	phrog_4583	41.4	0.000000000022	transcriptional repressor	transcription regulation
UniRef90	UHGV-0059656_53	UniRef90_UPI000A0213FB	81.3	1e-18	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0059656_53	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0059656_53	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0059656_53	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0059656_54	UniRef90_A0A6N8H2D7	87.4	2.43e-21	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0059656_54	1121423.JONT01000002_gene2373	51.2	0.000000195	N/A	N/A
structural_annotation	UHGV-0059656_54	PF05339,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0059656_55	K01356	164.6	0	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0059656_55	phrog_4	128.4	6.9e-38	transcriptional repressor	transcription regulation
UniRef90	UHGV-0059656_55	UniRef90_A0A6N8H052	254.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0059656_55	718252.FP2_25580	246.0	0	N/A	N/A
Pfam	UHGV-0059656_55	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0059656_55	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
NCBIFam	UHGV-0059656_55	TIGR00498.1	N/A	N/A	transcriptional repressor LexA	N/A
COG	UHGV-0059656_55	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0059656_55	PF00717,PF01381,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
KOfam	UHGV-0059656_56	K02342	199.2	0	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-0059656_56	phrog_192	157.4	0	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0059656_56	UniRef90_A0A0U5NNK7	169.0	7.20267e-43	DNA polymerase III PolC-type	N/A
eggNOG-mapper	UHGV-0059656_56	1042156.CXIVA_07100	169.0	3.51726e-43	EXOIII	N/A
PADLOC	UHGV-0059656_56	cd06127	129.3	3.4e-38	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-0059656_56	PF00929	N/A	N/A	Exonuclease	RNase_T
NCBIFam	UHGV-0059656_56	TIGR00573.1	N/A	N/A	exonuclease, DNA polymerase III, epsilon subunit family	N/A
COG	UHGV-0059656_56	COG2176	N/A	N/A	DNA polymerase III, alpha subunit (gram-positive type)	N/A
UniRef90	UHGV-0059656_57	UniRef90_A0A3A6E8N9	536.0	0	Cell filamentation protein Fic	N/A
eggNOG-mapper	UHGV-0059656_57	1035196.HMPREF9998_00638	498.0	0	Virulence protein RhuM family	N/A
Pfam	UHGV-0059656_57	PF13310	N/A	N/A	Virulence protein RhuM family	Virulence_RhuM
COG	UHGV-0059656_57	COG3943	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0059656_57	PF13310,TIGR02681,COG3943	N/A	N/A	N/A	N/A
KOfam	UHGV-0059656_58	K06400	191.5	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0059656_58	phrog_95	195.4	0	integrase	integration and excision
UniRef90	UHGV-0059656_58	UniRef90_A0A373LB38	160.0	1.4013e-45	Recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0059656_58	718252.FP2_01160	290.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0059656_58	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0059656_58	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0059656_58	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-0059656_59	UniRef90_UPI001D0AEE1A	213.0	0	bacteriophage abortive infection AbiH family protein	N/A
eggNOG-mapper	UHGV-0059656_59	457412.RSAG_00966	128.0	1.13e-30	Bacteriophage abortive infection AbiH	N/A
PADLOC	UHGV-0059656_59	AbiH	62.0	9.8e-18	AbiH	Abi
Pfam	UHGV-0059656_59	PF14253	N/A	N/A	Bacteriophage abortive infection AbiH	AbiH
structural_annotation	UHGV-0059656_59	PF14253	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0059656	Yes	35,413	56	100	1
UHGV-1520876	No	35,444	56	100	1
UHGV-1531854	No	35,222	56	99	1
UHGV-1964027	No	28,023	56	79	1
UHGV-0132402	No	23,467	58	66	1
UHGV-1543994	No	22,352	58	63	1
UHGV-1933739	No	17,782	57	46	1
UHGV-1823160	No	14,593	57	35	1
UHGV-0133069	No	11,220	60	32	1