vOTU vOTU-067482

vOTU: vOTU-067482

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-067482
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira → Lachnospira eligens_A
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00117 → vGENUS-00172 → vSUBGEN-14235 → vOTU-067482
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira → Lachnospira eligens_A
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1538927
Biosample ID	N/A
Genome length (bp)	35,124 bps
CheckV completeness	92.54% (High-quality)
CDS count	44
CDS density	89.43%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira → Lachnospira eligens_A	Total connections	1367	Host agreement	70.23
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira → Lachnospira eligens_A	Total connections	267	Host agreement	91.76

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 92.54)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1538927_1	K07273	100.3	2.6e-29	acm; lysozyme	N/A
PHROG	UHGV-1538927_1	phrog_291	85.2	9.6e-25	endolysin	lysis
UniRef90	UHGV-1538927_1	UniRef90_A0A174PB89	347.0	0	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	N/A
eggNOG-mapper	UHGV-1538927_1	515620.EUBELI_01316	114.0	5.21e-26	Glycoside Hydrolase Family 25-like lysozyme endolysin	N/A
Pfam	UHGV-1538927_1	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-1538927_1	PF08230	N/A	N/A	CW_7 repeat	CW_7
COG	UHGV-1538927_1	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
PHROG	UHGV-1538927_2	phrog_1129	72.9	2.9e-21	holin	lysis
UniRef90	UHGV-1538927_2	UniRef90_UPI000E5CE6BF	162.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-1538927_2	411461.DORFOR_00721	100.0	1e-26	N/A	N/A
Pfam	UHGV-1538927_2	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1538927_2	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-1538927_3	phrog_1863	54.9	1.3e-16	N/A	unknown function
UniRef90	UHGV-1538927_3	UniRef90_UPI001D0865D2	83.2	3.17e-19	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-1538927_3	1226322.HMPREF1545_04027	83.6	2.94e-20	N/A	N/A
PHROG	UHGV-1538927_5	phrog_2566	45.6	0.000000000001	N/A	unknown function
PHROG	UHGV-1538927_6	phrog_6616	164.2	0	tail protein	tail
UniRef90	UHGV-1538927_6	UniRef90_A0A8D9PGP3	724.0	0	Minor structural protein	N/A
eggNOG-mapper	UHGV-1538927_6	1232453.BAIF02000058_gene1641	268.0	0	Phage minor structural protein	N/A
COG	UHGV-1538927_6	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1538927_6	PF16466,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1538927_7	phrog_1401	64.2	2e-18	N/A	unknown function
UniRef90	UHGV-1538927_7	UniRef90_UPI0007099B7A	68.9	0.00000000000244	N/A	N/A
eggNOG-mapper	UHGV-1538927_7	1294142.CINTURNW_1705	57.8	0.00000000841	N/A	N/A
structural_annotation	UHGV-1538927_7	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-1538927_8	phrog_1194	82.4	4.5e-24	N/A	unknown function
eggNOG-mapper	UHGV-1538927_8	33035.JPJF01000093_gene2242	155.0	0	N/A	N/A
structural_annotation	UHGV-1538927_8	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1538927_9	phrog_1535	287.0	0	tail length tape measure protein	tail
UniRef90	UHGV-1538927_9	UniRef90_R6TDK7	354.0	0	Phage-related protein-like protein	N/A
eggNOG-mapper	UHGV-1538927_9	717606.PaecuDRAFT_3132	348.0	0	Phage-related minor tail protein	N/A
COG	UHGV-1538927_9	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1538927_9	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1538927_10	phrog_8355	105.7	1.5e-31	N/A	unknown function
UniRef90	UHGV-1538927_10	UniRef90_UPI0006BBA9AA	128.0	1.22e-36	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-1538927_10	1151292.QEW_2424	105.0	7.02e-29	N/A	N/A
PHROG	UHGV-1538927_11	phrog_8300	66.8	2.8e-19	N/A	unknown function
eggNOG-mapper	UHGV-1538927_11	1151292.QEW_2425	58.5	0.00000000122	N/A	N/A
structural_annotation	UHGV-1538927_11	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-1538927_12	phrog_820	117.3	8.8e-35	major tail protein	tail
UniRef90	UHGV-1538927_12	UniRef90_T3DDR1	172.0	0	Phage major tail 2 family protein	N/A
eggNOG-mapper	UHGV-1538927_12	1151292.QEW_2426	172.0	0	N/A	N/A
structural_annotation	UHGV-1538927_12	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1538927_13	phrog_2595	79.3	4e-23	head-tail connector protein	connector
UniRef90	UHGV-1538927_13	UniRef90_UPI001D068DAC	134.0	5.31e-38	minor capsid protein	N/A
eggNOG-mapper	UHGV-1538927_13	742740.HMPREF9474_03510	122.0	4.49e-34	N/A	N/A
Pfam	UHGV-1538927_13	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-1538927_13	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1538927_14	phrog_556	59.7	4.2e-17	minor head protein	head and packaging
eggNOG-mapper	UHGV-1538927_14	483218.BACPEC_01151	144.0	7.79122e-43	N/A	N/A
PHROG	UHGV-1538927_15	phrog_8710	123.9	6.2e-37	N/A	unknown function
eggNOG-mapper	UHGV-1538927_15	33035.JPJF01000093_gene2249	104.0	1.14e-27	N/A	N/A
structural_annotation	UHGV-1538927_15	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1538927_16	phrog_541	72.9	4.2e-21	head-tail adaptor	connector
eggNOG-mapper	UHGV-1538927_16	1304866.K413DRAFT_0783	145.0	3.19496e-43	N/A	N/A
PHROG	UHGV-1538927_17	phrog_422	262.7	0	major head protein	head and packaging
UniRef90	UHGV-1538927_17	UniRef90_A0A3D5M0U8	503.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-1538927_17	663278.Ethha_1589	377.0	0	N/A	N/A
structural_annotation	UHGV-1538927_17	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1538927_18	phrog_2303	138.6	4.69996e-41	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-1538927_18	483218.BACPEC_01156	127.0	1.37e-33	N/A	N/A
PHROG	UHGV-1538927_19	phrog_872	168.7	0	N/A	unknown function
UniRef90	UHGV-1538927_19	UniRef90_A0A413P9Z7	217.0	0	N/A	N/A
eggNOG-mapper	UHGV-1538927_19	573413.Spirs_2170	178.0	0	N/A	N/A
Pfam	UHGV-1538927_19	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-1538927_19	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-1538927_19	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-1538927_22	phrog_581	245.4	0	minor head protein	head and packaging
UniRef90	UHGV-1538927_22	UniRef90_A0A413YU28	645.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-1538927_22	33035.JPJF01000093_gene2255	438.0	0	N/A	N/A
Pfam	UHGV-1538927_22	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1538927_22	COG5585	N/A	N/A	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	N/A
structural_annotation	UHGV-1538927_22	PF06152,PF03496,NF041404	N/A	N/A	N/A	N/A
PHROG	UHGV-1538927_23	phrog_533	281.5	0	portal protein	head and packaging
UniRef90	UHGV-1538927_23	UniRef90_A0A356C6G5	744.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-1538927_23	742740.HMPREF9474_03501	577.0	0	N/A	N/A
structural_annotation	UHGV-1538927_23	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1538927_24	K06909	93.0	3.7e-27	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1538927_24	phrog_2	71.1	2.2e-20	terminase large subunit	head and packaging
UniRef90	UHGV-1538927_24	UniRef90_A0A413YU24	954.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1538927_24	1391647.AVSV01000003_gene1802	524.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1538927_24	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1538927_24	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1538927_24	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-1538927_25	K07474	152.9	2.8026e-45	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1538927_25	phrog_51	160.8	0	terminase small subunit	head and packaging
UniRef90	UHGV-1538927_25	UniRef90_A0A413YU49	370.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-1538927_25	1499683.CCFF01000014_gene3916	149.0	1.05938e-42	Terminase small subunit	N/A
Pfam	UHGV-1538927_25	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1538927_25	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1538927_25	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-1538927_26	phrog_36	65.9	7.7e-19	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-1538927_26	397290.C810_01391	105.0	5.83e-27	N/A	N/A
structural_annotation	UHGV-1538927_26	PF02996	N/A	N/A	N/A	N/A
PHROG	UHGV-1538927_27	phrog_625	69.5	3.1e-20	N/A	unknown function
UniRef90	UHGV-1538927_27	UniRef90_A0A413YU40	244.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1538927_27	397290.C810_01502	125.0	1.97e-35	N/A	N/A
structural_annotation	UHGV-1538927_27	PF12961,COG2028	N/A	N/A	N/A	N/A
PHROG	UHGV-1538927_29	phrog_8684	115.6	3.3e-34	N/A	unknown function
UniRef90	UHGV-1538927_29	UniRef90_A0A3D2KEV6	147.0	2.42425e-43	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1538927_29	411470.RUMGNA_02199	79.0	8.02e-17	N/A	N/A
Pfam	UHGV-1538927_29	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-1538927_29	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-1538927_32	phrog_15077	96.1	6.4e-28	N/A	unknown function
UniRef90	UHGV-1538927_32	UniRef90_A0A174WLY0	219.0	0	N/A	N/A
eggNOG-mapper	UHGV-1538927_32	483218.BACPEC_01165	228.0	0	N/A	N/A
structural_annotation	UHGV-1538927_32	PF11300,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-1538927_33	phrog_8470	281.8	0	N/A	unknown function
UniRef90	UHGV-1538927_33	UniRef90_UPI00164C094F	199.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-1538927_33	483218.BACPEC_01166	377.0	0	PcfJ-like protein	N/A
Pfam	UHGV-1538927_33	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-1538927_33	PF14284	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1538927_34	483218.BACPEC_01167	206.0	0	N/A	N/A
structural_annotation	UHGV-1538927_36	PF19962,NF011863	N/A	N/A	N/A	N/A
KOfam	UHGV-1538927_37	K03469	66.5	5.3e-19	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-1538927_37	phrog_531	64.4	2e-18	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1538927_37	UniRef90_A0A413YU26	269.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1538927_37	941824.TCEL_01720	75.5	0.00000000000000333	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-1538927_37	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-1538927_37	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-1538927_37	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-1538927_38	phrog_3584	242.6	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1538927_38	UniRef90_A0A4P8IFK4	346.0	0	N/A	N/A
eggNOG-mapper	UHGV-1538927_38	742741.HMPREF9475_00404	296.0	0	N/A	N/A
structural_annotation	UHGV-1538927_38	PF21578	N/A	N/A	N/A	N/A
UniRef90	UHGV-1538927_39	UniRef90_A0A356C6A4	154.0	0	HTH_17 domain-containing protein	N/A
eggNOG-mapper	UHGV-1538927_39	318464.IO99_13850	65.5	0.000000000000379	Helix-turn-helix domain	N/A
Pfam	UHGV-1538927_39	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-1538927_39	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
structural_annotation	UHGV-1538927_39	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-1538927_40	K18830	43.6	0.000000000006	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1538927_40	phrog_8	41.4	0.000000000028	transcriptional regulator	transcription regulation
UniRef90	UHGV-1538927_40	UniRef90_A0A356C4L0	115.0	7.99e-33	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1538927_40	1035189.HMPREF9954_1968	48.1	0.00000104	sequence-specific DNA binding	N/A
Pfam	UHGV-1538927_40	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1538927_40	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1538927_40	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1538927_41	K22300	56.1	8.1e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1538927_41	phrog_2967	57.4	2.5e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-1538927_41	UniRef90_A0A3D5LQZ9	233.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1538927_41	1211819.CALK01000005_gene2436	73.2	0.0000000000000394	Peptidase S24-like	N/A
PADLOC	UHGV-1538927_41	retron_type_VI_hth_cluster2_1	40.3	0.000000000069	N/A	Retron
Pfam	UHGV-1538927_41	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1538927_41	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1538927_41	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1538927_42	phrog_20936	51.0	0.000000000000027	N/A	unknown function
UniRef90	UHGV-1538927_42	UniRef90_UPI0013E038FD	54.3	0.0000000463	ImmA/IrrE family metallo-endopeptidase	N/A
structural_annotation	UHGV-1538927_42	PF06114	N/A	N/A	N/A	N/A
PHROG	UHGV-1538927_43	phrog_1847	339.8	0	N/A	unknown function
UniRef90	UHGV-1538927_43	UniRef90_A0A174S171	676.0	0	Membrane-bound metallopeptidase	N/A
eggNOG-mapper	UHGV-1538927_43	483218.BACPEC_01182	623.0	0	T5orf172	N/A
Pfam	UHGV-1538927_43	PF13455	N/A	N/A	Meiotically up-regulated gene 113	MUG113
COG	UHGV-1538927_43	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1538927_43	PF13250,NF041454	N/A	N/A	N/A	N/A
KOfam	UHGV-1538927_44	K14059	223.4	0	int; integrase	N/A
PHROG	UHGV-1538927_44	phrog_1	211.1	0	integrase	integration and excision
UniRef90	UHGV-1538927_44	UniRef90_R6AKI6	812.0	0	Site-specific recombinase phage integrase family	N/A
eggNOG-mapper	UHGV-1538927_44	536233.CLO_0855	400.0	0	Arm DNA-binding domain	N/A
Pfam	UHGV-1538927_44	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-1538927_44	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1538927_44	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1538927_44	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1538927_44	PF00589,PF14659,PF14657,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1538927	Yes	35,124	38	93	1
UHGV-0082165	No	34,765	38	92	1