vOTU vOTU-067565

vOTU: vOTU-067565

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-067565
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter → ERR7738219_bin.160
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00146 → vGENUS-00309 → vSUBGEN-36321 → vOTU-067565
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter → Mediterraneibacter faecis
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0004864
Biosample ID	SAMEA4766011
Genome length (bp)	34,805 bps
CheckV completeness	98.62% (High-quality)
CDS count	52
CDS density	91.98%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter → Mediterraneibacter faecis	Total connections	249	Host agreement	71.89
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter → ERR7738219_bin.160	Total connections	10	Host agreement	70

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 98.62)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0004864_1	phrog_2158	163.8	0	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0004864_1	UniRef90_A0A415L598	397.0	0	Abi family protein	N/A
eggNOG-mapper	UHGV-0004864_1	626523.GCWU000342_01051	234.0	0	Abi-like protein	N/A
PADLOC	UHGV-0004864_1	AbiD	113.2	5e-33	AbiD	Abi
Pfam	UHGV-0004864_1	PF07751	N/A	N/A	Abi-like protein	Abi_2
COG	UHGV-0004864_1	COG4823	N/A	N/A	Abortive infection bacteriophage resistance protein	N/A
structural_annotation	UHGV-0004864_1	PF07751,COG4823	N/A	N/A	N/A	N/A
KOfam	UHGV-0004864_3	K07273	181.9	0	acm; lysozyme	N/A
PHROG	UHGV-0004864_3	phrog_291	138.7	4.49999e-41	endolysin	lysis
UniRef90	UHGV-0004864_3	UniRef90_A0A564SYY2	706.0	0	Glycosyl hydrolases family 25	N/A
eggNOG-mapper	UHGV-0004864_3	515620.EUBELI_01316	202.0	0	Glycoside Hydrolase Family 25-like lysozyme endolysin	N/A
Pfam	UHGV-0004864_3	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0004864_3	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0004864_3	PF01183,NF003627,COG3757,COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0004864_4	PF13384,NF001074,COG3677	N/A	N/A	N/A	N/A
PHROG	UHGV-0004864_5	phrog_1129	84.1	9.3e-25	holin	lysis
UniRef90	UHGV-0004864_5	UniRef90_A0A893W7Y5	144.0	3.58732e-43	Phage holin family protein	N/A
eggNOG-mapper	UHGV-0004864_5	411460.RUMTOR_01325	141.0	1.41952e-42	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0004864_5	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0004864_5	PF16079	N/A	N/A	N/A	N/A
PHROG	UHGV-0004864_6	phrog_4105	92.0	4.6e-27	N/A	unknown function
eggNOG-mapper	UHGV-0004864_6	411459.RUMOBE_00911	177.0	0	N/A	N/A
structural_annotation	UHGV-0004864_8	COG1996	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0004864_9	1268303.RHODMAR_4726	59.3	0.000000169	N/A	N/A
PHROG	UHGV-0004864_11	phrog_5240	60.0	4e-17	tail fiber protein	tail
Pfam	UHGV-0004864_11	PF13472	N/A	N/A	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
structural_annotation	UHGV-0004864_11	PF16255,PF10651,NF041897,TIGR02695	N/A	N/A	N/A	N/A
PHROG	UHGV-0004864_12	phrog_11037	133.4	2.4e-39	N/A	unknown function
UniRef90	UHGV-0004864_12	UniRef90_A0A1Q6K9M8	649.0	0	NlpC/P60 domain-containing protein	N/A
eggNOG-mapper	UHGV-0004864_12	33035.JPJF01000093_gene2240	313.0	0	NlpC/P60 family	N/A
Pfam	UHGV-0004864_12	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-0004864_12	PF05382	N/A	N/A	Bacteriophage peptidoglycan hydrolase	Amidase_5
COG	UHGV-0004864_12	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0004864_12	PF18013,PF05382,NF033742,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0004864_13	phrog_13289	429.1	0	tail protein	tail
UniRef90	UHGV-0004864_13	UniRef90_D4M5A0	1114.0	0	Phage minor structural protein, N-terminal region	N/A
eggNOG-mapper	UHGV-0004864_13	1235798.C817_02568	480.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0004864_13	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0004864_13	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0004864_13	COG2885	N/A	N/A	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	N/A
structural_annotation	UHGV-0004864_13	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0004864_14	phrog_33	64.2	3.2e-18	distal tail protein Dit	tail
UniRef90	UHGV-0004864_14	UniRef90_UPI000E50043B	485.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0004864_14	1232452.BAIB02000007_gene1615	225.0	0	phage tail	N/A
COG	UHGV-0004864_14	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0004864_14	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0004864_15	phrog_1272	211.3	0	tail length tape measure protein	tail
UniRef90	UHGV-0004864_15	UniRef90_A0A373N7M8	1121.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0004864_15	1035184.HMPREF1042_1328	308.0	0	Phage tail tape measure protein	N/A
Pfam	UHGV-0004864_15	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0004864_15	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0004864_15	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
PHROG	UHGV-0004864_18	phrog_88	96.7	2.6e-28	major tail protein	tail
UniRef90	UHGV-0004864_18	UniRef90_D4M596	391.0	0	Phage major tail protein, phi13 family	N/A
Pfam	UHGV-0004864_18	PF04630	N/A	N/A	Phage tail tube protein	Phage_TTP_1
NCBIFam	UHGV-0004864_18	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0004864_18	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0004864_19	phrog_5	47.8	0.00000000000033	tail completion or Neck1 protein	connector
UniRef90	UHGV-0004864_19	UniRef90_D4M595	244.0	0	Phage protein, HK97 gp10 family	N/A
NCBIFam	UHGV-0004864_19	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0004864_19	TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0004864_20	PF05657	N/A	N/A	N/A	N/A
UniRef90	UHGV-0004864_21	UniRef90_D4M593	237.0	0	Phage head-tail adaptor, putative, SPP1 family	N/A
structural_annotation	UHGV-0004864_21	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0004864_22	phrog_749	40.5	0.000000000045	N/A	unknown function
PHROG	UHGV-0004864_23	phrog_10	90.0	2.2e-26	major head protein	head and packaging
UniRef90	UHGV-0004864_23	UniRef90_D4M591	727.0	0	Phage capsid family	N/A
eggNOG-mapper	UHGV-0004864_23	1232452.BAIB02000007_gene1625	472.0	0	Phage capsid family	N/A
Pfam	UHGV-0004864_23	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0004864_23	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0004864_23	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0004864_23	PF05065,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0004864_24	K01358	113.7	2.3e-33	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0004864_24	phrog_94	176.2	0	head maturation protease	head and packaging
UniRef90	UHGV-0004864_24	UniRef90_D4M590	503.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0004864_24	1235792.C808_00085	209.0	0	Clp protease	N/A
Pfam	UHGV-0004864_24	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0004864_24	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0004864_24	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0004864_25	phrog_12	64.9	6e-19	portal protein	head and packaging
UniRef90	UHGV-0004864_25	UniRef90_UPI00156D5DC9	591.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0004864_25	1232452.BAIB02000007_gene1627	278.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0004864_25	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0004864_25	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0004864_25	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0004864_26	phrog_9	260.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0004864_26	UniRef90_D4M588	1130.0	0	Phage terminase-like protein, large subunit	N/A
eggNOG-mapper	UHGV-0004864_26	1232452.BAIB02000007_gene1629	533.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0004864_26	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0004864_26	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0004864_26	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0004864_26	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0004864_27	phrog_5110	102.8	1.9e-30	terminase small subunit	head and packaging
UniRef90	UHGV-0004864_27	UniRef90_A0A1C5LZF0	102.0	8.52e-26	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0004864_27	1211817.CCAT010000008_gene938	82.4	2.52e-18	Phage terminase, small subunit	N/A
Pfam	UHGV-0004864_27	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-0004864_27	COG5484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0004864_27	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
KOfam	UHGV-0004864_28	K07451	48.4	0.00000000000018	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0004864_28	phrog_119	83.1	3.6e-24	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0004864_28	UniRef90_UPI00156F1D4A	203.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0004864_28	1232452.BAIB02000007_gene1631	95.1	6.2e-24	HNH nucleases	N/A
Pfam	UHGV-0004864_28	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0004864_28	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0004864_30	phrog_36	91.3	1.2e-26	transcriptional regulator	transcription regulation
UniRef90	UHGV-0004864_30	UniRef90_A0A373STV4	283.0	0	N/A	N/A
eggNOG-mapper	UHGV-0004864_30	411461.DORFOR_00754	159.0	0	sigma factor activity	N/A
Pfam	UHGV-0004864_30	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-0004864_30	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0004864_30	PF07374,MF_00674,NF007227,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0004864_31	phrog_229	119.9	1.8e-35	MazG-like pyrophosphatase	other
UniRef90	UHGV-0004864_31	UniRef90_A0A373MWT0	256.0	0	Nucleotide pyrophosphohydrolase	N/A
eggNOG-mapper	UHGV-0004864_31	1232666.JANE01000070_gene1288	105.0	1.53e-27	MazG nucleotide pyrophosphohydrolase domain	N/A
Pfam	UHGV-0004864_31	PF03819	N/A	N/A	MazG nucleotide pyrophosphohydrolase domain	MazG
COG	UHGV-0004864_31	COG1694	N/A	N/A	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	N/A
structural_annotation	UHGV-0004864_31	PF03819,MF_01020,TIGR03188,COG1694	N/A	N/A	N/A	N/A
PHROG	UHGV-0004864_35	phrog_7566	112.8	1.2e-33	N/A	unknown function
eggNOG-mapper	UHGV-0004864_35	665950.HMPREF1025_02547	172.0	0	N/A	N/A
eggNOG-mapper	UHGV-0004864_36	1196322.A370_05726	65.9	0.000000000000582	N/A	N/A
PHROG	UHGV-0004864_37	phrog_15077	93.7	3.4e-27	N/A	unknown function
UniRef90	UHGV-0004864_37	UniRef90_A0A3A6HZA9	233.0	0	N/A	N/A
eggNOG-mapper	UHGV-0004864_37	1280698.AUJS01000007_gene1019	380.0	0	N/A	N/A
structural_annotation	UHGV-0004864_37	PF11300,NF033725	N/A	N/A	N/A	N/A
PHROG	UHGV-0004864_38	phrog_8470	231.4	0	N/A	unknown function
UniRef90	UHGV-0004864_38	UniRef90_UPI001C01E393	584.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0004864_38	1280698.AUJS01000007_gene1018	859.0	0	N/A	N/A
Pfam	UHGV-0004864_38	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0004864_38	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0004864_39	phrog_4433	68.7	3.1e-25	N/A	unknown function
eggNOG-mapper	UHGV-0004864_39	1280698.AUJS01000007_gene1017	209.0	0	N/A	N/A
structural_annotation	UHGV-0004864_39	PF12120,NF000318	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0004864_40	1280698.AUJS01000007_gene1016	229.0	0	N/A	N/A
KOfam	UHGV-0004864_41	K03469	53.0	0.0000000000000068	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0004864_41	phrog_531	56.9	4e-16	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0004864_41	UniRef90_A0A373MPV2	291.0	0	Ribonuclease HI	N/A
eggNOG-mapper	UHGV-0004864_41	665950.HMPREF1025_02551	159.0	0	RNase H	N/A
Pfam	UHGV-0004864_41	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0004864_41	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0004864_41	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-0004864_42	phrog_3584	154.8	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0004864_42	665950.HMPREF1025_02552	315.0	0	N/A	N/A
structural_annotation	UHGV-0004864_42	PF21578,NF041486	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0004864_46	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-0004864_47	phrog_16447	175.0	0	N/A	unknown function
UniRef90	UHGV-0004864_47	UniRef90_A0A8E3SN40	155.0	1.4013e-45	N/A	N/A
eggNOG-mapper	UHGV-0004864_47	1403390.U3PDZ3_9CAUD	126.0	6.88e-35	N/A	N/A
Pfam	UHGV-0004864_47	PF10083	N/A	N/A	N/A	DUF2321
structural_annotation	UHGV-0004864_47	PF10083,COG4306	N/A	N/A	N/A	N/A
UniRef90	UHGV-0004864_48	UniRef90_A0A352P178	78.2	6.25e-18	zinc_ribbon_2 domain-containing protein (Fragment)	N/A
structural_annotation	UHGV-0004864_48	PF13248	N/A	N/A	N/A	N/A
KOfam	UHGV-0004864_51	K18830	71.1	1.5e-20	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0004864_51	phrog_4	52.7	0.000000000000011	transcriptional repressor	transcription regulation
UniRef90	UHGV-0004864_51	UniRef90_A0A374EB41	243.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0004864_51	445972.ANACOL_03315	142.0	3.81013e-42	N/A	N/A
Pfam	UHGV-0004864_51	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0004864_51	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0004864_51	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0004864	Yes	34,805	42	99	1