vOTU vOTU-067606

vOTU: vOTU-067606

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-067606
Number of genomes	7
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira → Lachnospira sp900545725
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-03870 → vGENUS-13437 → vSUBGEN-21586 → vOTU-067606
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira
Host range breadth	Genus
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-2085723
Biosample ID	SAMEA3708573
Genome length (bp)	39,457 bps
CheckV completeness	99.90% (High-quality)
CDS count	55
CDS density	84.59%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira	Total connections	39	Host agreement	94.87
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira → Lachnospira sp900545725	Total connections	18	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-2085723_1	phrog_962	78.0	1.3e-22	holin	lysis
UniRef90	UHGV-2085723_1	UniRef90_A0A1C6BVF7	99.8	1.01e-25	Small integral membrane protein	N/A
eggNOG-mapper	UHGV-2085723_1	887929.HMP0721_1251	93.6	7.01e-24	Bacteriophage holin	N/A
Pfam	UHGV-2085723_1	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-2085723_1	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-2085723_1	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2085723_1	COG5546	N/A	N/A	N/A	N/A
PHROG	UHGV-2085723_2	phrog_1193	53.3	0.0000000000000043	hemolysin	other
UniRef90	UHGV-2085723_2	UniRef90_U5MTV0	71.6	0.00000000000000825	Hemolysin XhlA	N/A
eggNOG-mapper	UHGV-2085723_2	1345695.CLSA_c29710	71.6	0.00000000000000138	Haemolysin XhlA	N/A
Pfam	UHGV-2085723_2	PF10779	N/A	N/A	Haemolysin XhlA	XhlA
PHROG	UHGV-2085723_4	phrog_6616	161.7	0	tail protein	tail
UniRef90	UHGV-2085723_4	UniRef90_A0A356C4L7	587.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-2085723_4	1294142.CINTURNW_1706	312.0	0	Phage minor structural protein	N/A
COG	UHGV-2085723_4	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-2085723_4	PF16466,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-2085723_7	phrog_1194	77.8	1.1e-22	N/A	unknown function
eggNOG-mapper	UHGV-2085723_7	33035.JPJF01000093_gene2242	163.0	0	N/A	N/A
structural_annotation	UHGV-2085723_7	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-2085723_8	phrog_1535	315.0	0	tail length tape measure protein	tail
UniRef90	UHGV-2085723_8	UniRef90_A0A1C5RGR7	481.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-2085723_8	33035.JPJF01000093_gene2243	489.0	0	phage tail tape measure protein	N/A
COG	UHGV-2085723_8	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-2085723_8	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-2085723_9	phrog_8355	104.5	3.2e-31	N/A	unknown function
UniRef90	UHGV-2085723_9	UniRef90_UPI0006BBA9AA	122.0	1.05e-33	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-2085723_9	1117108.PAALTS15_13522	107.0	1.64e-28	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-2085723_9	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-2085723_9	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-2085723_10	phrog_8300	66.5	3.5e-19	N/A	unknown function
eggNOG-mapper	UHGV-2085723_10	1151292.QEW_2425	58.2	0.00000000178	N/A	N/A
structural_annotation	UHGV-2085723_10	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-2085723_11	phrog_820	113.7	1.2e-33	major tail protein	tail
UniRef90	UHGV-2085723_11	UniRef90_T3DDR1	199.0	0	Phage major tail 2 family protein	N/A
eggNOG-mapper	UHGV-2085723_11	1151292.QEW_2426	199.0	0	N/A	N/A
structural_annotation	UHGV-2085723_11	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-2085723_12	phrog_2595	93.0	2.6e-27	head-tail connector protein	connector
UniRef90	UHGV-2085723_12	UniRef90_UPI001D0627B3	125.0	1.16e-34	minor capsid protein	N/A
eggNOG-mapper	UHGV-2085723_12	742740.HMPREF9474_03510	122.0	4.93e-34	N/A	N/A
Pfam	UHGV-2085723_12	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-2085723_12	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-2085723_13	phrog_556	70.2	2.6e-20	minor head protein	head and packaging
eggNOG-mapper	UHGV-2085723_13	742740.HMPREF9474_03509	139.0	1.02001e-40	N/A	N/A
PHROG	UHGV-2085723_14	phrog_8710	126.1	1.2e-37	N/A	unknown function
eggNOG-mapper	UHGV-2085723_14	742740.HMPREF9474_03508	114.0	1.75e-31	N/A	N/A
structural_annotation	UHGV-2085723_14	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-2085723_15	phrog_541	67.9	1.5e-19	head-tail adaptor	connector
eggNOG-mapper	UHGV-2085723_15	483218.BACPEC_01153	145.0	2.0459e-43	N/A	N/A
PHROG	UHGV-2085723_16	phrog_422	256.7	0	major head protein	head and packaging
UniRef90	UHGV-2085723_16	UniRef90_A0A414W378	484.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-2085723_16	663278.Ethha_1589	367.0	0	N/A	N/A
structural_annotation	UHGV-2085723_16	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-2085723_17	phrog_2303	142.6	2.59941e-42	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-2085723_17	483218.BACPEC_01156	137.0	5.19e-37	N/A	N/A
structural_annotation	UHGV-2085723_17	PF10788,MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-2085723_18	phrog_355	63.7	2.9e-18	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2085723_18	UniRef90_A0A415G5B2	145.0	3.09687e-43	N/A	N/A
eggNOG-mapper	UHGV-2085723_18	1256908.HMPREF0373_00479	142.0	4.00771e-43	N/A	N/A
Pfam	UHGV-2085723_18	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-2085723_18	PF14359	N/A	N/A	N/A	N/A
PHROG	UHGV-2085723_20	phrog_581	240.6	0	minor head protein	head and packaging
UniRef90	UHGV-2085723_20	UniRef90_A0A413YU28	908.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-2085723_20	1282664.H354_06636	466.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-2085723_20	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
structural_annotation	UHGV-2085723_20	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-2085723_21	phrog_533	274.5	0	portal protein	head and packaging
UniRef90	UHGV-2085723_21	UniRef90_A0A3D5LTG9	872.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-2085723_21	33035.JPJF01000093_gene2257	562.0	0	N/A	N/A
structural_annotation	UHGV-2085723_21	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-2085723_22	K06909	82.7	5e-24	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-2085723_22	phrog_2	59.1	1.1e-16	terminase large subunit	head and packaging
UniRef90	UHGV-2085723_22	UniRef90_A0A413RCQ1	659.0	0	Terminase	N/A
eggNOG-mapper	UHGV-2085723_22	552396.HMPREF0863_01628	546.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-2085723_22	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-2085723_22	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-2085723_23	K07474	109.5	5.3e-32	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-2085723_23	phrog_2606	272.7	0	terminase small subunit	head and packaging
UniRef90	UHGV-2085723_23	UniRef90_UPI001F3465DA	256.0	0	terminase small subunit	N/A
eggNOG-mapper	UHGV-2085723_23	1415774.U728_838	229.0	0	terminase, small subunit	N/A
Pfam	UHGV-2085723_23	PF06056	N/A	N/A	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
Pfam	UHGV-2085723_23	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-2085723_23	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
PHROG	UHGV-2085723_24	phrog_36	54.2	0.0000000000000024	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-2085723_24	397290.C810_01391	107.0	1.59e-27	N/A	N/A
structural_annotation	UHGV-2085723_24	PF02996	N/A	N/A	N/A	N/A
KOfam	UHGV-2085723_25	K04763	82.1	8.6e-24	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-2085723_25	phrog_216	121.0	7.2e-36	integrase	integration and excision
UniRef90	UHGV-2085723_25	UniRef90_A0A356C4M9	333.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-2085723_25	1232446.BAIE02000002_gene805	298.0	0	Integrase	N/A
Pfam	UHGV-2085723_25	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2085723_25	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-2085723_25	PF00589,MF_02055,NF040815,COG4973	N/A	N/A	N/A	N/A
UniRef90	UHGV-2085723_26	UniRef90_A0A356C4K0	83.2	2.12e-19	Chemotaxis protein	N/A
eggNOG-mapper	UHGV-2085723_26	1042156.CXIVA_01520	75.1	6.05e-17	N/A	N/A
AcrCatalog	UHGV-2085723_27	cluster_61942	38.1	0.00000017	NA	N/A
PHROG	UHGV-2085723_28	phrog_5781	74.6	1.5e-21	N/A	unknown function
UniRef90	UHGV-2085723_28	UniRef90_A0A3D5LSK2	128.0	2.08e-36	Nucleoside 2-deoxyribosyltransferase	N/A
eggNOG-mapper	UHGV-2085723_28	1321782.HMPREF1986_02257	90.5	3.87e-22	N/A	N/A
Pfam	UHGV-2085723_28	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-2085723_28	PF14359,TIGR02133,COG3613	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2085723_31	796940.HMPREF9628_00167	87.8	7.99e-18	N/A	N/A
COG	UHGV-2085723_31	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-2085723_31	PF01978,MF_01819,TIGR01610,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-2085723_32	K22222	126.9	9.3e-38	cetZ; tubulin-like protein CetZ	N/A
PHROG	UHGV-2085723_32	phrog_17961	104.4	1.2e-30	N/A	unknown function
UniRef90	UHGV-2085723_32	UniRef90_A0A7X4Z3P7	354.0	0	Tubulin domain-containing protein	N/A
eggNOG-mapper	UHGV-2085723_32	1235793.C809_02636	348.0	0	PFAM Tubulin FtsZ	N/A
Pfam	UHGV-2085723_32	PF00091	N/A	N/A	Tubulin/FtsZ family, GTPase domain	Tubulin
COG	UHGV-2085723_32	COG0206	N/A	N/A	Cell division GTPase FtsZ	N/A
structural_annotation	UHGV-2085723_32	PF00091,PF21011,MF_01946,TIGR00065,COG0206	N/A	N/A	N/A	N/A
COG	UHGV-2085723_33	COG1695	N/A	N/A	DNA-binding transcriptional regulator, PadR family	N/A
structural_annotation	UHGV-2085723_33	PF13463,MF_01819,NF008565,COG1846	N/A	N/A	N/A	N/A
KOfam	UHGV-2085723_45	K18830	45.2	0.0000000000011	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-2085723_45	phrog_8	49.4	0.000000000000044	transcriptional regulator	transcription regulation
UniRef90	UHGV-2085723_45	UniRef90_A0A415ZSZ7	186.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-2085723_45	1378168.N510_03177	112.0	5.88e-29	sequence-specific DNA binding	N/A
Pfam	UHGV-2085723_45	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
Pfam	UHGV-2085723_45	PF05600	N/A	N/A	CDK5 regulatory subunit-associated protein 3	CDK5RAP3
COG	UHGV-2085723_45	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2085723_45	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-2085723_46	K22300	60.9	3e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-2085723_46	phrog_4	45.7	0.0000000000014	transcriptional repressor	transcription regulation
UniRef90	UHGV-2085723_46	UniRef90_A0A7C9H8R9	145.0	7.95938e-42	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-2085723_46	641107.CDLVIII_1309	136.0	2.65e-39	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-2085723_46	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2085723_46	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2085723_46	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-2085723_47	phrog_2158	196.9	0	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-2085723_47	UniRef90_B0MB90	290.0	0	Abi-like protein	N/A
eggNOG-mapper	UHGV-2085723_47	411490.ANACAC_00817	290.0	0	Abi-like protein	N/A
PADLOC	UHGV-2085723_47	AbiD	130.1	3.4e-38	AbiD	Abi
Pfam	UHGV-2085723_47	PF07751	N/A	N/A	Abi-like protein	Abi_2
COG	UHGV-2085723_47	COG4823	N/A	N/A	Abortive infection bacteriophage resistance protein	N/A
structural_annotation	UHGV-2085723_47	PF07751,COG4823	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2085723_48	35841.BT1A1_3214	56.2	0.0000000249	N/A	N/A
eggNOG-mapper	UHGV-2085723_49	1410630.JNKP01000001_gene2363	91.7	9.87e-21	N/A	N/A
PHROG	UHGV-2085723_50	phrog_5881	65.6	5.9e-19	N/A	unknown function
structural_annotation	UHGV-2085723_50	PF14524,TIGR04204	N/A	N/A	N/A	N/A
KOfam	UHGV-2085723_51	K06400	343.6	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-2085723_51	phrog_95	385.9	0	integrase	integration and excision
UniRef90	UHGV-2085723_51	UniRef90_A0A7X5D137	664.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-2085723_51	1235793.C809_02624	642.0	0	Recombinase zinc beta ribbon domain	N/A
Pfam	UHGV-2085723_51	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-2085723_51	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-2085723_51	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-2085723_51	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-2085723_51	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-2085723_52	UniRef90_R5QKX6	50.4	0.000000848	(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB	N/A
eggNOG-mapper	UHGV-2085723_52	411461.DORFOR_01519	57.8	0.00000000488	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine	N/A
COG	UHGV-2085723_52	COG0621	N/A	N/A	tRNA A37 methylthiotransferase MiaB	N/A
eggNOG-mapper	UHGV-2085723_53	1567014.A0A0A7S0J5_9VIRU	78.6	1.13e-16	Phage minor structural protein GP20	N/A
KOfam	UHGV-2085723_55	K01934	159.0	0	MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]	N/A
PHROG	UHGV-2085723_55	phrog_6697	46.6	0.00000000000047	N/A	unknown function
UniRef90	UHGV-2085723_55	UniRef90_R7HEL0	201.0	0	5-formyltetrahydrofolate cyclo-ligase	N/A
eggNOG-mapper	UHGV-2085723_55	411474.COPEUT_00246	164.0	0	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family	N/A
Pfam	UHGV-2085723_55	PF01812	N/A	N/A	5-formyltetrahydrofolate cyclo-ligase family	5-FTHF_cyc-lig
NCBIFam	UHGV-2085723_55	TIGR02727.1	N/A	N/A	5-formyltetrahydrofolate cyclo-ligase	N/A
COG	UHGV-2085723_55	COG0212	N/A	N/A	5-formyltetrahydrofolate cyclo-ligase	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-2085723	Yes	39,457	36	100	1
UHGV-0200510	No	21,610	35	55	1
UHGV-0200508	No	16,692	38	43	1
UHGV-1762041	No	16,494	37	42	1
UHGV-1335672	No	15,579	37	41	1
UHGV-1631224	No	13,155	39	34	1
UHGV-1825338	No	12,075	38	32	1