vOTU vOTU-067607

vOTU: vOTU-067607

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-067607
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D bicirculans
Taxonomy (UHGV)	vFAM-00010 → vSUBFAM-00662 → vGENUS-00795 → vSUBGEN-21585 → vOTU-067607
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D bicirculans
Host range breadth	Species
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-0006013
Biosample ID	SAMEA4766051
Genome length (bp)	37,666 bps
CheckV completeness	99.90% (High-quality)
CDS count	50
CDS density	93.93%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D bicirculans	Total connections	240	Host agreement	95.42
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D bicirculans	Total connections	97	Host agreement	97.94

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0006013_1	UniRef90_J7IQK4	196.0	0	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-0006013_1	768704.Desmer_0401	196.0	0	N/A	N/A
PHROG	UHGV-0006013_2	phrog_1914	70.0	3.5e-20	N/A	unknown function
UniRef90	UHGV-0006013_2	UniRef90_UPI001A9A7A19	313.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0006013_2	997296.PB1_16109	149.0	2.49431e-43	N/A	N/A
Pfam	UHGV-0006013_2	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0006013_2	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0006013_2	PF06114,MF_00745,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0006013_3	K22299	54.4	0.000000000000003	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
UniRef90	UHGV-0006013_3	UniRef90_A0A374ERP2	218.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0006013_3	59374.Fisuc_2499	96.3	3.75e-24	sequence-specific DNA binding	N/A
PADLOC	UHGV-0006013_3	retron_type_VI_hth_cluster2_1	41.7	0.000000000023	N/A	Retron
Pfam	UHGV-0006013_3	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0006013_3	COG1426	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0006013_3	PF13560,MF_00535,NF041951,COG1513	N/A	N/A	N/A	N/A
KOfam	UHGV-0006013_4	K07273	195.6	0	acm; lysozyme	N/A
PHROG	UHGV-0006013_4	phrog_291	177.5	0	endolysin	lysis
UniRef90	UHGV-0006013_4	UniRef90_UPI00164453CD	501.0	0	LysM peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0006013_4	877411.JMMA01000002_gene2608	259.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0006013_4	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0006013_4	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0006013_4	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0006013_4	PF01183,PF01476,TIGR02899,COG3757,COG1388	N/A	N/A	N/A	N/A
PHROG	UHGV-0006013_5	phrog_1863	58.2	2.5e-17	N/A	unknown function
eggNOG-mapper	UHGV-0006013_5	1226322.HMPREF1545_04027	72.0	0.00000000000000158	N/A	N/A
PHROG	UHGV-0006013_6	phrog_13256	79.1	3.2e-23	N/A	unknown function
eggNOG-mapper	UHGV-0006013_6	1160721.RBI_II00522	91.7	7.31e-24	N/A	N/A
PHROG	UHGV-0006013_7	phrog_134	44.3	0.0000000000025	N/A	unknown function
UniRef90	UHGV-0006013_7	UniRef90_A0A373VFP4	102.0	6.75e-28	XkdX family protein	N/A
eggNOG-mapper	UHGV-0006013_7	1298920.KI911353_gene543	59.3	0.0000000000177	Phage uncharacterised protein (Phage_XkdX)	N/A
Pfam	UHGV-0006013_7	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
structural_annotation	UHGV-0006013_7	PF09693,TIGR01669	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0006013_9	1410617.JHXH01000006_gene232	85.1	0.0000000000000123	N/A	N/A
structural_annotation	UHGV-0006013_9	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-0006013_11	phrog_9680	55.9	4.9e-17	host range and adsorption protein	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-0006013_11	1160721.RBI_II00526	511.0	0	N/A	N/A
structural_annotation	UHGV-0006013_11	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0006013_12	phrog_1194	87.1	1.7e-25	N/A	unknown function
eggNOG-mapper	UHGV-0006013_12	1160721.RBI_II00527	206.0	0	N/A	N/A
structural_annotation	UHGV-0006013_12	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0006013_13	phrog_1535	308.3	0	tail length tape measure protein	tail
UniRef90	UHGV-0006013_13	UniRef90_R6TDK7	1266.0	0	Phage-related protein-like protein	N/A
eggNOG-mapper	UHGV-0006013_13	1226322.HMPREF1545_00059	436.0	0	tape measure	N/A
COG	UHGV-0006013_13	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0006013_13	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0006013_14	phrog_706	145.6	2.8026e-43	N/A	unknown function
UniRef90	UHGV-0006013_14	UniRef90_A0A1I0K8S4	212.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0006013_14	1449050.JNLE01000003_gene3882	196.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0006013_14	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0006013_14	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0006013_15	phrog_11299	176.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0006013_15	1160721.RBI_II00531	52.4	0.00000362	N/A	N/A
structural_annotation	UHGV-0006013_15	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-0006013_16	phrog_3099	152.4	1.4013e-45	N/A	unknown function
eggNOG-mapper	UHGV-0006013_16	1160721.RBI_II00532	208.0	0	N/A	N/A
structural_annotation	UHGV-0006013_16	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0006013_17	phrog_3266	123.9	7.7e-37	tail completion	connector
eggNOG-mapper	UHGV-0006013_17	411902.CLOBOL_00130	111.0	2.17e-29	N/A	N/A
structural_annotation	UHGV-0006013_17	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0006013_18	phrog_556	122.9	1.2e-36	minor head protein	head and packaging
UniRef90	UHGV-0006013_18	UniRef90_UPI00143BEF55	125.0	4.86e-34	minor capsid protein	N/A
eggNOG-mapper	UHGV-0006013_18	1449050.JNLE01000003_gene3886	107.0	1.28e-27	N/A	N/A
Pfam	UHGV-0006013_18	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0006013_18	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0006013_19	phrog_3366	75.8	5.6e-23	N/A	unknown function
eggNOG-mapper	UHGV-0006013_19	1449050.JNLE01000003_gene3887	84.7	1.36e-19	N/A	N/A
Pfam	UHGV-0006013_19	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0006013_19	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0006013_20	phrog_541	93.2	2.2e-27	head-tail adaptor	connector
UniRef90	UHGV-0006013_20	UniRef90_A0A371AQT0	103.0	4.98e-26	N/A	N/A
eggNOG-mapper	UHGV-0006013_20	1304866.K413DRAFT_3039	94.7	2e-23	N/A	N/A
PHROG	UHGV-0006013_21	phrog_544	348.6	0	major head protein	head and packaging
UniRef90	UHGV-0006013_21	UniRef90_R6T873	669.0	0	Major head protein	N/A
eggNOG-mapper	UHGV-0006013_21	936580.HMPREF1516_0718	318.0	0	N/A	N/A
NCBIFam	UHGV-0006013_21	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0006013_21	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0006013_22	phrog_194	101.3	1.2e-29	head scaffolding protein	head and packaging
UniRef90	UHGV-0006013_22	UniRef90_R6U550	374.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0006013_22	742765.HMPREF9457_02126	156.0	1.4013e-45	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0006013_22	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0006013_22	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0006013_24	phrog_581	335.5	0	minor head protein	head and packaging
UniRef90	UHGV-0006013_24	UniRef90_UPI00189CAB20	1191.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0006013_24	658655.HMPREF0988_02563	406.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0006013_24	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0006013_24	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0006013_24	PF06152,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-0006013_25	phrog_533	345.6	0	portal protein	head and packaging
UniRef90	UHGV-0006013_25	UniRef90_R6TDI6	867.0	0	Phage portal protein SPP1 Gp6-like	N/A
eggNOG-mapper	UHGV-0006013_25	1304866.K413DRAFT_3035	442.0	0	N/A	N/A
structural_annotation	UHGV-0006013_25	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0006013_26	K06909	423.8	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0006013_26	phrog_18557	160.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0006013_26	UniRef90_A0A1C6IMR2	1094.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0006013_26	411461.DORFOR_01162	667.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0006013_26	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0006013_26	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0006013_26	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0006013_26	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0006013_26	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
Pfam	UHGV-0006013_28	PF20505	N/A	N/A	N/A	DUF6731
structural_annotation	UHGV-0006013_28	PF20505	N/A	N/A	N/A	N/A
PHROG	UHGV-0006013_29	phrog_36	64.6	1.9e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0006013_29	UniRef90_A0A371AQR5	54.3	0.00000212	N/A	N/A
eggNOG-mapper	UHGV-0006013_29	1200567.JNKD01000011_gene654	50.8	0.00000661	sigma factor activity	N/A
COG	UHGV-0006013_29	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
KOfam	UHGV-0006013_31	K06919	110.5	1.5e-32	K06919; putative DNA primase/helicase	N/A
PHROG	UHGV-0006013_31	phrog_1829	851.6	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0006013_31	UniRef90_A0A356CZ91	1533.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-0006013_31	1410670.JHXF01000015_gene2274	848.0	0	Phage plasmid primase, P4 family	N/A
Pfam	UHGV-0006013_31	PF08706	N/A	N/A	D5 N terminal like	D5_N
Pfam	UHGV-0006013_31	PF19263	N/A	N/A	N/A	DUF5906
Pfam	UHGV-0006013_31	PF03288	N/A	N/A	Poxvirus D5 protein-like	Pox_D5
NCBIFam	UHGV-0006013_31	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-0006013_31	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-0006013_31	PF08706,PF05272,PF02257,MF_04000,NF011296,COG3378,COG4983	N/A	N/A	N/A	N/A
PHROG	UHGV-0006013_32	phrog_378	100.4	2.1e-29	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0006013_32	UniRef90_A0A373SL44	373.0	0	N/A	N/A
eggNOG-mapper	UHGV-0006013_32	1423807.BACO01000050_gene1454	80.1	3.03e-16	N/A	N/A
Pfam	UHGV-0006013_32	PF05037	N/A	N/A	N/A	DUF669
structural_annotation	UHGV-0006013_32	PF05037,NF004948	N/A	N/A	N/A	N/A
PHROG	UHGV-0006013_33	phrog_5702	79.5	2.1e-23	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0006013_33	UniRef90_A0A373SNE0	207.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0006013_33	1410670.JHXF01000015_gene2271	139.0	2.07995e-41	VRR_NUC	N/A
Pfam	UHGV-0006013_33	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0006013_33	PF03838,MF_00130,NF002585,COG3331	N/A	N/A	N/A	N/A
KOfam	UHGV-0006013_34	K19789	320.6	0	radD; DNA repair protein RadD	N/A
PHROG	UHGV-0006013_34	phrog_16	280.1	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0006013_34	UniRef90_A0A356CZA9	887.0	0	Helicase	N/A
eggNOG-mapper	UHGV-0006013_34	1410670.JHXF01000015_gene2270	590.0	0	helicase	N/A
PADLOC	UHGV-0006013_34	mREase_IV_00005	105.9	8.4e-32	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0006013_34	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0006013_34	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0006013_34	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0006013_34	PF04851,PF00271,MF_01489,TIGR04095,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0006013_35	phrog_2872	246.3	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0006013_35	UniRef90_A0A373VPJ3	398.0	0	ATP-binding protein (Fragment)	N/A
eggNOG-mapper	UHGV-0006013_35	754027.HMPREF9554_00709	219.0	0	N/A	N/A
Pfam	UHGV-0006013_35	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0006013_35	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0006013_36	phrog_253	112.2	3.9e-33	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0006013_36	UniRef90_UPI0019171ADA	120.0	6.83e-31	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0006013_36	386043.lwe2197	72.0	0.000000000000177	Siphovirus Gp157	N/A
Pfam	UHGV-0006013_36	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0006013_36	PF05565,NF002139	N/A	N/A	N/A	N/A
PHROG	UHGV-0006013_37	phrog_15609	98.2	7.3e-29	N/A	unknown function
UniRef90	UHGV-0006013_37	UniRef90_A0A373SLQ6	494.0	0	N/A	N/A
eggNOG-mapper	UHGV-0006013_37	641112.ACOK01000073_gene2872	96.3	1.92e-20	N/A	N/A
structural_annotation	UHGV-0006013_37	PF11300,NF033725	N/A	N/A	N/A	N/A
PHROG	UHGV-0006013_38	phrog_8470	193.5	0	N/A	unknown function
UniRef90	UHGV-0006013_38	UniRef90_UPI0019175B9C	311.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0006013_38	641112.ACOK01000073_gene2870	407.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0006013_38	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0006013_38	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0006013_39	phrog_38338	100.6	1.4e-29	N/A	unknown function
UniRef90	UHGV-0006013_39	UniRef90_UPI00137B3A8C	87.8	1.99e-19	Cas9 inhibitor AcrIIA9 family protein	N/A
eggNOG-mapper	UHGV-0006013_39	641112.ACOK01000073_gene2869	91.7	2.23e-22	N/A	N/A
PHROG	UHGV-0006013_45	phrog_9576	77.8	1.3e-22	N/A	unknown function
UniRef90	UHGV-0006013_45	UniRef90_J9GVA4	67.4	0.00000000000165	N/A	N/A
eggNOG-mapper	UHGV-0006013_45	1074451.CRL705_1686	77.8	4.7e-17	N/A	N/A
UniRef90	UHGV-0006013_47	UniRef90_R6TEQ2	142.0	2.67648e-43	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0006013_47	246199.CUS_5910	120.0	4.55e-35	N/A	N/A
structural_annotation	UHGV-0006013_47	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0006013_48	K01356	121.9	8.3e-36	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0006013_48	phrog_4	132.4	4.2e-39	transcriptional repressor	transcription regulation
UniRef90	UHGV-0006013_48	UniRef90_R6T2B0	427.0	0	Peptidase S24-like protein	N/A
eggNOG-mapper	UHGV-0006013_48	246199.CUS_5911	232.0	0	N/A	N/A
Pfam	UHGV-0006013_48	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
Pfam	UHGV-0006013_48	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0006013_48	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0006013_48	PF00717,PF12844,MF_00015,TIGR00498,TIGR03070,COG1974,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0006013_49	phrog_10292	54.2	5.5e-16	N/A	unknown function
UniRef90	UHGV-0006013_49	UniRef90_R6T9F1	265.0	0	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0006013_49	537013.CLOSTMETH_02269	84.3	4.4e-19	TM2 domain	N/A
Pfam	UHGV-0006013_49	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-0006013_49	COG2314	N/A	N/A	N/A	N/A
KOfam	UHGV-0006013_50	K06400	356.4	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0006013_50	phrog_95	351.3	0	integrase	integration and excision
UniRef90	UHGV-0006013_50	UniRef90_A0A3D4JJV8	421.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0006013_50	537013.CLOSTMETH_01697	414.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0006013_50	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0006013_50	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0006013_50	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0006013_50	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0006013_50	PF00239,PF07508,PF13408,NF041201,COG1961	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0006013	Yes	37,666	45	100	1