vOTU vOTU-067824

vOTU: vOTU-067824

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-067824
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → CAG-353 → CAG-353 sp900066885
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00680 → vGENUS-08238 → vSUBGEN-07730 → vOTU-067824
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → CAG-353 → CAG-353 sp900066885
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0204320
Biosample ID	N/A
Genome length (bp)	35,936 bps
CheckV completeness	99.90% (High-quality)
CDS count	53
CDS density	94.85%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → CAG-353 → CAG-353 sp900066885	Total connections	149	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → CAG-353 → CAG-353 sp900066885	Total connections	56	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0204320_2	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0204320_3	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0204320_4	phrog_5493	115.9	3.3e-34	tail length tape measure protein	tail
UniRef90	UHGV-0204320_4	UniRef90_A0A1C6GMQ4	688.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0204320_4	1504822.CCNO01000012_gene489	162.0	1.38e-38	phage tail tape measure protein	N/A
COG	UHGV-0204320_4	COG5412	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0204320_5	phrog_706	107.9	9.5e-32	N/A	unknown function
UniRef90	UHGV-0204320_5	UniRef90_A0A1C6GMP1	211.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0204320_5	1321782.HMPREF1986_02275	60.1	0.0000000199	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0204320_5	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0204320_5	PF06854	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0204320_6	536233.CLO_0892	55.5	0.0000000393	N/A	N/A
structural_annotation	UHGV-0204320_6	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0204320_7	phrog_820	51.1	0.000000000000017	major tail protein	tail
UniRef90	UHGV-0204320_7	UniRef90_A0A174M1L1	111.0	2.67e-26	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0204320_7	665956.HMPREF1032_02945	94.4	1.56e-21	N/A	N/A
structural_annotation	UHGV-0204320_7	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0204320_8	PF08873	N/A	N/A	N/A	N/A
PHROG	UHGV-0204320_9	phrog_556	75.2	7.3e-22	minor head protein	head and packaging
UniRef90	UHGV-0204320_9	UniRef90_A0A1C6GMA0	105.0	5.56e-27	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0204320_9	1497679.EP56_07750	73.6	0.00000000000000261	Minor capsid protein	N/A
Pfam	UHGV-0204320_9	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0204320_9	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0204320_10	phrog_793	46.5	0.0000000000006	head-tail adaptor	connector
UniRef90	UHGV-0204320_10	UniRef90_A0A1C6GM46	184.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0204320_10	1238184.CM001792_gene97	54.3	0.0000000601	Minor capsid protein	N/A
Pfam	UHGV-0204320_10	PF10665	N/A	N/A	Minor capsid protein	Minor_capsid_1
COG	UHGV-0204320_10	COG5652	N/A	N/A	VanZ-like family protein (function unknown)	N/A
structural_annotation	UHGV-0204320_10	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0204320_11	phrog_541	82.9	3.4e-24	head-tail adaptor	connector
eggNOG-mapper	UHGV-0204320_11	642492.Clole_0822	73.9	0.00000000000000294	N/A	N/A
PHROG	UHGV-0204320_12	phrog_422	226.1	0	major head protein	head and packaging
UniRef90	UHGV-0204320_12	UniRef90_A0A345MKD0	340.0	0	Main capsid protein	N/A
eggNOG-mapper	UHGV-0204320_12	1160721.RBI_II00538	320.0	0	N/A	N/A
structural_annotation	UHGV-0204320_12	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0204320_13	phrog_194	101.7	8.6e-30	head scaffolding protein	head and packaging
UniRef90	UHGV-0204320_13	UniRef90_A0A1C6GGD5	332.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0204320_13	411490.ANACAC_00778	119.0	2.53e-31	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0204320_13	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0204320_13	PF06810,MF_02110	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0204320_14	PF11607,MF_01077,NF037951,COG4568	N/A	N/A	N/A	N/A
PHROG	UHGV-0204320_15	phrog_581	339.6	0	minor head protein	head and packaging
UniRef90	UHGV-0204320_15	UniRef90_A0A1C6GGW2	763.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0204320_15	1151292.QEW_4539	325.0	0	N/A	N/A
Pfam	UHGV-0204320_15	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-0204320_15	PF15542	N/A	N/A	Bacterial toxin 50	Ntox50
COG	UHGV-0204320_15	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0204320_15	PF06152,PF15542	N/A	N/A	N/A	N/A
PHROG	UHGV-0204320_16	phrog_533	344.0	0	portal protein	head and packaging
UniRef90	UHGV-0204320_16	UniRef90_A0A1C6GG74	882.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0204320_16	642492.Clole_0815	349.0	0	N/A	N/A
Pfam	UHGV-0204320_16	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0204320_16	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0204320_17	K06909	405.7	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0204320_17	phrog_3717	156.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0204320_17	UniRef90_A0A1C6GFY7	1080.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0204320_17	411461.DORFOR_01162	597.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0204320_17	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0204320_17	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0204320_17	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0204320_17	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0204320_17	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-0204320_18	cluster_138565	50.8	0.000000000703	NA	N/A
structural_annotation	UHGV-0204320_18	PF15968	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0204320_19	PF20505	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0204320_20	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0204320_21	phrog_16304	81.2	1.8e-23	N/A	unknown function
UniRef90	UHGV-0204320_21	UniRef90_A0A1C6FNF0	246.0	0	N/A	N/A
eggNOG-mapper	UHGV-0204320_21	33035.JPJF01000071_gene4467	75.1	0.000000000000218	N/A	N/A
Pfam	UHGV-0204320_21	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0204320_21	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0204320_22	K03111	116.6	3.6e-34	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0204320_22	phrog_44	128.8	4.2e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0204320_22	UniRef90_A0A1C6GFU4	216.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0204320_22	1384066.JAGT01000001_gene1404	154.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0204320_22	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0204320_22	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0204320_22	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0204320_22	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0204320_22	PF00436,MF_00984,NF005242,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0204320_23	phrog_3490	116.3	2.3e-34	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0204320_23	UniRef90_A0A1C6GFR4	292.0	0	Hef nuclease	N/A
eggNOG-mapper	UHGV-0204320_23	887325.HMPREF0381_0094	120.0	1.24e-32	N/A	N/A
Pfam	UHGV-0204320_23	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-0204320_23	PF03834,NF040956,COG1948	N/A	N/A	N/A	N/A
PHROG	UHGV-0204320_24	phrog_3657	347.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0204320_24	1121864.OMO_02139	217.0	0	N/A	N/A
KOfam	UHGV-0204320_25	K10906	85.3	3.4e-28	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	N/A
PHROG	UHGV-0204320_25	phrog_412	214.8	0	exonuclease VIII	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0204320_25	UniRef90_A0A1C6GFL6	549.0	0	Exodeoxyribonuclease 8	N/A
eggNOG-mapper	UHGV-0204320_25	641147.HMPREF9021_02702	128.0	7.6e-33	N/A	N/A
Pfam	UHGV-0204320_25	PF12684	N/A	N/A	N/A	DUF3799
COG	UHGV-0204320_25	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0204320_25	PF12684,MF_03030,TIGR01896,COG2887	N/A	N/A	N/A	N/A
KOfam	UHGV-0204320_28	K00390	98.1	1.1e-29	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0204320_28	phrog_424	103.2	9.5e-31	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0204320_28	UniRef90_UPI001D091C0C	689.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0204320_28	1291050.JAGE01000002_gene3264	358.0	0	sulfate reduction	N/A
Pfam	UHGV-0204320_28	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0204320_28	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0204320_28	PF01507,MF_00064,NF010367,COG0175	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0204320_30	MF_00273	N/A	N/A	N/A	N/A
PHROG	UHGV-0204320_32	phrog_5079	71.8	6.8e-21	N/A	unknown function
eggNOG-mapper	UHGV-0204320_32	1122143.AUEG01000001_gene582	57.0	0.000000000126	N/A	N/A
UniRef90	UHGV-0204320_33	UniRef90_A0A352A2H2	56.2	0.0000000177	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0204320_33	929506.CbC4_1187	57.4	0.00000000107	N/A	N/A
UniRef90	UHGV-0204320_38	UniRef90_UPI00164C9F56	60.8	0.0000000000752	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0204320_38	929506.CbC4_1187	60.5	0.0000000000193	N/A	N/A
structural_annotation	UHGV-0204320_38	PF05339,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0204320_39	K07727	49.1	0.00000000000015	K07727; putative transcriptional regulator	N/A
UniRef90	UHGV-0204320_39	UniRef90_A0A1C6GF80	296.0	0	Predicted transcriptional regulator	N/A
eggNOG-mapper	UHGV-0204320_39	1235793.C809_00679	63.5	0.0000000000589	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0204320_39	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0204320_39	PF12844,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0204320_40	phrog_87	75.0	8.2e-22	metallo-protease	other
UniRef90	UHGV-0204320_40	UniRef90_A0A7X9BSM0	140.0	5.45e-40	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0204320_40	1507.HMPREF0262_00423	108.0	4.17e-28	IrrE N-terminal-like domain	N/A
COG	UHGV-0204320_40	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0204320_40	PF06114,COG2856	N/A	N/A	N/A	N/A
UniRef90	UHGV-0204320_41	UniRef90_UPI001EDE047F	151.0	1.06e-39	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0204320_41	411902.CLOBOL_02557	124.0	3.43e-30	N/A	N/A
structural_annotation	UHGV-0204320_41	PF06152	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0204320_42	PF19495,TIGR03931	N/A	N/A	N/A	N/A
KOfam	UHGV-0204320_43	K06400	358.0	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0204320_43	phrog_95	338.9	0	integrase	integration and excision
UniRef90	UHGV-0204320_43	UniRef90_A0A1C6GEY5	947.0	0	Resolvase, N terminal domain	N/A
eggNOG-mapper	UHGV-0204320_43	537013.CLOSTMETH_02040	330.0	0	N/A	N/A
Pfam	UHGV-0204320_43	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0204320_43	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0204320_43	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0204320_43	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0204320_43	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0204320_45	phrog_9773	41.5	0.000000000018	replication initiation O-like	DNA, RNA and nucleotide metabolism
structural_annotation	UHGV-0204320_45	PF19481,PF01978,MF_01909,NF040939,COG5625	N/A	N/A	N/A	N/A
UniRef90	UHGV-0204320_48	UniRef90_A0A3D4JL20	680.0	0	N/A	N/A
eggNOG-mapper	UHGV-0204320_48	573061.Clocel_2347	92.0	7.29e-18	N/A	N/A
Pfam	UHGV-0204320_48	PF13154	N/A	N/A	N/A	DUF3991
Pfam	UHGV-0204320_48	PF13155	N/A	N/A	Toprim-like	Toprim_2
COG	UHGV-0204320_48	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0204320_48	PF13362,PF01807,MF_00974,TIGR01391,COG0358	N/A	N/A	N/A	N/A
UniRef90	UHGV-0204320_50	UniRef90_A0A3D4JN93	167.0	0	Plasmid mobilization relaxosome protein MobC	N/A
eggNOG-mapper	UHGV-0204320_50	546269.HMPREF0389_00247	56.2	0.0000000127	Bacterial mobilization protein MobC	N/A
structural_annotation	UHGV-0204320_50	PF19514,NF010432	N/A	N/A	N/A	N/A
PHROG	UHGV-0204320_51	phrog_26285	107.7	8.5e-32	N/A	unknown function
UniRef90	UHGV-0204320_51	UniRef90_A0A1C6BSJ7	469.0	0	Relaxase/Mobilisation nuclease domain	N/A
eggNOG-mapper	UHGV-0204320_51	397290.C810_04517	130.0	3.44e-30	Relaxase/Mobilisation nuclease domain	N/A
Pfam	UHGV-0204320_51	PF03432	N/A	N/A	Relaxase/Mobilisation nuclease domain	Relaxase
COG	UHGV-0204320_51	COG3843	N/A	N/A	Type IV secretory pathway, VirD2 component (relaxase)	N/A
structural_annotation	UHGV-0204320_51	PF03432,NF040665,COG3843	N/A	N/A	N/A	N/A
UniRef90	UHGV-0204320_52	UniRef90_U4R308	62.4	0.0000000000916	HPr kinase	N/A
eggNOG-mapper	UHGV-0204320_52	394503.Ccel_2245	65.1	0.00000000000134	phosphocarrier protein HPr	N/A
COG	UHGV-0204320_52	COG1925	N/A	N/A	HPr or related phosphotransfer protein	N/A
structural_annotation	UHGV-0204320_52	PF00381,NF010352,COG1925	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0204320	Yes	35,936	46	100	1
UHGV-2224085	No	22,476	45	66	1
UHGV-1930895	No	12,395	43	26	1