vOTU vOTU-068074

vOTU: vOTU-068074

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-068074
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter → Mediterraneibacter faecis
Taxonomy (UHGV)	vFAM-00010 → vSUBFAM-00004 → vGENUS-00083 → vSUBGEN-20305 → vOTU-068074
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae
Host range breadth	Family
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1391696
Biosample ID	SAMEA2581920
Genome length (bp)	42,064 bps
CheckV completeness	92.18% (High-quality)
CDS count	68
CDS density	91.91%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae	Total connections	270	Host agreement	97.78
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter → Mediterraneibacter faecis	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 92.18)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1391696_2	phrog_541	93.0	1.5e-27	head-tail adaptor	connector
eggNOG-mapper	UHGV-1391696_2	476272.RUMHYD_01778	114.0	6.24e-30	N/A	N/A
PHROG	UHGV-1391696_3	phrog_419	96.7	2.9e-28	N/A	unknown function
UniRef90	UHGV-1391696_3	UniRef90_A0A4U9RIR3	117.0	2.23e-32	N/A	N/A
eggNOG-mapper	UHGV-1391696_3	476272.RUMHYD_03324	120.0	1.95e-34	N/A	N/A
PHROG	UHGV-1391696_4	phrog_18218	134.6	2.69999e-40	N/A	unknown function
UniRef90	UHGV-1391696_4	UniRef90_A0A8D9PGR5	149.0	9.80909e-45	Holin	N/A
eggNOG-mapper	UHGV-1391696_4	411902.CLOBOL_03424	89.0	1.81e-21	N/A	N/A
structural_annotation	UHGV-1391696_4	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-1391696_5	phrog_3366	102.8	2.4e-30	N/A	unknown function
eggNOG-mapper	UHGV-1391696_5	476272.RUMHYD_01779	162.0	0	N/A	N/A
structural_annotation	UHGV-1391696_5	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1391696_6	phrog_3266	87.0	1.8e-25	tail completion	connector
eggNOG-mapper	UHGV-1391696_6	476272.RUMHYD_01781	148.0	2.53635e-43	N/A	N/A
structural_annotation	UHGV-1391696_6	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1391696_7	phrog_3099	115.5	4.4e-34	N/A	unknown function
eggNOG-mapper	UHGV-1391696_7	33035.JPJF01000106_gene3126	191.0	0	N/A	N/A
structural_annotation	UHGV-1391696_7	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1391696_8	phrog_11299	80.6	2e-23	N/A	unknown function
eggNOG-mapper	UHGV-1391696_8	411459.RUMOBE_01382	74.3	0.00000000000000463	N/A	N/A
structural_annotation	UHGV-1391696_8	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1391696_9	phrog_706	107.3	1.3e-31	N/A	unknown function
UniRef90	UHGV-1391696_9	UniRef90_UPI001C0F2CC6	284.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-1391696_9	411459.RUMOBE_01383	207.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1391696_9	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1391696_9	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1391696_10	phrog_1535	340.3	0	tail length tape measure protein	tail
UniRef90	UHGV-1391696_10	UniRef90_A0A1C5P271	538.0	0	Chromosome segregation protein	N/A
eggNOG-mapper	UHGV-1391696_10	411459.RUMOBE_01384	511.0	0	phage tail tape measure protein	N/A
COG	UHGV-1391696_10	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1391696_11	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
KOfam	UHGV-1391696_12	K08131	52.1	0.0000000000000014	COL9A; collagen type IX alpha	N/A
PHROG	UHGV-1391696_12	phrog_6616	469.3	0	tail protein	tail
UniRef90	UHGV-1391696_12	UniRef90_A0A2V2D052	2435.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-1391696_12	1121866.AUGK01000003_gene1439	249.0	0	Phage minor structural protein	N/A
Pfam	UHGV-1391696_12	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-1391696_12	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1391696_12	PF05113,PF01835,PF03921,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1391696_14	phrog_9589	49.8	0.000000000000069	endolysin	lysis
UniRef90	UHGV-1391696_14	UniRef90_A0A412SB50	501.0	0	SH3b domain-containing protein	N/A
eggNOG-mapper	UHGV-1391696_14	476272.RUMHYD_01851	233.0	0	Putative peptidoglycan binding domain	N/A
Pfam	UHGV-1391696_14	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-1391696_14	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-1391696_14	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-1391696_14	PF08239,PF09953,NF040678,COG3942,COG4991	N/A	N/A	N/A	N/A
KOfam	UHGV-1391696_15	K06400	290.1	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1391696_15	phrog_95	323.0	0	integrase	integration and excision
UniRef90	UHGV-1391696_15	UniRef90_A0A2V2D7K6	988.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-1391696_15	33035.JPJF01000109_gene439	673.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1391696_15	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1391696_15	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1391696_15	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1391696_15	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1391696_15	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-1391696_16	phrog_215	51.8	0.00000000000001	structural protein with Ig domain	head and packaging
eggNOG-mapper	UHGV-1391696_16	180332.JTGN01000005_gene2952	105.0	5.53e-21	domain, Protein	N/A
Pfam	UHGV-1391696_16	PF02368	N/A	N/A	Bacterial Ig-like domain (group 2)	Big_2
COG	UHGV-1391696_16	COG2382	N/A	N/A	Enterochelin esterase or related enzyme	N/A
KOfam	UHGV-1391696_18	K18830	47.7	0.0000000000002	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1391696_18	phrog_4	44.0	0.0000000000048	transcriptional repressor	transcription regulation
UniRef90	UHGV-1391696_18	UniRef90_A0A2V2D6D5	161.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1391696_18	1235790.C805_00012	103.0	6.11e-27	Helix-turn-helix domain	N/A
Pfam	UHGV-1391696_18	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1391696_18	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1391696_18	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1391696_23	phrog_7964	220.8	0	N/A	unknown function
UniRef90	UHGV-1391696_23	UniRef90_A0A285PUH1	137.0	1.26e-36	Trimeric LpxA-like	N/A
eggNOG-mapper	UHGV-1391696_23	665950.HMPREF1025_02555	108.0	2.95e-26	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
Pfam	UHGV-1391696_23	PF18836	N/A	N/A	YdcK Beta solenoid repeat	B_solenoid_ydck
COG	UHGV-1391696_23	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
structural_annotation	UHGV-1391696_23	NF040481	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1391696_29	NF011879	N/A	N/A	N/A	N/A
UniRef90	UHGV-1391696_30	UniRef90_R6RDX0	76.6	4.32e-17	Arginyl-tRNA synthetase	N/A
PHROG	UHGV-1391696_31	phrog_2872	171.9	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1391696_31	UniRef90_UPI0015715A02	281.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1391696_31	1256908.HMPREF0373_00658	247.0	0	AAA domain	N/A
structural_annotation	UHGV-1391696_31	TIGR01618	N/A	N/A	N/A	N/A
PHROG	UHGV-1391696_32	phrog_18107	246.5	0	N/A	unknown function
eggNOG-mapper	UHGV-1391696_32	1256908.HMPREF0373_00659	227.0	0	N/A	N/A
structural_annotation	UHGV-1391696_32	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-1391696_33	phrog_3490	157.3	0	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1391696_33	UniRef90_R9KEE1	260.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1391696_33	1256908.HMPREF0373_00660	264.0	0	N/A	N/A
Pfam	UHGV-1391696_33	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-1391696_33	PF03834,NF040956,COG1948	N/A	N/A	N/A	N/A
KOfam	UHGV-1391696_34	K02316	67.4	2.2e-19	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-1391696_34	phrog_11992	155.7	0	N/A	unknown function
UniRef90	UHGV-1391696_34	UniRef90_A0A395X7I4	308.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-1391696_34	476272.RUMHYD_01741	183.0	0	CHC2 zinc finger	N/A
PADLOC	UHGV-1391696_34	drt-UG29	54.6	9.6e-16	DRT	DRT
Pfam	UHGV-1391696_34	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-1391696_34	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-1391696_34	PF01807,PF00401	N/A	N/A	N/A	N/A
PHROG	UHGV-1391696_35	phrog_8841	559.6	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1391696_35	UniRef90_A0A412EL97	1222.0	0	N/A	N/A
eggNOG-mapper	UHGV-1391696_35	476272.RUMHYD_01742	775.0	0	N/A	N/A
Pfam	UHGV-1391696_35	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-1391696_35	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-1391696_35	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1391696_35	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1391696_36	NF010187	N/A	N/A	N/A	N/A
UniRef90	UHGV-1391696_37	UniRef90_A0A6L8SWV5	140.0	8.22002e-42	Winged helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1391696_37	37659.JNLN01000001_gene2302	49.3	0.00000829	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-1391696_37	PF13412	N/A	N/A	Winged helix-turn-helix DNA-binding	HTH_24
COG	UHGV-1391696_37	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1391696_37	PF01726,COG0640	N/A	N/A	N/A	N/A
PHROG	UHGV-1391696_38	phrog_17690	125.2	2.4e-37	N/A	unknown function
eggNOG-mapper	UHGV-1391696_38	476272.RUMHYD_03925	175.0	0	N/A	N/A
UniRef90	UHGV-1391696_40	UniRef90_A0A373P4I4	62.8	0.0000000000429	Winged helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-1391696_40	PF12840	N/A	N/A	Helix-turn-helix domain	HTH_20
structural_annotation	UHGV-1391696_40	PF01726,COG0640	N/A	N/A	N/A	N/A
KOfam	UHGV-1391696_41	K00390	81.3	7.6e-24	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1391696_41	phrog_424	115.8	3.3e-34	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1391696_41	UniRef90_UPI000CF96674	462.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-1391696_41	1232452.BAIB02000007_gene1640	333.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-1391696_41	BrxP_00001	72.3	4.8e-23	BrxP	BREX
Pfam	UHGV-1391696_41	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1391696_41	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1391696_41	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1391696_42	1131462.DCF50_p1314	67.8	0.00000000000318	N/A	N/A
structural_annotation	UHGV-1391696_44	NF041197	N/A	N/A	N/A	N/A
PHROG	UHGV-1391696_45	phrog_4601	43.6	0.0000000000029	N/A	unknown function
structural_annotation	UHGV-1391696_45	PF17888	N/A	N/A	N/A	N/A
UniRef90	UHGV-1391696_47	UniRef90_A0A395XB56	122.0	1.65e-33	N/A	N/A
PHROG	UHGV-1391696_48	phrog_20593	65.1	9.4e-19	N/A	unknown function
PHROG	UHGV-1391696_49	phrog_874	178.6	0	N/A	unknown function
UniRef90	UHGV-1391696_49	UniRef90_C4IFC5	208.0	0	Upf86.8	N/A
eggNOG-mapper	UHGV-1391696_49	632245.CLP_1629	208.0	0	N/A	N/A
structural_annotation	UHGV-1391696_49	PF04266,MF_00684,NF003443,COG4405	N/A	N/A	N/A	N/A
PHROG	UHGV-1391696_50	phrog_8684	84.4	9.2e-25	N/A	unknown function
UniRef90	UHGV-1391696_50	UniRef90_UPI0015712E85	149.0	8.68805e-44	YopX family protein	N/A
eggNOG-mapper	UHGV-1391696_50	457412.RSAG_01162	86.3	2.27e-19	YopX protein	N/A
Pfam	UHGV-1391696_50	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-1391696_50	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-1391696_50	PF09643,TIGR01671	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1391696_59	411459.RUMOBE_01385	50.1	0.00000148	N/A	N/A
AcrCatalog	UHGV-1391696_59	cluster_11670	78.2	6.1e-22	NA	N/A
KOfam	UHGV-1391696_60	K06909	384.9	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1391696_60	phrog_3717	151.4	4.2039e-45	terminase large subunit	head and packaging
UniRef90	UHGV-1391696_60	UniRef90_A0A6L8SYJ6	868.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1391696_60	33035.JPJF01000106_gene3136	506.0	0	Terminase small subunit	N/A
Pfam	UHGV-1391696_60	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1391696_60	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1391696_60	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1391696_60	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1391696_60	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1391696_61	phrog_374	161.8	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1391696_61	UniRef90_A0A7X5CGS1	236.0	0	AP2/ERF domain-containing protein	N/A
eggNOG-mapper	UHGV-1391696_61	411462.DORLON_00791	154.0	4.2039e-45	N/A	N/A
structural_annotation	UHGV-1391696_61	PF00847	N/A	N/A	N/A	N/A
PHROG	UHGV-1391696_62	phrog_533	285.3	0	portal protein	head and packaging
UniRef90	UHGV-1391696_62	UniRef90_A0A1C6CDM8	681.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-1391696_62	33035.JPJF01000106_gene3135	504.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-1391696_62	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1391696_63	phrog_556	96.3	2e-28	minor head protein	head and packaging
UniRef90	UHGV-1391696_63	UniRef90_UPI001C0ECC47	259.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1391696_63	1449343.JQLQ01000002_gene1329	57.4	0.0000000103	Minor capsid protein	N/A
Pfam	UHGV-1391696_63	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1391696_63	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1391696_64	phrog_581	232.2	0	minor head protein	head and packaging
UniRef90	UHGV-1391696_64	UniRef90_UPI001C0EDE82	604.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-1391696_64	476272.RUMHYD_01761	167.0	1.4013e-45	Phage minor capsid protein 2	N/A
Pfam	UHGV-1391696_64	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1391696_64	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1391696_64	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-1391696_65	phrog_3754	104.2	1.1e-30	N/A	unknown function
eggNOG-mapper	UHGV-1391696_65	476272.RUMHYD_01764	181.0	0	N/A	N/A
UniRef90	UHGV-1391696_66	UniRef90_A0A395X7A4	181.0	0	CTP synthase	N/A
eggNOG-mapper	UHGV-1391696_66	476272.RUMHYD_01766	122.0	5.31e-35	N/A	N/A
PHROG	UHGV-1391696_67	phrog_21718	131.2	4.5e-39	N/A	unknown function
eggNOG-mapper	UHGV-1391696_67	476272.RUMHYD_01768	131.0	5.62e-37	N/A	N/A
PHROG	UHGV-1391696_68	phrog_22984	99.4	1.8e-29	N/A	unknown function

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1391696	Yes	42,064	40	92	1