vOTU vOTU-068386

vOTU: vOTU-068386

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-068386
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00239 → vGENUS-00650 → vSUBGEN-19124 → vOTU-068386
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1505061
Biosample ID	N/A
Genome length (bp)	33,396 bps
CheckV completeness	94.25% (High-quality)
CDS count	42
CDS density	92.77%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E	Total connections	983	Host agreement	95.63
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	154	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 94.25)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-1505061_1	UniRef90_A0A374N9Y2	368.0	0	N/A	N/A
Pfam	UHGV-1505061_1	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
structural_annotation	UHGV-1505061_1	PF10651,PF08931,TIGR02268	N/A	N/A	N/A	N/A
PHROG	UHGV-1505061_2	phrog_1067	140.4	1.10002e-41	minor head protein	head and packaging
UniRef90	UHGV-1505061_2	UniRef90_A0A348ZBV6	178.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1505061_2	1160721.RBI_I01574	125.0	3e-28	Prophage endopeptidase tail	N/A
Pfam	UHGV-1505061_2	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1505061_2	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1505061_2	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1505061_2	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
UniRef90	UHGV-1505061_3	UniRef90_A0A1G5CPA2	122.0	2.54e-30	Phage-related protein	N/A
eggNOG-mapper	UHGV-1505061_3	1246.JMEA01000006_gene51	69.7	0.000000000024	phage tail	N/A
COG	UHGV-1505061_3	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1505061_3	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1505061_4	phrog_23464	254.5	0	N/A	unknown function
UniRef90	UHGV-1505061_4	UniRef90_A0A1C6JGQ9	186.0	0	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-1505061_4	1378168.N510_03078	182.0	0	Tail tape measure protein, TP901 family	N/A
COG	UHGV-1505061_4	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-1505061_4	COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1505061_6	phrog_1021	46.4	0.000000000000053	N/A	unknown function
eggNOG-mapper	UHGV-1505061_6	1321778.HMPREF1982_03556	50.1	0.000004	N/A	N/A
PHROG	UHGV-1505061_7	phrog_885	135.6	3.09999e-40	major tail protein	tail
UniRef90	UHGV-1505061_7	UniRef90_Q894J4	159.0	1.4013e-45	Conserved protein	N/A
eggNOG-mapper	UHGV-1505061_7	1321814.HMPREF9089_00935	170.0	0	N/A	N/A
structural_annotation	UHGV-1505061_7	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1505061_8	PF12691	N/A	N/A	N/A	N/A
UniRef90	UHGV-1505061_9	UniRef90_UPI001A9B6FBF	165.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1505061_9	1414720.CBYM010000040_gene1650	133.0	3.87e-38	N/A	N/A
structural_annotation	UHGV-1505061_9	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1505061_10	phrog_1951	91.7	4.9e-27	head-tail adaptor	connector
UniRef90	UHGV-1505061_10	UniRef90_A0A374MZF9	202.0	0	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-1505061_10	1414720.CBYM010000040_gene1649	66.2	0.00000000000103	head-tail adaptor	N/A
COG	UHGV-1505061_10	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-1505061_10	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1505061_11	phrog_5223	54.9	0.0000000000000013	neck protein	connector
eggNOG-mapper	UHGV-1505061_11	931626.Awo_c31020	48.1	0.00000641	N/A	N/A
NCBIFam	UHGV-1505061_11	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-1505061_11	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1505061_12	phrog_10	152.3	4.2039e-45	major head protein	head and packaging
UniRef90	UHGV-1505061_12	UniRef90_A0A374N9V9	729.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1505061_12	1280689.AUJC01000011_gene1521	326.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-1505061_12	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1505061_12	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1505061_12	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1505061_12	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1505061_13	K01358	119.3	5e-35	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1505061_13	phrog_94	189.3	0	head maturation protease	head and packaging
UniRef90	UHGV-1505061_13	UniRef90_A0A374NBM3	397.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1505061_13	1203606.HMPREF1526_00979	184.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1505061_13	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1505061_13	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1505061_13	PF00574,MF_00444,NF011091,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1505061_14	phrog_21498	297.6	0	N/A	unknown function
UniRef90	UHGV-1505061_14	UniRef90_C7MM70	231.0	0	ParB-like nuclease	N/A
eggNOG-mapper	UHGV-1505061_14	469378.Ccur_02830	231.0	0	DNA binding	N/A
COG	UHGV-1505061_14	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1505061_14	PF05869,TIGR01712	N/A	N/A	N/A	N/A
PHROG	UHGV-1505061_15	phrog_12	180.8	0	portal protein	head and packaging
UniRef90	UHGV-1505061_15	UniRef90_A0A374NAE1	773.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1505061_15	626523.GCWU000342_01027	408.0	0	Portal protein	N/A
Pfam	UHGV-1505061_15	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1505061_15	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1505061_15	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1505061_16	phrog_9	395.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-1505061_16	UniRef90_A0A374NB45	981.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1505061_16	1235793.C809_01917	723.0	0	Phage Terminase	N/A
Pfam	UHGV-1505061_16	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1505061_16	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1505061_16	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1505061_16	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1505061_17	phrog_1066	116.0	1.8e-34	N/A	unknown function
UniRef90	UHGV-1505061_17	UniRef90_A0A0D0SQQ8	86.7	1.76e-19	N/A	N/A
eggNOG-mapper	UHGV-1505061_17	1203606.HMPREF1526_00982	104.0	1.33e-27	N/A	N/A
PHROG	UHGV-1505061_18	phrog_119	53.1	0.0000000000000045	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1505061_18	UniRef90_A0A374N9T6	248.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1505061_18	1235793.C809_01915	121.0	1.31e-33	HNH endonuclease	N/A
COG	UHGV-1505061_18	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1505061_19	PF02796,COG2771	N/A	N/A	N/A	N/A
KOfam	UHGV-1505061_22	K18830	52.8	0.0000000000000098	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1505061_22	phrog_8	64.4	2.6e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-1505061_22	UniRef90_A0A374N9T4	118.0	7.83e-34	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1505061_22	717605.Theco_0106	77.4	2.58e-17	Cro/C1-type HTH DNA-binding domain	N/A
PADLOC	UHGV-1505061_22	retron_type_VI_hth_cluster2_1	40.6	0.000000000069	N/A	Retron
Pfam	UHGV-1505061_22	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1505061_22	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1505061_22	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1505061_25	K06919	103.2	2.6e-30	K06919; putative DNA primase/helicase	N/A
PHROG	UHGV-1505061_25	phrog_1829	828.4	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1505061_25	UniRef90_A0A2N0ULU7	1581.0	0	SF3 helicase domain-containing protein	N/A
eggNOG-mapper	UHGV-1505061_25	1410670.JHXF01000015_gene2274	875.0	0	Phage plasmid primase, P4 family	N/A
Pfam	UHGV-1505061_25	PF08706	N/A	N/A	D5 N terminal like	D5_N
Pfam	UHGV-1505061_25	PF19263	N/A	N/A	N/A	DUF5906
Pfam	UHGV-1505061_25	PF03288	N/A	N/A	Poxvirus D5 protein-like	Pox_D5
NCBIFam	UHGV-1505061_25	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-1505061_25	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-1505061_25	PF08706,PF05272,PF02257,MF_04000,NF011296,COG3378,COG4983	N/A	N/A	N/A	N/A
PHROG	UHGV-1505061_26	phrog_378	129.4	2.6e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1505061_26	UniRef90_A0A374ND86	286.0	0	N/A	N/A
eggNOG-mapper	UHGV-1505061_26	1410670.JHXF01000015_gene2272	166.0	0	N/A	N/A
Pfam	UHGV-1505061_26	PF05037	N/A	N/A	N/A	DUF669
structural_annotation	UHGV-1505061_26	PF05037,NF004948	N/A	N/A	N/A	N/A
PHROG	UHGV-1505061_27	phrog_5702	75.9	1.8e-22	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1505061_27	UniRef90_A0A374N329	211.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-1505061_27	1410670.JHXF01000015_gene2271	153.0	0	VRR_NUC	N/A
Pfam	UHGV-1505061_27	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-1505061_27	PF01870,MF_00130,NF002581,COG1591	N/A	N/A	N/A	N/A
KOfam	UHGV-1505061_28	K19789	319.2	0	radD; DNA repair protein RadD	N/A
PHROG	UHGV-1505061_28	phrog_16	274.4	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1505061_28	UniRef90_A0A374N1T8	889.0	0	Helicase	N/A
eggNOG-mapper	UHGV-1505061_28	1410670.JHXF01000015_gene2270	556.0	0	helicase	N/A
PADLOC	UHGV-1505061_28	mREase_IV_00005	111.5	4e-34	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-1505061_28	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-1505061_28	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1505061_28	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-1505061_28	PF04851,PF00271,MF_01489,TIGR04095,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-1505061_29	phrog_2872	250.7	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1505061_29	UniRef90_UPI001A9B3ECC	524.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1505061_29	754027.HMPREF9554_00709	223.0	0	N/A	N/A
Pfam	UHGV-1505061_29	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-1505061_29	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-1505061_30	phrog_253	101.5	3e-31	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1505061_30	UniRef90_UPI0019171ADA	181.0	0	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-1505061_30	1027396.LMOSA_21290	60.1	0.00000000832	Siphovirus Gp157	N/A
Pfam	UHGV-1505061_30	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-1505061_30	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-1505061_31	phrog_15609	100.1	2.3e-29	N/A	unknown function
UniRef90	UHGV-1505061_31	UniRef90_A0A373SLQ6	154.0	1.03e-40	N/A	N/A
eggNOG-mapper	UHGV-1505061_31	641112.ACOK01000073_gene2872	113.0	8.12e-27	N/A	N/A
structural_annotation	UHGV-1505061_31	PF11300,NF033725	N/A	N/A	N/A	N/A
PHROG	UHGV-1505061_32	phrog_424	85.3	6.6e-25	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-1505061_32	693746.OBV_43240	552.0	0	N/A	N/A
COG	UHGV-1505061_32	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1505061_32	PF01507,MF_00064,TIGR00434,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-1505061_34	phrog_6058	42.6	0.000000000007	N/A	unknown function
structural_annotation	UHGV-1505061_34	NF033787	N/A	N/A	N/A	N/A
KOfam	UHGV-1505061_36	K22300	51.7	0.00000000000002	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1505061_36	phrog_2328	41.7	0.000000000014	transcriptional repressor	transcription regulation
UniRef90	UHGV-1505061_36	UniRef90_A0A373KVP1	107.0	1.17e-27	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1505061_36	525254.HMPREF0072_0267	79.3	1.97e-17	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-1505061_36	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1505061_36	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1505061_36	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1505061_37	UniRef90_A0A374DTF3	122.0	8.14e-33	N/A	N/A
KOfam	UHGV-1505061_38	K14059	106.4	4e-31	int; integrase	N/A
PHROG	UHGV-1505061_38	phrog_1	131.0	1.1e-38	integrase	integration and excision
UniRef90	UHGV-1505061_38	UniRef90_A0A374MXE7	799.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1505061_38	693746.OBV_41260	187.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1505061_38	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1505061_38	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1505061_38	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-1505061_39	K01129	298.8	0	dgt; dGTPase [EC:3.1.5.1]	N/A
PHROG	UHGV-1505061_39	phrog_21998	67.1	2.5e-28	N/A	unknown function
UniRef90	UHGV-1505061_39	UniRef90_R6RD51	967.0	0	Deoxyguanosinetriphosphate triphosphohydrolase	N/A
eggNOG-mapper	UHGV-1505061_39	1027396.LMOSA_6230	332.0	0	deoxyguanosinetriphosphate triphosphohydrolase-like protein	N/A
PADLOC	UHGV-1505061_39	dGTPase	107.9	0	N/A	N/A
Pfam	UHGV-1505061_39	PF01966	N/A	N/A	HD domain	HD
Pfam	UHGV-1505061_39	PF13286	N/A	N/A	Phosphohydrolase-associated domain	HD_assoc
NCBIFam	UHGV-1505061_39	TIGR01353.1	N/A	N/A	dNTP triphosphohydrolase	N/A
COG	UHGV-1505061_39	COG0232	N/A	N/A	dGTP triphosphohydrolase	N/A
structural_annotation	UHGV-1505061_39	PF01966,MF_01212,NF041026,COG0232	N/A	N/A	N/A	N/A
PHROG	UHGV-1505061_40	phrog_25112	217.0	0	N/A	unknown function
UniRef90	UHGV-1505061_40	UniRef90_W7YY71	612.0	0	Kinesin-related protein K4	N/A
eggNOG-mapper	UHGV-1505061_40	1236976.JCM16418_1389	612.0	0	nuclear chromosome segregation	N/A
COG	UHGV-1505061_40	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1505061_40	PF04310,PF12795,MF_00449,NF041034,COG5293	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1505061_41	1449050.JNLE01000003_gene3773	79.7	4.97e-18	N/A	N/A
PHROG	UHGV-1505061_42	phrog_25540	71.4	1.3e-20	N/A	unknown function
eggNOG-mapper	UHGV-1505061_42	913865.DOT_2847	359.0	0	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1505061	Yes	33,396	40	94	1
UHGV-1446154	No	28,006	42	79	1