vOTU vOTU-068475

vOTU: vOTU-068475

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-068475
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium → Faecalibacterium prausnitzii_D
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00013 → vGENUS-12592 → vSUBGEN-19265 → vOTU-068475
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0035993
Biosample ID	SAMEA4969182
Genome length (bp)	39,127 bps
CheckV completeness	92.58% (High-quality)
CDS count	67
CDS density	91.13%
tRNA count	5
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	876	Host agreement	97.26
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium → Faecalibacterium prausnitzii_D	Total connections	5	Host agreement	80

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 92.58)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0035993_1	phrog_5765	58.3	8.6e-17	N/A	unknown function
UniRef90	UHGV-0035993_1	UniRef90_UPI001D0EF465	63.5	0.00000000000258	BC1881 family protein	N/A
eggNOG-mapper	UHGV-0035993_1	1095750.HMPREF9970_1008	56.2	0.000000000244	N/A	N/A
NCBIFam	UHGV-0035993_1	NF033495.1	N/A	N/A	BC1881 family protein	N/A
COG	UHGV-0035993_2	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0035993_2	PF13560,NF040522	N/A	N/A	N/A	N/A
PHROG	UHGV-0035993_4	phrog_3754	99.7	2.6e-29	N/A	unknown function
eggNOG-mapper	UHGV-0035993_4	1235790.C805_00054	109.0	3.71e-29	N/A	N/A
PHROG	UHGV-0035993_5	phrog_21718	87.3	1.8e-25	N/A	unknown function
eggNOG-mapper	UHGV-0035993_5	397290.C810_05210	80.1	8.11e-17	N/A	N/A
PHROG	UHGV-0035993_6	phrog_22984	69.2	5.7e-20	N/A	unknown function
PHROG	UHGV-0035993_7	phrog_16490	195.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0035993_7	397290.C810_01328	136.0	2.19e-35	N/A	N/A
PHROG	UHGV-0035993_8	phrog_20016	204.7	0	N/A	unknown function
UniRef90	UHGV-0035993_8	UniRef90_A0A285PT46	216.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0035993_8	1226322.HMPREF1545_00077	186.0	0	N/A	N/A
structural_annotation	UHGV-0035993_8	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035993_9	PF12510	N/A	N/A	N/A	N/A
KOfam	UHGV-0035993_11	K14059	142.7	4.19969e-42	int; integrase	N/A
PHROG	UHGV-0035993_11	phrog_1	166.8	0	integrase	integration and excision
UniRef90	UHGV-0035993_11	UniRef90_A0A6N7TNQ4	740.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0035993_11	411471.SUBVAR_05137	259.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0035993_11	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0035993_11	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0035993_11	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0035993_12	UniRef90_A0A6N7TLT0	280.0	0	Helix-turn-helix domain-containing protein	N/A
PHROG	UHGV-0035993_15	phrog_888	109.1	4.2e-33	N/A	unknown function
UniRef90	UHGV-0035993_15	UniRef90_A0A6N7TMA2	352.0	0	SHOCT domain-containing protein	N/A
eggNOG-mapper	UHGV-0035993_15	1029718.SFBM_0110	78.2	0.0000000000000145	Short C-terminal domain	N/A
Pfam	UHGV-0035993_15	PF14471	N/A	N/A	N/A	DUF4428
Pfam	UHGV-0035993_15	PF09851	N/A	N/A	Short C-terminal domain	SHOCT
structural_annotation	UHGV-0035993_15	PF15947,PF14471	N/A	N/A	N/A	N/A
PHROG	UHGV-0035993_17	phrog_8	44.0	0.0000000000043	transcriptional regulator	transcription regulation
UniRef90	UHGV-0035993_17	UniRef90_UPI001C020D87	159.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0035993_17	198094.BA_3829	57.8	0.00000000518	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0035993_17	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0035993_17	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0035993_17	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0035993_18	phrog_8	41.0	0.000000000041	transcriptional regulator	transcription regulation
UniRef90	UHGV-0035993_18	UniRef90_UPI001C009F10	114.0	3.92e-32	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0035993_18	699218.HMPREF0889_0208	50.4	0.000000509	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0035993_18	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0035993_18	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0035993_18	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0035993_19	K07741	104.5	2.4e-30	antB; anti-repressor protein	N/A
PHROG	UHGV-0035993_19	phrog_5817	94.9	1.1e-27	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0035993_19	UniRef90_A0A356CZA0	177.0	0	Oxidoreductase	N/A
eggNOG-mapper	UHGV-0035993_19	585501.HMPREF6123_0862	154.0	5.60519e-45	AntA/AntB antirepressor	N/A
Pfam	UHGV-0035993_19	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
COG	UHGV-0035993_19	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-0035993_21	PF12270,NF040944	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035993_22	PF09537	N/A	N/A	N/A	N/A
PHROG	UHGV-0035993_25	phrog_38771	82.8	2.5e-24	N/A	unknown function
PHROG	UHGV-0035993_26	phrog_155	149.8	1.54143e-44	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0035993_26	UniRef90_E2ZNS9	394.0	0	Erf family protein	N/A
eggNOG-mapper	UHGV-0035993_26	748224.HMPREF9436_03360	394.0	0	ERF superfamily	N/A
Pfam	UHGV-0035993_26	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0035993_26	PF04404,COG4712	N/A	N/A	N/A	N/A
KOfam	UHGV-0035993_27	K03111	134.2	1.4e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0035993_27	phrog_44	142.7	1.99965e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0035993_27	UniRef90_A0A6N7TNV3	299.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0035993_27	748224.HMPREF9436_03359	298.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0035993_27	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0035993_27	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0035993_27	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0035993_27	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0035993_27	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0035993_29	phrog_15768	146.4	1.69557e-43	N/A	unknown function
UniRef90	UHGV-0035993_29	UniRef90_A0A3F3JUK4	473.0	0	N/A	N/A
eggNOG-mapper	UHGV-0035993_29	748224.HMPREF9436_03357	228.0	0	N/A	N/A
Pfam	UHGV-0035993_29	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0035993_29	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-0035993_30	phrog_253	119.4	2.6e-35	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0035993_30	UniRef90_E2ZNS5	290.0	0	Siphovirus Gp157	N/A
eggNOG-mapper	UHGV-0035993_30	748224.HMPREF9436_03356	290.0	0	Siphovirus Gp157	N/A
Pfam	UHGV-0035993_30	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0035993_30	PF05565	N/A	N/A	N/A	N/A
KOfam	UHGV-0035993_31	K00571	82.1	4.4e-24	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0035993_31	phrog_16	216.4	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0035993_31	UniRef90_A0A3E2UF94	1625.0	0	DNA methylase N-4	N/A
eggNOG-mapper	UHGV-0035993_31	936573.HMPREF1147_1705	1154.0	0	DEAD-like helicases superfamily	N/A
Pfam	UHGV-0035993_31	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0035993_31	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0035993_31	PF01555,PF16203,PF04851,MF_01821,MF_00472,NF041790,NF008572,COG0553,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0035993_32	phrog_6568	72.8	2.8e-21	N/A	unknown function
eggNOG-mapper	UHGV-0035993_32	1203606.HMPREF1526_00241	61.2	0.0000000000138	N/A	N/A
PHROG	UHGV-0035993_34	phrog_3253	73.8	9.1e-22	N/A	unknown function
UniRef90	UHGV-0035993_34	UniRef90_A0A2J4JRQ6	109.0	1.7e-30	Resolvase	N/A
eggNOG-mapper	UHGV-0035993_34	1151292.QEW_3282	47.4	0.00000159	N/A	N/A
structural_annotation	UHGV-0035993_34	PF18618	N/A	N/A	N/A	N/A
KOfam	UHGV-0035993_36	K03700	89.7	4.2e-26	recU; recombination protein U	N/A
PHROG	UHGV-0035993_36	phrog_843	161.2	0	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0035993_36	UniRef90_A0A1C5P0D5	337.0	0	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-0035993_36	748224.HMPREF9436_03347	341.0	0	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
Pfam	UHGV-0035993_36	PF03838	N/A	N/A	Recombination protein U	RecU
COG	UHGV-0035993_36	COG3331	N/A	N/A	Penicillin-binding protein-related factor A, putative recombinase	N/A
structural_annotation	UHGV-0035993_36	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
PHROG	UHGV-0035993_37	phrog_36	57.0	3.4e-16	transcriptional regulator	transcription regulation
structural_annotation	UHGV-0035993_37	PF07374,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
UniRef90	UHGV-0035993_39	UniRef90_UPI0018CC2891	112.0	4.94e-29	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0035993_39	1235790.C805_00037	108.0	6.17e-28	N/A	N/A
structural_annotation	UHGV-0035993_39	PF04218	N/A	N/A	N/A	N/A
KOfam	UHGV-0035993_40	K06909	142.2	4.60046e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0035993_40	phrog_10250	172.8	0	N/A	unknown function
UniRef90	UHGV-0035993_40	UniRef90_A0A844D8I4	840.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0035993_40	411490.ANACAC_00783	493.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0035993_40	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0035993_40	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0035993_40	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0035993_40	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0035993_40	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0035993_41	phrog_64	119.7	9.8e-36	portal protein	head and packaging
UniRef90	UHGV-0035993_41	UniRef90_A0A6N7TNT3	882.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0035993_41	642492.Clole_2764	81.6	0.0000000000000918	phage portal protein, SPP1	N/A
Pfam	UHGV-0035993_41	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0035993_41	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0035993_43	phrog_2468	81.8	6.2e-24	head morphogenesis	head and packaging
UniRef90	UHGV-0035993_43	UniRef90_A0A6N7TLR7	620.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0035993_43	1504822.CCNO01000013_gene286	114.0	5.24e-25	cell adhesion	N/A
Pfam	UHGV-0035993_43	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0035993_43	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035993_43	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0035993_46	phrog_5	52.2	0.000000000000015	tail completion or Neck1 protein	connector
UniRef90	UHGV-0035993_46	UniRef90_A0A6N7TNP6	273.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0035993_46	1123309.AQYB01000018_gene814	90.1	4.48e-21	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0035993_46	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0035993_46	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035993_48	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0035993_49	phrog_544	146.4	1.90577e-43	major head protein	head and packaging
UniRef90	UHGV-0035993_49	UniRef90_R0BKA1	431.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0035993_49	476272.RUMHYD_01776	325.0	0	N/A	N/A
structural_annotation	UHGV-0035993_49	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0035993_51	phrog_17977	44.3	0.0000000000024	N/A	unknown function
UniRef90	UHGV-0035993_51	UniRef90_A0A844DHJ8	120.0	5.7e-33	Phage head closure protein	N/A
structural_annotation	UHGV-0035993_51	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035993_52	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-0035993_53	phrog_885	71.2	1.2e-20	major tail protein	tail
eggNOG-mapper	UHGV-0035993_53	1111121.HMPREF1247_0789	168.0	0	N/A	N/A
structural_annotation	UHGV-0035993_53	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0035993_56	phrog_28775	124.6	3.5e-37	tail length tape measure protein	tail
UniRef90	UHGV-0035993_56	UniRef90_A0A6N7TLD3	1392.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-0035993_56	411470.RUMGNA_02228	125.0	7.42e-27	tape measure	N/A
Pfam	UHGV-0035993_56	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0035993_56	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0035993_56	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0035993_56	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
UniRef90	UHGV-0035993_57	UniRef90_A0A417QGC1	115.0	1.23e-27	MtfA protein	N/A
eggNOG-mapper	UHGV-0035993_57	1235792.C808_00094	97.8	1.07e-21	phage tail	N/A
COG	UHGV-0035993_57	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0035993_57	PF05709,PF02408,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0035993_58	phrog_3558	205.0	0	tail protein	tail
UniRef90	UHGV-0035993_58	UniRef90_UPI001C01D15B	159.0	3.78e-38	phage tail protein	N/A
eggNOG-mapper	UHGV-0035993_58	1120978.KB894081_gene120	70.9	0.000000000585	Prophage endopeptidase tail	N/A
Pfam	UHGV-0035993_58	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-0035993_58	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0035993_58	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0035993_59	748224.HMPREF9436_01407	257.0	0	COG NOG18825 non supervised orthologous group	N/A
PHROG	UHGV-0035993_61	phrog_1382	52.3	0.0000000000000044	N/A	unknown function
eggNOG-mapper	UHGV-0035993_61	411468.CLOSCI_00272	46.6	0.00000241	N/A	N/A
KOfam	UHGV-0035993_62	K07273	173.3	0	acm; lysozyme	N/A
PHROG	UHGV-0035993_62	phrog_291	148.6	4.76441e-44	endolysin	lysis
UniRef90	UHGV-0035993_62	UniRef90_E2ZES5	340.0	0	Glycosyl hydrolase family 25	N/A
eggNOG-mapper	UHGV-0035993_62	748224.HMPREF9436_00154	340.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0035993_62	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0035993_62	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0035993_62	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0035993_64	phrog_15303	116.8	9.7e-35	N/A	unknown function
Pfam	UHGV-0035993_64	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UniRef90	UHGV-0035993_65	UniRef90_UPI0018835F0C	622.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-0035993_65	411483.FAEPRAA2165_00757	168.0	3.36312e-44	N/A	N/A
structural_annotation	UHGV-0035993_65	PF10651	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0035993	Yes	39,127	55	93	1
UHGV-1764478	No	18,287	55	43	1
UHGV-1693582	No	10,692	56	25	1