vOTU vOTU-068620

vOTU: vOTU-068620

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-068620
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00316 → vGENUS-00408 → vSUBGEN-03867 → vOTU-068620
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0000087
Biosample ID	SAMEA4765796
Genome length (bp)	35,794 bps
CheckV completeness	99.90% (High-quality)
CDS count	55
CDS density	90.90%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis	Total connections	253	Host agreement	95.26
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis	Total connections	103	Host agreement	99.03

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0000087_1	UniRef90_A0A367FT42	112.0	1.89e-30	Enolase	N/A
eggNOG-mapper	UHGV-0000087_1	1007096.BAGW01000036_gene2663	69.3	0.0000000000000357	Phage holin family Hol44, in holin superfamily V	N/A
eggNOG-mapper	UHGV-0000087_3	1033733.CAEK01000007_gene1628	93.6	1.65e-22	N/A	N/A
Pfam	UHGV-0000087_3	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
structural_annotation	UHGV-0000087_3	PF03869,NF041793,COG4691	N/A	N/A	N/A	N/A
PHROG	UHGV-0000087_4	phrog_374	46.5	1.1e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0000087_4	UniRef90_A0A0U5PL36	134.0	2.23e-37	AP2 domain protein	N/A
eggNOG-mapper	UHGV-0000087_4	1304866.K413DRAFT_4685	127.0	2.72e-35	N/A	N/A
PHROG	UHGV-0000087_5	phrog_1129	62.7	4.4e-18	holin	lysis
UniRef90	UHGV-0000087_5	UniRef90_A0A367FT42	172.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0000087_5	1007096.BAGW01000036_gene2663	114.0	4.73e-32	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0000087_5	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0000087_5	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0000087_6	phrog_1863	80.8	8.7e-24	N/A	unknown function
eggNOG-mapper	UHGV-0000087_6	693746.OBV_18260	113.0	5.49e-32	N/A	N/A
KOfam	UHGV-0000087_7	K07273	183.7	0	acm; lysozyme	N/A
PHROG	UHGV-0000087_7	phrog_291	158.7	0	endolysin	lysis
UniRef90	UHGV-0000087_7	UniRef90_A0A367G061	532.0	0	Peptidase_M23 domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0000087_7	411471.SUBVAR_06927	313.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0000087_7	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
Pfam	UHGV-0000087_7	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0000087_7	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0000087_7	PF01551,PF01183,NF040883,COG0739,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0000087_8	phrog_13589	46.2	1.2e-32	N/A	unknown function
eggNOG-mapper	UHGV-0000087_8	742733.HMPREF9469_05009	75.5	0.000000000000436	N/A	N/A
PHROG	UHGV-0000087_9	phrog_13589	183.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0000087_9	428125.CLOLEP_01434	233.0	0	N/A	N/A
PHROG	UHGV-0000087_10	phrog_31538	44.4	0.000000000003	N/A	unknown function
eggNOG-mapper	UHGV-0000087_10	428125.CLOLEP_01433	56.6	0.00000000325	N/A	N/A
structural_annotation	UHGV-0000087_11	PF12245	N/A	N/A	N/A	N/A
PHROG	UHGV-0000087_13	phrog_18444	77.0	1.5e-22	N/A	unknown function
UniRef90	UHGV-0000087_13	UniRef90_UPI00156E9A45	59.7	0.000000000177	peptide chain release factor 2	N/A
eggNOG-mapper	UHGV-0000087_13	1294142.CINTURNW_1707	59.3	0.0000000000421	N/A	N/A
PHROG	UHGV-0000087_14	phrog_18190	93.6	6.2e-33	N/A	unknown function
eggNOG-mapper	UHGV-0000087_14	411471.SUBVAR_06932	313.0	0	N/A	N/A
structural_annotation	UHGV-0000087_14	PF05954,PF00629,PF03424,NF033848,NF033675,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0000087_15	phrog_1194	41.5	0.000000000018	N/A	unknown function
eggNOG-mapper	UHGV-0000087_15	411471.SUBVAR_06933	103.0	7.69e-27	N/A	N/A
structural_annotation	UHGV-0000087_15	PF20458,TIGR02126,COG4718	N/A	N/A	N/A	N/A
PHROG	UHGV-0000087_16	phrog_6900	260.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0000087_16	UniRef90_A0A1C5MMN2	393.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0000087_16	1280698.AUJS01000007_gene1047	384.0	0	nuclear chromosome segregation	N/A
COG	UHGV-0000087_16	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0000087_16	MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-0000087_17	phrog_1633	70.6	7.7e-21	N/A	unknown function
UniRef90	UHGV-0000087_17	UniRef90_UPI000986795C	71.6	0.000000000000101	N/A	N/A
eggNOG-mapper	UHGV-0000087_17	883110.HMPREF9260_00651	60.8	0.000000000265	N/A	N/A
structural_annotation	UHGV-0000087_17	PF17318	N/A	N/A	N/A	N/A
PHROG	UHGV-0000087_18	phrog_1526	79.2	4e-23	N/A	unknown function
UniRef90	UHGV-0000087_18	UniRef90_A0A139QI21	69.7	0.000000000000205	N/A	N/A
eggNOG-mapper	UHGV-0000087_18	879308.HMPREF9130_1240	77.4	2.03e-17	N/A	N/A
PHROG	UHGV-0000087_19	phrog_117	181.6	0	major tail protein	tail
UniRef90	UHGV-0000087_19	UniRef90_A0A1Q6T308	234.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0000087_19	748224.HMPREF9436_00696	219.0	0	domain, Protein	N/A
COG	UHGV-0000087_19	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0000087_19	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0000087_20	phrog_123	65.9	6.9e-19	tail terminator	connector
UniRef90	UHGV-0000087_20	UniRef90_D2BQF4	86.3	1.34e-19	N/A	N/A
eggNOG-mapper	UHGV-0000087_20	1231377.C426_1732	85.9	3.19e-20	N/A	N/A
structural_annotation	UHGV-0000087_20	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-0000087_21	phrog_387	62.6	5.3e-18	neck protein	connector
eggNOG-mapper	UHGV-0000087_21	748224.HMPREF9436_00694	95.9	7.71e-25	N/A	N/A
PHROG	UHGV-0000087_22	phrog_501	70.7	2.1e-20	head closure Hc1	connector
eggNOG-mapper	UHGV-0000087_22	748224.HMPREF9436_00693	174.0	0	N/A	N/A
structural_annotation	UHGV-0000087_22	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0000087_23	phrog_137	55.5	7.7e-16	head-tail adaptor Ad1	connector
UniRef90	UHGV-0000087_23	UniRef90_E2ZGA8	156.0	0	Phage protein Gp19/Gp15/Gp42	N/A
structural_annotation	UHGV-0000087_23	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-0000087_25	phrog_10	137.2	1.50001e-40	major head protein	head and packaging
UniRef90	UHGV-0000087_25	UniRef90_A0A1Y4TJU9	520.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0000087_25	748224.HMPREF9436_00690	452.0	0	Phage capsid family	N/A
Pfam	UHGV-0000087_25	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0000087_25	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0000087_25	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0000087_25	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0000087_26	phrog_194	77.6	2e-22	head scaffolding protein	head and packaging
UniRef90	UHGV-0000087_26	UniRef90_D4K444	160.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0000087_26	748224.HMPREF9436_03336	160.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-0000087_26	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0000087_26	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0000087_28	phrog_193	123.4	3.5e-36	head maturation protease	head and packaging
UniRef90	UHGV-0000087_28	UniRef90_A0A6N8H118	356.0	0	CdiA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0000087_28	748224.HMPREF9436_01469	394.0	0	N/A	N/A
COG	UHGV-0000087_28	COG5529	N/A	N/A	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	N/A
PHROG	UHGV-0000087_29	phrog_104	215.2	0	portal protein	head and packaging
UniRef90	UHGV-0000087_29	UniRef90_A0A3E2U200	743.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0000087_29	748224.HMPREF9436_01468	754.0	0	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-0000087_29	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0000087_30	phrog_9	139.4	2.89999e-41	terminase large subunit	head and packaging
UniRef90	UHGV-0000087_30	UniRef90_UPI001D0087E2	454.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0000087_30	1410630.JNKP01000001_gene1822	627.0	0	phage terminase, large subunit	N/A
COG	UHGV-0000087_30	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0000087_30	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0000087_31	phrog_1066	57.7	1.9e-16	N/A	unknown function
eggNOG-mapper	UHGV-0000087_31	445975.COLSTE_02166	77.4	2.82e-16	N/A	N/A
AcrCatalog	UHGV-0000087_31	cluster_154855	71.6	1.9e-18	NA	N/A
PHROG	UHGV-0000087_32	phrog_338	60.3	4.1e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0000087_32	UniRef90_UPI0015F33F36	177.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0000087_32	748224.HMPREF9436_01465	172.0	0	N/A	N/A
eggNOG-mapper	UHGV-0000087_34	693746.OBV_18010	74.3	0.0000000000000138	N/A	N/A
structural_annotation	UHGV-0000087_34	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0000087_36	phrog_15609	77.4	1.5e-22	N/A	unknown function
eggNOG-mapper	UHGV-0000087_36	641112.ACOK01000073_gene2872	69.7	0.0000000000628	N/A	N/A
structural_annotation	UHGV-0000087_36	PF11300,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-0000087_38	phrog_8470	285.0	0	N/A	unknown function
UniRef90	UHGV-0000087_38	UniRef90_UPI0019580896	184.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0000087_38	1226322.HMPREF1545_00100	192.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0000087_38	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0000087_38	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0000087_39	phrog_36399	51.1	0.000000000000029	N/A	unknown function
PHROG	UHGV-0000087_40	phrog_3584	206.3	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0000087_40	UniRef90_UPI001C02C5E0	159.0	1.21913e-43	N/A	N/A
eggNOG-mapper	UHGV-0000087_40	718252.FP2_16510	145.0	2.18e-39	N/A	N/A
structural_annotation	UHGV-0000087_40	PF01446	N/A	N/A	N/A	N/A
KOfam	UHGV-0000087_52	K22300	44.9	0.0000000000022	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0000087_52	phrog_8	44.8	0.0000000000027	transcriptional regulator	transcription regulation
UniRef90	UHGV-0000087_52	UniRef90_A0A367GFH2	104.0	4.05e-28	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0000087_52	796942.HMPREF9623_01770	57.8	0.00000000608	N/A	N/A
Pfam	UHGV-0000087_52	PF07022	N/A	N/A	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
COG	UHGV-0000087_52	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0000087_52	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0000087_53	K01356	145.1	7.39886e-43	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0000087_53	phrog_4	117.8	1.2e-34	transcriptional repressor	transcription regulation
UniRef90	UHGV-0000087_53	UniRef90_A0A1Q6T3E1	294.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0000087_53	411483.FAEPRAA2165_03041	171.0	0	N/A	N/A
Pfam	UHGV-0000087_53	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0000087_53	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0000087_53	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0000087_53	PF00717,PF01381,MF_00015,TIGR00498,COG2932	N/A	N/A	N/A	N/A
PHROG	UHGV-0000087_54	phrog_38135	69.2	4.2e-20	N/A	unknown function
UniRef90	UHGV-0000087_54	UniRef90_A0A1Q6T359	198.0	0	N/A	N/A
eggNOG-mapper	UHGV-0000087_54	411471.SUBVAR_05869	73.9	0.000000000000737	repeat protein	N/A
Pfam	UHGV-0000087_54	PF14020	N/A	N/A	N/A	DUF4236
COG	UHGV-0000087_54	COG5263	N/A	N/A	Glucan-binding domain (YG repeat)	N/A
structural_annotation	UHGV-0000087_54	PF14020	N/A	N/A	N/A	N/A
KOfam	UHGV-0000087_55	K06400	366.6	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0000087_55	phrog_95	371.6	0	integrase	integration and excision
UniRef90	UHGV-0000087_55	UniRef90_UPI001D0F283A	616.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0000087_55	718252.FP2_01160	592.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0000087_55	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0000087_55	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0000087_55	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0000087_55	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0000087_55	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0000087	Yes	35,794	57	100	1