vOTU vOTU-068657

vOTU: vOTU-068657

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-068657
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00022 → vSUBFAM-00342 → vGENUS-01055 → vSUBGEN-00666 → vOTU-068657
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0109638
Biosample ID	N/A
Genome length (bp)	32,537 bps
CheckV completeness	99.05% (High-quality)
CDS count	50
CDS density	92.70%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira	Total connections	2314	Host agreement	84.18
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira	Total connections	17	Host agreement	76.47

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.05)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0109638_2	K00986	105.8	5.2e-31	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0109638_2	phrog_1423	203.2	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0109638_2	UniRef90_A0A1C5MA91	412.0	0	Retron-type reverse transcriptase	N/A
eggNOG-mapper	UHGV-0109638_2	1160721.RBI_I01568	291.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-0109638_2	icity0040	86.4	5.7e-25	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-0109638_2	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-0109638_2	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-0109638_2	PF00078,MF_01390,TIGR04416,COG3344	N/A	N/A	N/A	N/A
UniRef90	UHGV-0109638_3	UniRef90_UPI00189E384C	82.4	2.02e-17	four helix bundle protein	N/A
eggNOG-mapper	UHGV-0109638_3	525254.HMPREF0072_1280	62.0	0.00000000022	N/A	N/A
structural_annotation	UHGV-0109638_3	PF05635,NF008911	N/A	N/A	N/A	N/A
PHROG	UHGV-0109638_4	phrog_24060	47.0	0.000000000000099	N/A	unknown function
UniRef90	UHGV-0109638_4	UniRef90_A0A7C9H8W0	675.0	0	N/A	N/A
eggNOG-mapper	UHGV-0109638_4	1235797.C816_02837	74.7	0.0000000000086	N/A	N/A
Pfam	UHGV-0109638_4	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0109638_4	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-0109638_5	phrog_19280	109.6	5.9e-34	N/A	unknown function
UniRef90	UHGV-0109638_5	UniRef90_A0A7C9H3D3	228.0	0	BppU_N domain-containing protein	N/A
eggNOG-mapper	UHGV-0109638_5	1160721.RBI_I01572	86.7	2.01e-17	N/A	N/A
PHROG	UHGV-0109638_8	phrog_1067	407.8	0	minor head protein	head and packaging
UniRef90	UHGV-0109638_8	UniRef90_A0A7C9HAK5	1675.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0109638_8	1160721.RBI_I01574	430.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0109638_8	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0109638_8	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0109638_8	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0109638_8	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0109638_9	phrog_33	82.8	7.1e-24	distal tail protein Dit	tail
UniRef90	UHGV-0109638_9	UniRef90_UPI00164BA811	150.0	3.78e-41	phage tail family protein	N/A
eggNOG-mapper	UHGV-0109638_9	1444306.JFZC01000034_gene2623	140.0	3.24e-38	tail component	N/A
COG	UHGV-0109638_9	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0109638_9	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0109638_10	phrog_1272	455.2	0	tail length tape measure protein	tail
UniRef90	UHGV-0109638_10	UniRef90_A0A0M6WZJ0	478.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0109638_10	946235.CAER01000065_gene2435	270.0	0	Phage tail tape measure protein	N/A
Pfam	UHGV-0109638_10	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0109638_10	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0109638_10	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0109638_10	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0109638_11	411902.CLOBOL_03872	68.9	0.00000000000000985	N/A	N/A
eggNOG-mapper	UHGV-0109638_12	411468.CLOSCI_00542	95.5	4.25e-24	N/A	N/A
structural_annotation	UHGV-0109638_12	PF17388	N/A	N/A	N/A	N/A
PHROG	UHGV-0109638_13	phrog_2175	83.2	3.8e-24	protein with Ig domain	other
eggNOG-mapper	UHGV-0109638_13	457421.CBFG_03714	219.0	0	N/A	N/A
structural_annotation	UHGV-0109638_13	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0109638_14	411468.CLOSCI_00544	93.2	5.02e-23	N/A	N/A
structural_annotation	UHGV-0109638_14	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0109638_15	phrog_5	40.3	0.000000000085	tail completion or Neck1 protein	connector
UniRef90	UHGV-0109638_15	UniRef90_A0A7C9LD40	225.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0109638_15	411468.CLOSCI_00545	109.0	2.77e-29	COG NOG18351 non supervised orthologous group	N/A
Pfam	UHGV-0109638_15	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0109638_15	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0109638_16	phrog_1951	72.4	5.5e-21	head-tail adaptor	connector
UniRef90	UHGV-0109638_16	UniRef90_UPI00189EBA11	70.9	0.0000000000000368	phage head closure protein	N/A
eggNOG-mapper	UHGV-0109638_16	491915.Aflv_0668	49.3	0.00000241	head-tail adaptor	N/A
COG	UHGV-0109638_16	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0109638_16	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0109638_17	phrog_5223	83.7	1.3e-24	neck protein	connector
UniRef90	UHGV-0109638_17	UniRef90_A0A7C9LAV1	185.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0109638_17	397290.C810_00423	92.4	4.52e-23	N/A	N/A
UniRef90	UHGV-0109638_18	UniRef90_A0A7C9LC86	166.0	0	SAP domain-containing protein	N/A
Pfam	UHGV-0109638_18	PF02037	N/A	N/A	SAP domain	SAP
COG	UHGV-0109638_18	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-0109638_18	PF14000	N/A	N/A	N/A	N/A
PHROG	UHGV-0109638_19	phrog_10	193.3	0	major head protein	head and packaging
UniRef90	UHGV-0109638_19	UniRef90_A0A7C9L2Y0	756.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0109638_19	397290.C810_00421	496.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0109638_19	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0109638_19	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0109638_19	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0109638_19	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0109638_20	K06904	105.7	6.9e-31	N/A	N/A
PHROG	UHGV-0109638_20	phrog_80	126.3	3.6e-37	head maturation protease	head and packaging
UniRef90	UHGV-0109638_20	UniRef90_A0A7C9L2H1	381.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0109638_20	397290.C810_00420	278.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0109638_20	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
COG	UHGV-0109638_20	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0109638_20	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0109638_21	phrog_12	112.5	3.4e-33	portal protein	head and packaging
UniRef90	UHGV-0109638_21	UniRef90_A0A7C9LEF5	812.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0109638_21	411470.RUMGNA_02063	630.0	0	Phage portal protein	N/A
Pfam	UHGV-0109638_21	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0109638_21	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0109638_21	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0109638_22	phrog_9	367.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0109638_22	UniRef90_A0A7C9KZF1	1074.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0109638_22	397290.C810_00418	951.0	0	Phage Terminase	N/A
Pfam	UHGV-0109638_22	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0109638_22	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0109638_22	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0109638_22	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0109638_23	phrog_1066	106.2	2e-31	N/A	unknown function
eggNOG-mapper	UHGV-0109638_23	411470.RUMGNA_02061	173.0	0	N/A	N/A
structural_annotation	UHGV-0109638_23	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
KOfam	UHGV-0109638_24	K07451	41.0	0.000000000037	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0109638_24	phrog_119	73.6	3e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0109638_24	UniRef90_A0A7C9KZ74	187.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0109638_24	397290.C810_00416	142.0	6.95044e-43	HNH endonuclease	N/A
Pfam	UHGV-0109638_24	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0109638_24	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0109638_25	phrog_1558	156.4	0	N/A	unknown function
UniRef90	UHGV-0109638_25	UniRef90_UPI001EE9266C	158.0	0	sigma-70 region 4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0109638_25	411470.RUMGNA_02058	214.0	0	N/A	N/A
structural_annotation	UHGV-0109638_25	PF08281,MF_00674,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0109638_26	phrog_8684	100.1	4.6e-30	N/A	unknown function
UniRef90	UHGV-0109638_26	UniRef90_A0A6L5YH53	101.0	1.41e-24	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0109638_26	742740.HMPREF9474_03496	74.7	0.0000000000000121	YopX protein	N/A
Pfam	UHGV-0109638_26	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0109638_26	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0109638_26	PF09643,TIGR01671	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0109638_27	397290.C810_01505	151.0	0	N/A	N/A
eggNOG-mapper	UHGV-0109638_29	411470.RUMGNA_02055	49.3	0.00000152	N/A	N/A
KOfam	UHGV-0109638_30	K03497	69.2	1.1e-19	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0109638_30	phrog_15982	236.5	0	N/A	unknown function
UniRef90	UHGV-0109638_30	UniRef90_A0A7C9HAH3	751.0	0	N/A	N/A
eggNOG-mapper	UHGV-0109638_30	411470.RUMGNA_02052	456.0	0	N/A	N/A
Pfam	UHGV-0109638_30	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0109638_30	PF12961	N/A	N/A	N/A	DUF3850
COG	UHGV-0109638_30	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0109638_30	PF12961,PF02195,MF_02015,MF_00684,TIGR04285,NF003443,COG1475,COG3097	N/A	N/A	N/A	N/A
KOfam	UHGV-0109638_31	K03496	165.7	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0109638_31	phrog_164	146.3	2.39622e-43	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0109638_31	UniRef90_A0A7C9H418	521.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0109638_31	397288.C806_00082	276.0	0	AAA domain	N/A
Pfam	UHGV-0109638_31	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0109638_31	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0109638_31	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-0109638_33	K07729	46.4	0.00000000000095	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0109638_33	phrog_8	50.3	0.000000000000061	transcriptional regulator	transcription regulation
UniRef90	UHGV-0109638_33	UniRef90_A0A351Y966	66.2	0.00000000000167	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0109638_33	1304880.JAGB01000002_gene2045	58.9	0.000000000351	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0109638_33	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0109638_33	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0109638_33	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0109638_34	phrog_824	143.6	6.69821e-43	N/A	unknown function
UniRef90	UHGV-0109638_34	UniRef90_A0A7C9H491	246.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0109638_34	411470.RUMGNA_02049	164.0	0	VRR-NUC domain	N/A
Pfam	UHGV-0109638_34	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0109638_34	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-0109638_35	phrog_3584	206.0	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0109638_35	397290.C810_00404	377.0	0	N/A	N/A
structural_annotation	UHGV-0109638_35	PF21578	N/A	N/A	N/A	N/A
PHROG	UHGV-0109638_36	phrog_9958	43.0	0.0000000000036	N/A	unknown function
UniRef90	UHGV-0109638_36	UniRef90_A0A7C9HA55	360.0	0	N/A	N/A
Pfam	UHGV-0109638_36	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0109638_36	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-0109638_37	phrog_26861	128.2	2.5e-38	N/A	unknown function
UniRef90	UHGV-0109638_37	UniRef90_A0A7C9LD13	380.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0109638_37	397290.C810_00400	131.0	5.98e-35	single-stranded DNA binding	N/A
Pfam	UHGV-0109638_37	PF00436	N/A	N/A	Single-strand binding protein family	SSB
COG	UHGV-0109638_37	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0109638_37	PF00436,PF13567,MF_00984,NF004476,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0109638_38	phrog_20014	52.8	0.0000000000000056	N/A	unknown function
eggNOG-mapper	UHGV-0109638_38	1235798.C817_02590	72.8	0.00000000000000155	N/A	N/A
PHROG	UHGV-0109638_39	phrog_6058	57.1	2.5e-16	N/A	unknown function
UniRef90	UHGV-0109638_39	UniRef90_A0A6B9SRW8	69.3	0.0000000000000521	Putative Xis protein	N/A
eggNOG-mapper	UHGV-0109638_39	411468.CLOSCI_01465	72.4	5.16e-16	N/A	N/A
structural_annotation	UHGV-0109638_39	PF12728,NF033787	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0109638_41	PF21662,NF038384,TIGR03090	N/A	N/A	N/A	N/A
UniRef90	UHGV-0109638_44	UniRef90_UPI000F05D0D4	206.0	0	N/A	N/A
eggNOG-mapper	UHGV-0109638_44	411470.RUMGNA_02039	210.0	0	N/A	N/A
Pfam	UHGV-0109638_44	PF10979	N/A	N/A	N/A	DUF2786
PHROG	UHGV-0109638_45	phrog_38056	60.5	1.2e-17	N/A	unknown function
KOfam	UHGV-0109638_48	K18830	58.5	1.9e-16	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0109638_48	phrog_4	54.1	0.0000000000000042	transcriptional repressor	transcription regulation
UniRef90	UHGV-0109638_48	UniRef90_A0A7C9H8R9	152.0	2.8026e-45	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0109638_48	641107.CDLVIII_1309	136.0	7.18e-40	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0109638_48	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0109638_48	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0109638_48	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0109638_49	K23779	63.3	6.1e-18	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-0109638_49	phrog_8	49.5	0.0000000000001	transcriptional regulator	transcription regulation
UniRef90	UHGV-0109638_49	UniRef90_A0A7C9H3W9	119.0	8.09e-34	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0109638_49	742741.HMPREF9475_00399	69.7	0.00000000000000933	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0109638_49	retron_type_VI_hth_cluster2_1	40.7	0.000000000063	N/A	Retron
Pfam	UHGV-0109638_49	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
KOfam	UHGV-0109638_50	K14059	137.6	1.7e-40	int; integrase	N/A
PHROG	UHGV-0109638_50	phrog_1	160.3	0	integrase	integration and excision
UniRef90	UHGV-0109638_50	UniRef90_A0A7C9H3C8	701.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0109638_50	1235792.C808_01553	466.0	0	Phage integrase family	N/A
Pfam	UHGV-0109638_50	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0109638_50	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0109638_50	PF00589,PF13495,MF_02055,TIGR02225,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0109638	Yes	32,537	45	99	1
UHGV-0185511	No	12,584	44	36	1
UHGV-1649767	No	12,584	44	36	1