vOTU vOTU-068799

vOTU: vOTU-068799

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-068799
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-02434 → vGENUS-06440 → vSUBGEN-27406 → vOTU-068799
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Limivivens → Limivivens sp900543575
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2119165
Biosample ID	N/A
Genome length (bp)	36,457 bps
CheckV completeness	91.59% (High-quality)
CDS count	50
CDS density	92.82%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae	Total connections	6	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Limivivens → Limivivens sp900543575	Total connections	11	Host agreement	81.82

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 91.59)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-2119165_1	K06400	257.1	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-2119165_1	phrog_95	282.9	0	integrase	integration and excision
UniRef90	UHGV-2119165_1	UniRef90_A7B3P5	478.0	0	Resolvase, N-terminal domain protein	N/A
eggNOG-mapper	UHGV-2119165_1	658655.HMPREF0988_02600	493.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-2119165_1	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-2119165_1	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-2119165_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-2119165_1	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2119165_2	1047013.AQSP01000130_gene1873	79.0	0.000000000000151	N/A	N/A
UniRef90	UHGV-2119165_3	UniRef90_UPI001BBA5CF0	122.0	2.67e-35	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-2119165_3	1280698.AUJS01000007_gene1001	89.4	5.97e-23	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-2119165_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-2119165_3	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2119165_4	411469.EUBHAL_01996	79.0	1.09e-18	N/A	N/A
KOfam	UHGV-2119165_6	K22300	44.5	0.0000000000022	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-2119165_6	UniRef90_UPI001BC76903	184.0	0	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-2119165_6	411470.RUMGNA_02181	101.0	6.39e-26	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-2119165_6	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-2119165_6	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2119165_6	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-2119165_12	K07741	197.1	0	antB; anti-repressor protein	N/A
PHROG	UHGV-2119165_12	phrog_63	167.6	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-2119165_12	UniRef90_UPI000E507582	379.0	0	phage antirepressor KilAC domain-containing protein	N/A
eggNOG-mapper	UHGV-2119165_12	658655.HMPREF0988_02592	353.0	0	AntA/AntB antirepressor	N/A
Pfam	UHGV-2119165_12	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-2119165_12	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-2119165_12	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-2119165_12	PF03374,PF08346,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A
PHROG	UHGV-2119165_14	phrog_36464	73.2	3.9e-21	N/A	unknown function
eggNOG-mapper	UHGV-2119165_14	742740.HMPREF9474_03484	62.4	0.00000000000563	N/A	N/A
structural_annotation	UHGV-2119165_14	PF09035	N/A	N/A	N/A	N/A
PHROG	UHGV-2119165_20	phrog_3584	196.3	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2119165_20	UniRef90_A0A1I5LZL1	199.0	0	Relaxase/Mobilisation nuclease domain-containing protein	N/A
eggNOG-mapper	UHGV-2119165_20	742740.HMPREF9474_04323	232.0	0	N/A	N/A
structural_annotation	UHGV-2119165_20	PF21578	N/A	N/A	N/A	N/A
KOfam	UHGV-2119165_21	K03469	56.7	5e-16	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-2119165_21	phrog_531	64.2	2.2e-18	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2119165_21	UniRef90_A0A413HZW0	295.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-2119165_21	1235792.C808_03260	95.5	6.31e-23	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-2119165_21	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-2119165_21	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-2119165_21	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-2119165_22	phrog_7566	106.2	1.2e-31	N/A	unknown function
eggNOG-mapper	UHGV-2119165_22	665950.HMPREF1025_02547	106.0	3.72e-28	N/A	N/A
UniRef90	UHGV-2119165_24	UniRef90_A0A3R6TES0	233.0	0	N/A	N/A
eggNOG-mapper	UHGV-2119165_24	1121115.AXVN01000076_gene2619	228.0	0	N/A	N/A
Pfam	UHGV-2119165_24	PF14199	N/A	N/A	N/A	DUF4317
structural_annotation	UHGV-2119165_24	PF14199,MF_00730,NF001557,COG3081	N/A	N/A	N/A	N/A
KOfam	UHGV-2119165_25	K22300	73.0	5.7e-21	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-2119165_25	phrog_8	62.5	9.6e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-2119165_25	UniRef90_UPI000372D520	56.2	0.0000000438	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-2119165_25	1280668.ATVT01000006_gene1322	55.8	0.000000121	Metal dependent phosphohydrolases with conserved 'HD' motif.	N/A
PADLOC	UHGV-2119165_25	retron_type_VI_hth_cluster2_1	52.9	0.0000000000000098	N/A	Retron
Pfam	UHGV-2119165_25	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2119165_25	COG0317	N/A	N/A	(p)ppGpp synthase/hydrolase, HD superfamily	N/A
structural_annotation	UHGV-2119165_25	PF12844,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-2119165_26	K00390	44.7	4.6e-25	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-2119165_26	phrog_424	87.7	7.3e-26	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-2119165_26	UniRef90_A0A373SW63	670.0	0	PAPS_reduct domain-containing protein	N/A
eggNOG-mapper	UHGV-2119165_26	1235800.C819_02256	604.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-2119165_26	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-2119165_26	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-2119165_26	PF01507,MF_00063,TIGR00434,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-2119165_27	phrog_6568	71.2	1e-20	N/A	unknown function
eggNOG-mapper	UHGV-2119165_27	1203606.HMPREF1526_00241	49.3	0.000000429	N/A	N/A
PHROG	UHGV-2119165_28	phrog_36	76.9	3e-22	transcriptional regulator	transcription regulation
UniRef90	UHGV-2119165_28	UniRef90_A0A413HUE6	221.0	0	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-2119165_28	411460.RUMTOR_02080	107.0	5.04e-28	N/A	N/A
Pfam	UHGV-2119165_28	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
structural_annotation	UHGV-2119165_28	PF04545,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-2119165_29	K07451	40.9	0.000000000037	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-2119165_29	phrog_119	79.9	3.1e-23	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2119165_29	UniRef90_A0A413HUG4	208.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-2119165_29	1405.DJ92_863	100.0	2.82e-26	HNH endonuclease	N/A
Pfam	UHGV-2119165_29	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-2119165_29	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-2119165_31	phrog_9	255.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-2119165_31	UniRef90_A0A413HUL5	1059.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-2119165_31	1235798.C817_02581	579.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-2119165_31	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-2119165_31	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-2119165_31	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-2119165_31	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-2119165_32	phrog_12	125.3	3.7e-37	portal protein	head and packaging
UniRef90	UHGV-2119165_32	UniRef90_A0A413HUL0	764.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-2119165_32	86416.Clopa_0339	387.0	0	Phage portal protein	N/A
Pfam	UHGV-2119165_32	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-2119165_32	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-2119165_32	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-2119165_32	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-2119165_33	K01358	119.9	2.8e-35	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-2119165_33	phrog_94	225.6	0	head maturation protease	head and packaging
UniRef90	UHGV-2119165_33	UniRef90_A0A413HU84	501.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-2119165_33	1235792.C808_00085	245.0	0	Clp protease	N/A
Pfam	UHGV-2119165_33	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-2119165_33	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-2119165_33	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-2119165_34	phrog_10	128.2	8.1e-38	major head protein	head and packaging
UniRef90	UHGV-2119165_34	UniRef90_A0A413HUG1	765.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-2119165_34	610130.Closa_0744	381.0	0	Phage capsid family	N/A
Pfam	UHGV-2119165_34	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-2119165_34	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-2119165_34	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-2119165_34	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-2119165_35	phrog_749	76.2	3e-22	N/A	unknown function
UniRef90	UHGV-2119165_35	UniRef90_UPI001C0F1EE0	81.6	3.74e-18	head-tail connector protein	N/A
eggNOG-mapper	UHGV-2119165_35	1211817.CCAT010000053_gene2133	84.0	8.84e-20	N/A	N/A
PHROG	UHGV-2119165_36	phrog_19734	57.5	1.8e-16	N/A	unknown function
eggNOG-mapper	UHGV-2119165_36	349161.Dred_2602	63.2	0.0000000000304	N/A	N/A
structural_annotation	UHGV-2119165_36	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-2119165_37	phrog_5	59.9	6.7e-17	tail completion or Neck1 protein	connector
UniRef90	UHGV-2119165_37	UniRef90_A0A1C6DYP9	154.0	1.4013e-45	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-2119165_37	97139.C824_05967	126.0	9.31e-36	Phage protein, HK97 gp10 family	N/A
Pfam	UHGV-2119165_37	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-2119165_37	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-2119165_37	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-2119165_38	phrog_78	52.8	0.0000000000000075	tail terminator	connector
eggNOG-mapper	UHGV-2119165_38	279010.BL00876	53.9	0.0000000823	N/A	N/A
structural_annotation	UHGV-2119165_38	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-2119165_39	phrog_88	101.6	7.9e-30	major tail protein	tail
eggNOG-mapper	UHGV-2119165_39	508419.F8J168_9CAUD	90.5	3.4e-20	N/A	N/A
NCBIFam	UHGV-2119165_39	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-2119165_39	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2119165_41	906968.Trebr_1128	62.8	0.0000000209	N/A	N/A
KOfam	UHGV-2119165_43	K07741	59.5	1.3e-16	antB; anti-repressor protein	N/A
PHROG	UHGV-2119165_43	phrog_373	136.7	1.50001e-40	anti-repressor	transcription regulation
UniRef90	UHGV-2119165_43	UniRef90_UPI00156F56E8	355.0	0	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-2119165_43	658655.HMPREF0988_02543	284.0	0	Phage regulatory protein	N/A
Pfam	UHGV-2119165_43	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-2119165_43	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-2119165_43	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-2119165_43	PF10552,PF08346,NF008573,COG3561	N/A	N/A	N/A	N/A
KOfam	UHGV-2119165_45	K20478	59.5	6.3e-30	GOLGB1; golgin subfamily B member 1	N/A
PHROG	UHGV-2119165_45	phrog_1533	275.1	0	tail length tape measure protein	tail
UniRef90	UHGV-2119165_45	UniRef90_A0A413I427	1906.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-2119165_45	1235794.C811_01380	301.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-2119165_45	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-2119165_45	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-2119165_45	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-2119165_46	phrog_33	49.8	0.000000000000085	distal tail protein Dit	tail
UniRef90	UHGV-2119165_46	UniRef90_A0A1C6IW65	187.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-2119165_46	1347392.CCEZ01000045_gene7	103.0	2.81e-24	phage tail	N/A
COG	UHGV-2119165_46	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-2119165_46	PF20753,PF19266,TIGR01633,COG4722	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2119165_47	1262449.CP6013_3212	51.6	0.00000339	N/A	N/A
structural_annotation	UHGV-2119165_47	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-2119165_48	phrog_36443	354.9	0	N/A	unknown function
UniRef90	UHGV-2119165_48	UniRef90_UPI001BC2FDF9	555.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-2119165_48	411459.RUMOBE_00923	291.0	0	N/A	N/A
Pfam	UHGV-2119165_48	PF18994	N/A	N/A	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
Pfam	UHGV-2119165_48	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-2119165_48	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
NCBIFam	UHGV-2119165_48	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-2119165_48	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-2119165_48	PF06605,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-2119165_49	phrog_2566	42.8	0.0000000000077	N/A	unknown function
PHROG	UHGV-2119165_50	phrog_16164	62.4	3e-18	N/A	unknown function
eggNOG-mapper	UHGV-2119165_50	33035.JPJF01000093_gene2236	57.0	0.00000018	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-2119165	Yes	36,457	45	92	1
UHGV-0095127	No	12,739	47	32	1
UHGV-0088245	No	12,684	45	32	1