vOTU vOTU-069000

vOTU: vOTU-069000

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-069000
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00316 → vGENUS-02897 → vSUBGEN-25497 → vOTU-069000
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2022631
Biosample ID	SAMEA2737654
Genome length (bp)	35,401 bps
CheckV completeness	91.93% (High-quality)
CDS count	49
CDS density	93.08%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae	Total connections	91	Host agreement	90.11
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis	Total connections	693	Host agreement	98.41

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 91.93)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-2022631_1	K14059	190.8	0	int; integrase	N/A
PHROG	UHGV-2022631_1	phrog_1	196.3	0	integrase	integration and excision
UniRef90	UHGV-2022631_1	UniRef90_UPI00195B6EEA	456.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-2022631_1	1235797.C816_00779	175.0	0	Phage integrase family	N/A
Pfam	UHGV-2022631_1	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-2022631_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2022631_1	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-2022631_1	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-2022631_2	K19370	42.3	0.0000000000074	DNAJC22; DnaJ homolog subfamily C member 22	N/A
PHROG	UHGV-2022631_2	phrog_10292	57.5	1.3e-17	N/A	unknown function
UniRef90	UHGV-2022631_2	UniRef90_UPI001916763D	120.0	2.82e-32	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-2022631_2	665956.HMPREF1032_00562	103.0	2.45e-26	TM2 domain	N/A
Pfam	UHGV-2022631_2	PF13248	N/A	N/A	zinc-ribbon domain	zf-ribbon_3
Pfam	UHGV-2022631_2	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-2022631_2	COG2314	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2022631_2	PF05154,PF12773,MF_00788,NF003161	N/A	N/A	N/A	N/A
UniRef90	UHGV-2022631_3	UniRef90_UPI001C3C137B	378.0	0	N/A	N/A
Pfam	UHGV-2022631_3	PF12686	N/A	N/A	N/A	DUF3800
structural_annotation	UHGV-2022631_3	TIGR00729,COG1039	N/A	N/A	N/A	N/A
PHROG	UHGV-2022631_4	phrog_87	58.3	1.2e-16	metallo-protease	other
UniRef90	UHGV-2022631_4	UniRef90_D1PLA2	209.0	0	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-2022631_4	411471.SUBVAR_05140	209.0	0	N/A	N/A
structural_annotation	UHGV-2022631_4	PF06114,COG2856	N/A	N/A	N/A	N/A
UniRef90	UHGV-2022631_5	UniRef90_UPI001F387172	104.0	1.16e-26	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-2022631_5	742738.HMPREF9460_04037	60.8	0.000000000334	Transcriptional	N/A
COG	UHGV-2022631_5	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
UniRef90	UHGV-2022631_6	UniRef90_D9R8Y9	90.5	7.89e-23	DNA binding domain protein, excisionase family	N/A
eggNOG-mapper	UHGV-2022631_6	610130.Closa_1362	90.5	1.32e-23	Helix-turn-helix domain	N/A
Pfam	UHGV-2022631_6	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-2022631_6	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
structural_annotation	UHGV-2022631_6	PF12728,NF040990,COG3311	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2022631_9	PF00227,MF_02113_A,TIGR03634,COG0638	N/A	N/A	N/A	N/A
PHROG	UHGV-2022631_10	phrog_4583	42.4	0.0000000000095	transcriptional repressor	transcription regulation
UniRef90	UHGV-2022631_10	UniRef90_UPI000A0213FB	85.5	2.4e-20	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-2022631_10	PF08667	N/A	N/A	BetR domain	BetR
structural_annotation	UHGV-2022631_10	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-2022631_11	UniRef90_A0A367GHD7	160.0	0	HTH_17 domain-containing protein	N/A
Pfam	UHGV-2022631_11	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
structural_annotation	UHGV-2022631_13	PF12957	N/A	N/A	N/A	N/A
PHROG	UHGV-2022631_15	phrog_1733	59.5	2.6e-17	N/A	unknown function
UniRef90	UHGV-2022631_15	UniRef90_UPI00196846D9	186.0	0	cell envelope integrity protein TolA	N/A
eggNOG-mapper	UHGV-2022631_15	665956.HMPREF1032_03597	213.0	0	DNA binding	N/A
COG	UHGV-2022631_15	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-2022631_15	PF03677	N/A	N/A	N/A	N/A
KOfam	UHGV-2022631_16	K03546	48.6	0.000000000000076	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-2022631_16	phrog_1499	458.2	0	N/A	unknown function
UniRef90	UHGV-2022631_16	UniRef90_A0A367GHQ5	814.0	0	Chromosome segregation protein SMC	N/A
eggNOG-mapper	UHGV-2022631_16	1235798.C817_04766	508.0	0	AAA ATPase domain	N/A
Pfam	UHGV-2022631_16	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-2022631_16	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-2022631_16	PF11398,MF_00365,TIGR00634,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-2022631_17	phrog_124	229.2	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2022631_17	UniRef90_UPI00122C2B12	523.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-2022631_17	1232449.BAHV02000008_gene618	359.0	0	AAA domain	N/A
Pfam	UHGV-2022631_17	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-2022631_17	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-2022631_18	phrog_2698	189.0	0	N/A	unknown function
UniRef90	UHGV-2022631_18	UniRef90_A0A367GFE7	344.0	0	N/A	N/A
eggNOG-mapper	UHGV-2022631_18	294382.Q5YA95_9CAUD	139.0	2.1e-39	N/A	N/A
structural_annotation	UHGV-2022631_18	PF05037	N/A	N/A	N/A	N/A
KOfam	UHGV-2022631_20	K17677	348.9	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-2022631_20	phrog_16	270.7	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2022631_20	UniRef90_A0A367GH68	1080.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-2022631_20	610130.Closa_1369	762.0	0	DEAD-like helicases superfamily	N/A
PADLOC	UHGV-2022631_20	mREase_IV_00005	137.3	1.3e-40	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-2022631_20	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-2022631_20	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-2022631_20	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-2022631_20	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
KOfam	UHGV-2022631_21	K07505	369.8	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-2022631_21	phrog_2597	1086.0	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2022631_21	UniRef90_A0A367GFF7	1532.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-2022631_21	999413.HMPREF1094_00232	869.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-2022631_21	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-2022631_21	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-2022631_21	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-2022631_21	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-2022631_22	K01160	40.8	0.000000000055	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-2022631_22	phrog_140	91.5	1e-26	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2022631_22	UniRef90_A0A367GHC7	281.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-2022631_22	394503.Ccel_3302	154.0	0	endodeoxyribonuclease RusA	N/A
Pfam	UHGV-2022631_22	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-2022631_22	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-2022631_22	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-2022631_26	phrog_36	75.6	7.1e-22	transcriptional regulator	transcription regulation
UniRef90	UHGV-2022631_26	UniRef90_A0A353BRJ1	95.1	2.2e-22	Sigma70_r4 domain-containing protein	N/A
eggNOG-mapper	UHGV-2022631_26	411471.SUBVAR_05843	138.0	4.24001e-40	N/A	N/A
structural_annotation	UHGV-2022631_26	PF04545,MF_00674,NF009180,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-2022631_27	phrog_1281	107.5	6.8e-32	N/A	unknown function
UniRef90	UHGV-2022631_27	UniRef90_UPI0018AB8273	188.0	0	N/A	N/A
eggNOG-mapper	UHGV-2022631_27	411459.RUMOBE_01368	139.0	5.92e-40	Phage-associated protein	N/A
Pfam	UHGV-2022631_27	PF13274	N/A	N/A	Antitoxin SocA-like, Panacea domain	SocA_Panacea
COG	UHGV-2022631_27	COG3600	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2022631_27	PF13274,COG3600	N/A	N/A	N/A	N/A
PHROG	UHGV-2022631_29	phrog_606	89.4	3.7e-26	terminase small subunit	head and packaging
UniRef90	UHGV-2022631_29	UniRef90_UPI00195648BB	179.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-2022631_29	397290.C810_05185	158.0	0	DNA-packaging protein gp3	N/A
Pfam	UHGV-2022631_29	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-2022631_29	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-2022631_30	K06909	134.9	7.9e-40	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-2022631_30	phrog_2	160.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-2022631_30	UniRef90_A0A367GH60	872.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-2022631_30	1120746.CCNL01000014_gene2093	547.0	0	DNA packaging	N/A
Pfam	UHGV-2022631_30	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-2022631_30	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-2022631_30	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-2022631_30	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-2022631_30	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-2022631_31	phrog_533	359.4	0	portal protein	head and packaging
UniRef90	UHGV-2022631_31	UniRef90_A0A367GFE3	917.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-2022631_31	663278.Ethha_0090	568.0	0	N/A	N/A
Pfam	UHGV-2022631_31	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-2022631_31	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-2022631_32	phrog_581	344.3	0	minor head protein	head and packaging
UniRef90	UHGV-2022631_32	UniRef90_UPI0019583C8A	506.0	0	polymorphic toxin type 50 domain-containing protein	N/A
eggNOG-mapper	UHGV-2022631_32	748224.HMPREF9436_03339	461.0	0	N/A	N/A
Pfam	UHGV-2022631_32	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-2022631_32	PF18810	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2	PBECR2
COG	UHGV-2022631_32	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2022631_32	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-2022631_33	phrog_194	60.6	1.9e-17	head scaffolding protein	head and packaging
UniRef90	UHGV-2022631_33	UniRef90_UPI00195B7610	163.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-2022631_33	663278.Ethha_0093	162.0	0	N/A	N/A
Pfam	UHGV-2022631_33	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-2022631_33	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-2022631_34	phrog_10	181.9	0	major head protein	head and packaging
UniRef90	UHGV-2022631_34	UniRef90_A0A367GHJ2	758.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-2022631_34	1120998.AUFC01000030_gene2236	526.0	0	Phage capsid family	N/A
Pfam	UHGV-2022631_34	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-2022631_34	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-2022631_34	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-2022631_34	PF05065,PF13620,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-2022631_35	phrog_541	61.1	1.8e-17	head-tail adaptor	connector
eggNOG-mapper	UHGV-2022631_35	663278.Ethha_0495	76.6	3.69e-16	N/A	N/A
eggNOG-mapper	UHGV-2022631_36	411471.SUBVAR_06991	57.4	0.00000000347	N/A	N/A
Pfam	UHGV-2022631_36	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-2022631_36	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-2022631_37	phrog_556	98.5	3.9e-29	minor head protein	head and packaging
UniRef90	UHGV-2022631_37	UniRef90_UPI001958E7C1	228.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-2022631_37	665956.HMPREF1032_03062	172.0	0	Minor capsid protein	N/A
Pfam	UHGV-2022631_37	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-2022631_37	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-2022631_38	phrog_3266	75.6	6.1e-22	tail completion	connector
eggNOG-mapper	UHGV-2022631_38	663278.Ethha_0492	60.1	0.00000000141	N/A	N/A
structural_annotation	UHGV-2022631_38	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-2022631_39	phrog_3099	67.5	2.4e-19	N/A	unknown function
eggNOG-mapper	UHGV-2022631_39	665956.HMPREF1032_03060	246.0	0	N/A	N/A
structural_annotation	UHGV-2022631_39	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-2022631_40	phrog_11299	86.5	1.4e-25	N/A	unknown function
eggNOG-mapper	UHGV-2022631_40	665956.HMPREF1032_03059	125.0	4.41e-35	N/A	N/A
structural_annotation	UHGV-2022631_40	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-2022631_41	phrog_706	96.4	2.9e-28	N/A	unknown function
UniRef90	UHGV-2022631_41	UniRef90_UPI0013141117	374.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-2022631_41	665956.HMPREF1032_03058	238.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-2022631_41	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-2022631_41	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-2022631_42	phrog_1535	83.8	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-2022631_42	411471.SUBVAR_06934	207.0	0	tape measure	N/A
COG	UHGV-2022631_42	COG5412	N/A	N/A	Phage-related protein	N/A
eggNOG-mapper	UHGV-2022631_45	476272.RUMHYD_00002	128.0	1.83e-27	N/A	N/A
KOfam	UHGV-2022631_47	K19304	118.7	6.1e-35	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-2022631_47	phrog_10030	98.8	2.1e-29	tail length tape measure protein	tail
UniRef90	UHGV-2022631_47	UniRef90_A0A3D1PRD1	399.0	0	Peptidase_M23 domain-containing protein	N/A
eggNOG-mapper	UHGV-2022631_47	670487.Ocepr_1144	105.0	3.51e-24	PFAM Peptidase family M23	N/A
Pfam	UHGV-2022631_47	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-2022631_47	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-2022631_47	PF01551,NF040883	N/A	N/A	N/A	N/A
PHROG	UHGV-2022631_48	phrog_1863	71.8	5.4e-21	N/A	unknown function
eggNOG-mapper	UHGV-2022631_48	665956.HMPREF1032_03922	108.0	3.81e-30	N/A	N/A
PHROG	UHGV-2022631_49	phrog_1129	60.9	1.7e-17	holin	lysis
UniRef90	UHGV-2022631_49	UniRef90_A0A367FT42	174.0	0	Enolase	N/A
eggNOG-mapper	UHGV-2022631_49	1007096.BAGW01000036_gene2663	117.0	4.06e-33	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-2022631_49	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-2022631_49	PF06946	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-2022631	Yes	35,401	58	92	1
UHGV-1311319	No	30,953	59	80	1
UHGV-1929206	No	13,180	58	35	1