vOTU vOTU-069100

vOTU: vOTU-069100

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-069100
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira → Lachnospira eligens_A
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00117 → vGENUS-00172 → vSUBGEN-31974 → vOTU-069100
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira → Lachnospira eligens_A
Host range breadth	Species
Lifestyle	temperate (Evidence: geNomad)

Representative genome
Genome ID	UHGV-0073156
Biosample ID	SAMEA2452121
Genome length (bp)	36,915 bps
CheckV completeness	97.19% (High-quality)
CDS count	49
CDS density	94.95%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira → Lachnospira eligens_A	Total connections	1545	Host agreement	73.53
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira → Lachnospira eligens_A	Total connections	313	Host agreement	91.69

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 97.19)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0073156_1	phrog_1281	132.6	1.9e-39	N/A	unknown function
UniRef90	UHGV-0073156_1	UniRef90_UPI00164A9B39	147.0	1.15047e-42	N/A	N/A
eggNOG-mapper	UHGV-0073156_1	1508644.SFBmNL_01513	144.0	3.29025e-42	N/A	N/A
Pfam	UHGV-0073156_1	PF13274	N/A	N/A	Antitoxin SocA-like, Panacea domain	SocA_Panacea
COG	UHGV-0073156_1	COG3600	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0073156_1	PF13274,COG3600	N/A	N/A	N/A	N/A
PHROG	UHGV-0073156_2	phrog_5763	85.9	5.6e-25	N/A	unknown function
eggNOG-mapper	UHGV-0073156_2	1033744.CAEL01000026_gene1411	108.0	3e-25	N/A	N/A
KOfam	UHGV-0073156_3	K06400	367.0	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0073156_3	phrog_95	359.2	0	integrase	integration and excision
UniRef90	UHGV-0073156_3	UniRef90_A0A413YU13	907.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0073156_3	411462.DORLON_00823	455.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0073156_3	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0073156_3	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0073156_3	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0073156_3	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0073156_3	PF00239,PF07508,PF13408,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-0073156_4	UniRef90_UPI0006C337A0	223.0	0	tetratricopeptide repeat protein	N/A
eggNOG-mapper	UHGV-0073156_4	2754.EH55_11435	169.0	8.40779e-45	cell adhesion	N/A
COG	UHGV-0073156_4	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0073156_5	phrog_20886	53.7	0.0000000000000028	N/A	unknown function
UniRef90	UHGV-0073156_5	UniRef90_UPI0013E038FD	53.1	0.000000137	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0073156_5	861450.HMPREF0080_02020	47.8	0.00000413	N/A	N/A
structural_annotation	UHGV-0073156_5	PF06114	N/A	N/A	N/A	N/A
KOfam	UHGV-0073156_6	K22299	64.2	3.3e-18	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0073156_6	phrog_8	75.8	8.8e-22	transcriptional regulator	transcription regulation
UniRef90	UHGV-0073156_6	UniRef90_A0A413YU20	253.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0073156_6	553973.CLOHYLEM_07297	89.4	2.29e-21	Transcriptional	N/A
PADLOC	UHGV-0073156_6	retron_type_VI_hth_cluster2_1	53.4	0.0000000000000054	N/A	Retron
Pfam	UHGV-0073156_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0073156_6	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0073156_6	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0073156_7	UniRef90_A0A413YU34	130.0	3.31e-38	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0073156_7	706433.HMPREF9430_01294	80.1	5.16e-19	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0073156_7	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0073156_7	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0073156_11	phrog_3584	246.6	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0073156_11	UniRef90_A0A4P8IFK4	346.0	0	N/A	N/A
eggNOG-mapper	UHGV-0073156_11	742741.HMPREF9475_00404	297.0	0	N/A	N/A
structural_annotation	UHGV-0073156_11	PF21578	N/A	N/A	N/A	N/A
KOfam	UHGV-0073156_12	K03469	61.7	1.7e-17	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0073156_12	phrog_531	59.7	5.7e-17	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0073156_12	UniRef90_A0A413YU26	276.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0073156_12	572480.Arnit_2361	73.6	0.0000000000000156	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-0073156_12	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0073156_12	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0073156_12	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0073156_13	PF19962,NF011863	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0073156_16	483218.BACPEC_01167	209.0	0	N/A	N/A
PHROG	UHGV-0073156_17	phrog_8470	286.0	0	N/A	unknown function
UniRef90	UHGV-0073156_17	UniRef90_UPI00164C094F	208.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0073156_17	483218.BACPEC_01166	387.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0073156_17	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0073156_17	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0073156_18	phrog_15077	100.7	3e-29	N/A	unknown function
UniRef90	UHGV-0073156_18	UniRef90_A0A3A6HZA9	219.0	0	N/A	N/A
eggNOG-mapper	UHGV-0073156_18	483218.BACPEC_01165	236.0	0	N/A	N/A
structural_annotation	UHGV-0073156_18	PF11300,NF038070	N/A	N/A	N/A	N/A
UniRef90	UHGV-0073156_21	UniRef90_UPI001D072F7E	66.6	0.000000000323	N/A	N/A
eggNOG-mapper	UHGV-0073156_21	1235790.C805_00035	59.7	0.00000000848	N/A	N/A
PHROG	UHGV-0073156_22	phrog_2118	124.6	8.7e-37	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0073156_22	UniRef90_R5ZJF1	275.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0073156_22	610130.Closa_0730	127.0	3.29e-36	HNH endonuclease	N/A
Pfam	UHGV-0073156_22	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0073156_22	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0073156_25	phrog_625	67.7	1.2e-19	N/A	unknown function
UniRef90	UHGV-0073156_25	UniRef90_A0A413YU40	215.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0073156_25	397290.C810_01502	130.0	2.28e-37	N/A	N/A
structural_annotation	UHGV-0073156_25	PF12961,COG2028	N/A	N/A	N/A	N/A
PHROG	UHGV-0073156_26	phrog_36	63.5	4.6e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0073156_26	UniRef90_UPI0009BB8B35	69.7	0.00000000000254	RNA polymerase subunit sigma-24	N/A
eggNOG-mapper	UHGV-0073156_26	397290.C810_01391	102.0	1.37e-25	N/A	N/A
structural_annotation	UHGV-0073156_26	PF02996	N/A	N/A	N/A	N/A
KOfam	UHGV-0073156_27	K07474	152.5	4.2039e-45	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0073156_27	phrog_51	161.0	0	terminase small subunit	head and packaging
UniRef90	UHGV-0073156_27	UniRef90_A0A413YU49	371.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0073156_27	1499683.CCFF01000014_gene3916	149.0	9.94922e-43	Terminase small subunit	N/A
Pfam	UHGV-0073156_27	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0073156_27	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0073156_27	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0073156_28	K06909	94.4	1.6e-27	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0073156_28	phrog_2	69.5	7.9e-20	terminase large subunit	head and packaging
UniRef90	UHGV-0073156_28	UniRef90_A0A413YU24	954.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0073156_28	1294142.CINTURNW_1023	518.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0073156_28	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0073156_28	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0073156_28	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0073156_29	phrog_533	284.6	0	portal protein	head and packaging
UniRef90	UHGV-0073156_29	UniRef90_A0A413YU90	941.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0073156_29	33035.JPJF01000093_gene2257	550.0	0	N/A	N/A
structural_annotation	UHGV-0073156_29	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0073156_30	phrog_581	242.8	0	minor head protein	head and packaging
UniRef90	UHGV-0073156_30	UniRef90_A0A413YU28	666.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0073156_30	33035.JPJF01000093_gene2255	432.0	0	N/A	N/A
Pfam	UHGV-0073156_30	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0073156_30	COG5585	N/A	N/A	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	N/A
structural_annotation	UHGV-0073156_30	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0073156_33	phrog_872	169.7	0	N/A	unknown function
UniRef90	UHGV-0073156_33	UniRef90_A0A413P9Z7	214.0	0	N/A	N/A
eggNOG-mapper	UHGV-0073156_33	573413.Spirs_2170	177.0	0	N/A	N/A
Pfam	UHGV-0073156_33	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0073156_33	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0073156_33	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-0073156_34	phrog_2303	139.1	3.39997e-41	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0073156_34	483218.BACPEC_01156	134.0	2.6e-36	N/A	N/A
PHROG	UHGV-0073156_35	phrog_422	260.0	0	major head protein	head and packaging
UniRef90	UHGV-0073156_35	UniRef90_A0A3D5M0U8	503.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0073156_35	663278.Ethha_1589	378.0	0	N/A	N/A
structural_annotation	UHGV-0073156_35	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0073156_36	phrog_541	68.4	1.1e-19	head-tail adaptor	connector
eggNOG-mapper	UHGV-0073156_36	1304866.K413DRAFT_0783	147.0	2.8026e-44	N/A	N/A
PHROG	UHGV-0073156_37	phrog_8710	125.6	1.9e-37	N/A	unknown function
eggNOG-mapper	UHGV-0073156_37	742740.HMPREF9474_03508	123.0	4.07e-35	N/A	N/A
structural_annotation	UHGV-0073156_37	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0073156_38	742740.HMPREF9474_03509	127.0	1.4e-35	N/A	N/A
PHROG	UHGV-0073156_39	phrog_2595	79.3	4.5e-23	head-tail connector protein	connector
UniRef90	UHGV-0073156_39	UniRef90_UPI001D068DAC	137.0	8.45e-39	minor capsid protein	N/A
eggNOG-mapper	UHGV-0073156_39	742740.HMPREF9474_03510	125.0	7.13e-35	N/A	N/A
Pfam	UHGV-0073156_39	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0073156_39	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0073156_40	phrog_820	117.7	7.6e-35	major tail protein	tail
UniRef90	UHGV-0073156_40	UniRef90_T3DDR1	171.0	0	Phage major tail 2 family protein	N/A
eggNOG-mapper	UHGV-0073156_40	1151292.QEW_2426	171.0	0	N/A	N/A
structural_annotation	UHGV-0073156_40	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0073156_41	phrog_8300	67.4	2.1e-19	N/A	unknown function
eggNOG-mapper	UHGV-0073156_41	1151292.QEW_2425	60.8	0.000000000154	N/A	N/A
structural_annotation	UHGV-0073156_41	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-0073156_42	phrog_8355	88.1	5.1e-26	N/A	unknown function
UniRef90	UHGV-0073156_42	UniRef90_UPI0006BBA9AA	110.0	1.75e-29	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0073156_42	1151292.QEW_2424	105.0	5.07e-29	N/A	N/A
PHROG	UHGV-0073156_43	phrog_1535	286.3	0	tail length tape measure protein	tail
UniRef90	UHGV-0073156_43	UniRef90_R6TDK7	355.0	0	Phage-related protein-like protein	N/A
eggNOG-mapper	UHGV-0073156_43	33035.JPJF01000093_gene2243	343.0	0	phage tail tape measure protein	N/A
COG	UHGV-0073156_43	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0073156_43	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0073156_44	phrog_1194	81.1	1.2e-23	N/A	unknown function
eggNOG-mapper	UHGV-0073156_44	33035.JPJF01000093_gene2242	153.0	0	N/A	N/A
structural_annotation	UHGV-0073156_44	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0073156_45	phrog_1401	64.4	1.8e-18	N/A	unknown function
UniRef90	UHGV-0073156_45	UniRef90_UPI00129D2DCF	65.1	0.000000000077	N/A	N/A
eggNOG-mapper	UHGV-0073156_45	1294142.CINTURNW_1705	55.8	0.0000000458	N/A	N/A
structural_annotation	UHGV-0073156_45	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-0073156_46	phrog_6616	159.6	0	tail protein	tail
UniRef90	UHGV-0073156_46	UniRef90_A0A356C4L7	765.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0073156_46	1294142.CINTURNW_1706	293.0	0	Phage minor structural protein	N/A
COG	UHGV-0073156_46	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0073156_46	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0073156_48	phrog_199	73.1	3.7e-21	holin	lysis
UniRef90	UHGV-0073156_48	UniRef90_A0A3B8UJ75	240.0	0	Holin	N/A
eggNOG-mapper	UHGV-0073156_48	483218.BACPEC_01140	218.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0073156_48	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0073156_48	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0073156_48	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0073156_48	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0073156_49	K02395	48.1	0.00000000000014	flgJ; peptidoglycan hydrolase FlgJ	N/A
PHROG	UHGV-0073156_49	phrog_3513	56.5	3.3e-16	endolysin	lysis
UniRef90	UHGV-0073156_49	UniRef90_R5ZWS5	466.0	0	Peptidoglycan hydrolase	N/A
eggNOG-mapper	UHGV-0073156_49	1423724.BAMM01000042_gene2173	59.7	0.000000153	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
Pfam	UHGV-0073156_49	PF01832	N/A	N/A	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
Pfam	UHGV-0073156_49	PF08230	N/A	N/A	CW_7 repeat	CW_7
COG	UHGV-0073156_49	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
structural_annotation	UHGV-0073156_49	PF08230,NF004974,COG1705	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0073156	Yes	36,915	38	97	1