vOTU vOTU-069287

vOTU: vOTU-069287

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-069287
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00124 → vGENUS-00131 → vSUBGEN-15269 → vOTU-069287
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0091243
Biosample ID	SAMEA3360679
Genome length (bp)	40,267 bps
CheckV completeness	98.98% (High-quality)
CDS count	60
CDS density	90.62%
tRNA count	2
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	274	Host agreement	98.18
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 98.98)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0091243_1	phrog_16490	62.3	1e-17	N/A	unknown function
eggNOG-mapper	UHGV-0091243_1	1226322.HMPREF1545_00076	100.0	6.58e-25	N/A	N/A
eggNOG-mapper	UHGV-0091243_2	658655.HMPREF0988_00916	119.0	6.06e-33	N/A	N/A
eggNOG-mapper	UHGV-0091243_3	1408437.JNJN01000043_gene801	94.7	2.44e-21	N/A	N/A
KOfam	UHGV-0091243_4	K14059	180.7	0	int; integrase	N/A
PHROG	UHGV-0091243_4	phrog_1	165.4	0	integrase	integration and excision
UniRef90	UHGV-0091243_4	UniRef90_A0A367GI93	224.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0091243_4	1507.HMPREF0262_00307	160.0	6.93643e-43	Phage integrase family	N/A
Pfam	UHGV-0091243_4	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0091243_4	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0091243_4	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0091243_5	phrog_1373	43.0	0.0000000000033	transcriptional regulator	transcription regulation
UniRef90	UHGV-0091243_5	UniRef90_A0A2A7AM70	182.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0091243_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0091243_5	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0091243_5	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0091243_8	K02342	81.7	9.3e-24	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-0091243_8	phrog_192	91.6	8.4e-27	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0091243_8	UniRef90_A0A3C0J9N6	79.3	0.000000000000841	Exonuclease domain-containing protein	N/A
eggNOG-mapper	UHGV-0091243_8	665956.HMPREF1032_02791	124.0	1.48e-28	N/A	N/A
PADLOC	UHGV-0091243_8	cd06127	74.8	2.5e-21	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-0091243_8	PF00929	N/A	N/A	Exonuclease	RNase_T
Pfam	UHGV-0091243_8	PF00533	N/A	N/A	BRCA1 C Terminus (BRCT) domain	BRCT
COG	UHGV-0091243_8	COG0272	N/A	N/A	NAD-dependent DNA ligase	N/A
structural_annotation	UHGV-0091243_8	PF13361,PF00533,MF_00157,NF008746,COG2925	N/A	N/A	N/A	N/A
UniRef90	UHGV-0091243_11	UniRef90_A0A2A7AM72	111.0	1.32e-29	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0091243_11	1378168.N510_01712	75.9	0.00000000000000312	N/A	N/A
structural_annotation	UHGV-0091243_11	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0091243_12	UniRef90_UPI000BEF0F65	70.9	0.00000000000000636	helix-turn-helix transcriptional regulator	N/A
structural_annotation	UHGV-0091243_12	PF21291,TIGR03070,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0091243_18	PF10346,MF_00337,NF010671	N/A	N/A	N/A	N/A
PHROG	UHGV-0091243_21	phrog_14970	44.5	0.0000000000031	N/A	unknown function
COG	UHGV-0091243_21	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0091243_21	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0091243_22	phrog_72	44.1	0.0000000000039	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0091243_22	411471.SUBVAR_05829	137.0	1.47e-38	N/A	N/A
structural_annotation	UHGV-0091243_22	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0091243_23	phrog_7566	83.9	1.4e-24	N/A	unknown function
eggNOG-mapper	UHGV-0091243_23	411471.SUBVAR_05830	105.0	2.74e-28	N/A	N/A
KOfam	UHGV-0091243_24	K03111	148.8	5.74532e-44	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0091243_24	phrog_44	150.8	7.00649e-45	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0091243_24	UniRef90_A0A2A7ALU9	209.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0091243_24	748224.HMPREF9436_00638	209.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0091243_24	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0091243_24	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0091243_24	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0091243_24	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0091243_24	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0091243_25	phrog_6969	59.7	4e-17	N/A	unknown function
eggNOG-mapper	UHGV-0091243_25	748224.HMPREF9436_00735	160.0	8.40779e-45	N/A	N/A
Pfam	UHGV-0091243_25	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
Pfam	UHGV-0091243_25	PF19481	N/A	N/A	N/A	DUF6017
COG	UHGV-0091243_25	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0091243_25	PF19481,PF01978,MF_01819,TIGR01610,COG5625	N/A	N/A	N/A	N/A
KOfam	UHGV-0091243_26	K03496	205.3	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0091243_26	phrog_164	154.1	1.4013e-45	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0091243_26	UniRef90_A0A2A7B6H3	360.0	0	AAA_31 domain-containing protein	N/A
eggNOG-mapper	UHGV-0091243_26	411471.SUBVAR_05839	228.0	0	AAA domain	N/A
Pfam	UHGV-0091243_26	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0091243_26	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0091243_26	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
UniRef90	UHGV-0091243_27	UniRef90_A0A845R8R0	103.0	1.16e-25	N/A	N/A
KOfam	UHGV-0091243_28	K03497	90.8	2.7e-26	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0091243_28	phrog_4715	113.5	1.3e-33	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0091243_28	UniRef90_A0A2A7B6Q0	308.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0091243_28	411471.SUBVAR_05842	178.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0091243_28	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0091243_28	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0091243_28	PF02195,MF_02015,TIGR03764,COG1475	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0091243_29	PF04545	N/A	N/A	N/A	N/A
KOfam	UHGV-0091243_35	K03427	147.5	1.09301e-43	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-0091243_35	phrog_6380	346.9	0	DNA methyltransferase	other
UniRef90	UHGV-0091243_35	UniRef90_UPI0011DC86C4	568.0	0	N-6 DNA methylase	N/A
eggNOG-mapper	UHGV-0091243_35	1444306.JFZC01000034_gene2643	354.0	0	type I restriction-modification system	N/A
PADLOC	UHGV-0091243_35	MTase_I_00005	93.0	3.6e-27	Type I methyltransferase	RM
Pfam	UHGV-0091243_35	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-0091243_35	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0091243_35	PF02384,MF_01872,TIGR00497,COG0286	N/A	N/A	N/A	N/A
PHROG	UHGV-0091243_36	phrog_119	56.2	5.3e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0091243_36	UniRef90_A0A2A7B6I3	222.0	0	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0091243_36	768710.DesyoDRAFT_1275	104.0	1.64e-27	HNH nucleases	N/A
Pfam	UHGV-0091243_36	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0091243_36	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0091243_37	phrog_13845	56.5	4.1e-16	N/A	unknown function
eggNOG-mapper	UHGV-0091243_37	1399942.U3PDR2_9CAUD	67.0	0.00000000000113	N/A	N/A
structural_annotation	UHGV-0091243_37	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0091243_38	phrog_9	229.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0091243_38	UniRef90_A0A2A7ALT4	1046.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0091243_38	1235792.C808_00083	628.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0091243_38	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0091243_38	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0091243_38	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0091243_39	phrog_12	129.3	2.9e-38	portal protein	head and packaging
UniRef90	UHGV-0091243_39	UniRef90_A0A2A7B6S8	556.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0091243_39	349161.Dred_2606	264.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0091243_39	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0091243_39	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0091243_39	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0091243_39	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0091243_40	K01358	73.5	4e-21	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0091243_40	phrog_94	127.7	1.4e-37	head maturation protease	head and packaging
UniRef90	UHGV-0091243_40	UniRef90_UPI00111E41DA	137.0	3.02e-36	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0091243_40	1232452.BAIB02000007_gene1626	128.0	1.74e-33	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0091243_40	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0091243_40	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0091243_40	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0091243_41	phrog_10	130.4	1.3e-38	major head protein	head and packaging
UniRef90	UHGV-0091243_41	UniRef90_A0A2A7B712	723.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0091243_41	1235792.C808_00086	448.0	0	Phage capsid family	N/A
Pfam	UHGV-0091243_41	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0091243_41	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0091243_41	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0091243_41	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0091243_41	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0091243_42	phrog_749	59.5	5.6e-17	N/A	unknown function
eggNOG-mapper	UHGV-0091243_42	1211817.CCAT010000053_gene2133	64.3	0.00000000000559	N/A	N/A
PHROG	UHGV-0091243_43	phrog_19734	93.9	1.6e-27	N/A	unknown function
UniRef90	UHGV-0091243_43	UniRef90_A0A0D8I708	80.1	9.41e-17	Phage head-tail joining protein	N/A
eggNOG-mapper	UHGV-0091243_43	349161.Dred_2602	74.3	0.00000000000000275	N/A	N/A
structural_annotation	UHGV-0091243_43	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0091243_44	999413.HMPREF1094_02005	70.1	0.0000000000000354	N/A	N/A
structural_annotation	UHGV-0091243_44	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0091243_45	phrog_5	49.3	0.00000000000009	tail completion or Neck1 protein	connector
UniRef90	UHGV-0091243_45	UniRef90_A0A1C6FG30	130.0	2.08e-35	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0091243_45	908340.HMPREF9406_2573	110.0	2.84e-28	N/A	N/A
structural_annotation	UHGV-0091243_45	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0091243_46	phrog_88	96.3	3.3e-28	major tail protein	tail
UniRef90	UHGV-0091243_46	UniRef90_G9YSC5	110.0	8.09e-27	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0091243_46	33035.JPJF01000039_gene278	70.9	0.00000000000203	N/A	N/A
NCBIFam	UHGV-0091243_46	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0091243_46	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0091243_49	phrog_9959	95.4	3.7e-28	tail length tape measure protein	tail
UniRef90	UHGV-0091243_49	UniRef90_A0A2A7ALS3	719.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0091243_49	1224164.B843_03450	172.0	4.21006e-41	Tail protein	N/A
Pfam	UHGV-0091243_49	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0091243_49	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0091243_49	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0091243_49	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0091243_50	phrog_33	79.4	8.5e-23	distal tail protein Dit	tail
UniRef90	UHGV-0091243_50	UniRef90_A0A173Z1X4	143.0	9.76e-39	Phage-related protein	N/A
eggNOG-mapper	UHGV-0091243_50	908340.HMPREF9406_2569	90.1	4.93e-19	phage tail	N/A
NCBIFam	UHGV-0091243_50	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0091243_50	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0091243_50	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0091243_51	phrog_1067	172.1	0	minor head protein	head and packaging
UniRef90	UHGV-0091243_51	UniRef90_A0A2A7AM44	706.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0091243_51	1123263.AUKY01000068_gene489	191.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0091243_51	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0091243_51	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0091243_51	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0091243_51	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
KOfam	UHGV-0091243_54	K07273	178.8	0	acm; lysozyme	N/A
PHROG	UHGV-0091243_54	phrog_291	145.8	3.79752e-43	endolysin	lysis
UniRef90	UHGV-0091243_54	UniRef90_UPI001D0EE7D8	303.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-0091243_54	748224.HMPREF9436_00154	289.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0091243_54	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0091243_54	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0091243_54	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0091243_55	phrog_1863	77.2	1.2e-22	N/A	unknown function
eggNOG-mapper	UHGV-0091243_55	718252.FP2_04900	145.0	1.82169e-44	N/A	N/A
PHROG	UHGV-0091243_56	phrog_15303	83.7	1.8e-24	N/A	unknown function
eggNOG-mapper	UHGV-0091243_58	1384065.JAGS01000001_gene3265	47.8	0.00000714	sequence-specific DNA binding	N/A
COG	UHGV-0091243_58	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0091243_58	PF13560,NF040522	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0091243	Yes	40,267	52	99	1