vOTU vOTU-069501

vOTU: vOTU-069501

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-069501
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00221 → vGENUS-07718 → vSUBGEN-06351 → vOTU-069501
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae
Host range breadth	Family
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-1382728
Biosample ID	N/A
Genome length (bp)	39,548 bps
CheckV completeness	99.90% (High-quality)
CDS count	56
CDS density	94.25%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae	Total connections	26	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1382728_1	K06400	270.1	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1382728_1	phrog_95	307.9	0	integrase	integration and excision
UniRef90	UHGV-1382728_1	UniRef90_UPI001E3451E3	902.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-1382728_1	1235792.C808_00650	643.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1382728_1	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1382728_1	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1382728_1	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1382728_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1382728_1	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-1382728_2	phrog_2700	67.5	2.4e-19	N/A	unknown function
UniRef90	UHGV-1382728_2	UniRef90_UPI000CDA5767	315.0	0	SHOCT domain-containing protein	N/A
eggNOG-mapper	UHGV-1382728_2	410358.Mlab_1036	60.1	0.00000000718	Short C-terminal domain	N/A
Pfam	UHGV-1382728_2	PF14472	N/A	N/A	N/A	DUF4429
Pfam	UHGV-1382728_2	PF09851	N/A	N/A	Short C-terminal domain	SHOCT
structural_annotation	UHGV-1382728_2	PF08000,COG3402	N/A	N/A	N/A	N/A
KOfam	UHGV-1382728_3	K22300	56.3	7.2e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1382728_3	phrog_8	57.8	2.7e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-1382728_3	UniRef90_UPI000CDA9A02	200.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1382728_3	478749.BRYFOR_07570	102.0	1.4e-25	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-1382728_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1382728_3	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1382728_3	PF01381,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-1382728_4	UniRef90_A0A3S5FBF3	114.0	1.26e-31	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1382728_4	478749.BRYFOR_07571	101.0	2.32e-27	N/A	N/A
structural_annotation	UHGV-1382728_4	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1382728_11	phrog_3584	168.4	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1382728_11	1280698.AUJS01000007_gene1013	368.0	0	N/A	N/A
structural_annotation	UHGV-1382728_11	PF01446	N/A	N/A	N/A	N/A
KOfam	UHGV-1382728_12	K03469	45.2	0.0000000000017	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-1382728_12	phrog_531	55.1	0.0000000000000015	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1382728_12	UniRef90_A0A1C6E4D9	261.0	0	Ribonuclease H	N/A
eggNOG-mapper	UHGV-1382728_12	411461.DORFOR_01140	134.0	1.88e-38	RNA-DNA hybrid ribonuclease activity	N/A
Pfam	UHGV-1382728_12	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-1382728_12	COG0328	N/A	N/A	Ribonuclease HI	N/A
eggNOG-mapper	UHGV-1382728_13	1235792.C808_00065	246.0	0	N/A	N/A
PHROG	UHGV-1382728_14	phrog_8470	241.4	0	N/A	unknown function
UniRef90	UHGV-1382728_14	UniRef90_UPI001E5C1444	1276.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-1382728_14	999413.HMPREF1094_04705	578.0	0	PcfJ-like protein	N/A
Pfam	UHGV-1382728_14	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-1382728_14	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-1382728_16	phrog_15077	113.1	4.8e-33	N/A	unknown function
UniRef90	UHGV-1382728_16	UniRef90_UPI001D0741A0	200.0	0	N/A	N/A
eggNOG-mapper	UHGV-1382728_16	1235792.C808_00069	353.0	0	N/A	N/A
structural_annotation	UHGV-1382728_16	PF11300,NF033725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1382728_20	1235798.C817_01884	105.0	6.64e-29	N/A	N/A
KOfam	UHGV-1382728_22	K03111	129.3	4.8e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1382728_22	phrog_44	135.9	2.8e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1382728_22	UniRef90_UPI001E432FEE	266.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1382728_22	471875.RUMLAC_01617	215.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1382728_22	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1382728_22	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1382728_22	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1382728_22	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1382728_22	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1382728_24	phrog_7566	107.3	5.2e-32	N/A	unknown function
eggNOG-mapper	UHGV-1382728_24	411459.RUMOBE_00948	136.0	2.99e-39	N/A	N/A
PHROG	UHGV-1382728_26	phrog_11237	71.4	1.4e-20	N/A	unknown function
eggNOG-mapper	UHGV-1382728_26	1235798.C817_02584	120.0	2.45e-33	N/A	N/A
PHROG	UHGV-1382728_27	phrog_119	77.7	1.5e-22	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1382728_27	UniRef90_UPI001E29C5AC	249.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1382728_27	1235792.C808_00081	213.0	0	HNH nucleases	N/A
Pfam	UHGV-1382728_27	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1382728_27	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1382728_30	phrog_5110	99.9	1.5e-29	terminase small subunit	head and packaging
UniRef90	UHGV-1382728_30	UniRef90_A0A1M6MVK9	179.0	0	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-1382728_30	1235792.C808_00082	171.0	0	N/A	N/A
Pfam	UHGV-1382728_30	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-1382728_30	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1382728_31	phrog_9	250.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-1382728_31	UniRef90_UPI001E558347	1170.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-1382728_31	1235792.C808_00083	1013.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-1382728_31	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1382728_31	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1382728_31	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1382728_31	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1382728_32	phrog_12	117.0	1.4e-34	portal protein	head and packaging
UniRef90	UHGV-1382728_32	UniRef90_UPI001E28AA12	788.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1382728_32	1235792.C808_00084	609.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-1382728_32	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1382728_32	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1382728_32	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1382728_32	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1382728_33	K01358	107.2	2.1e-31	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1382728_33	phrog_94	202.2	0	head maturation protease	head and packaging
UniRef90	UHGV-1382728_33	UniRef90_UPI001E5033E0	407.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-1382728_33	1235792.C808_00085	310.0	0	Clp protease	N/A
Pfam	UHGV-1382728_33	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1382728_33	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1382728_33	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1382728_34	phrog_10	133.0	3.5e-39	major head protein	head and packaging
UniRef90	UHGV-1382728_34	UniRef90_UPI001E2BCFCB	904.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-1382728_34	1235792.C808_00086	757.0	0	Phage capsid family	N/A
Pfam	UHGV-1382728_34	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-1382728_34	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-1382728_34	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1382728_34	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1382728_34	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1382728_35	phrog_749	66.6	3.4e-19	N/A	unknown function
eggNOG-mapper	UHGV-1382728_35	1235792.C808_00087	173.0	0	N/A	N/A
eggNOG-mapper	UHGV-1382728_36	1235792.C808_00088	174.0	0	N/A	N/A
structural_annotation	UHGV-1382728_36	PF20536,TIGR01563	N/A	N/A	N/A	N/A
UniRef90	UHGV-1382728_37	UniRef90_UPI001E4E7E25	228.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1382728_37	1235792.C808_00089	215.0	0	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-1382728_37	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1382728_37	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1382728_38	phrog_78	40.3	0.000000000053	tail terminator	connector
eggNOG-mapper	UHGV-1382728_38	1235792.C808_00090	179.0	0	N/A	N/A
structural_annotation	UHGV-1382728_38	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-1382728_39	phrog_88	171.6	0	major tail protein	tail
UniRef90	UHGV-1382728_39	UniRef90_UPI001E4297AF	440.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1382728_39	1235792.C808_00091	308.0	0	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-1382728_39	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1382728_39	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1382728_40	phrog_709	114.6	5.5e-34	N/A	unknown function
eggNOG-mapper	UHGV-1382728_40	1235792.C808_00092	206.0	0	N/A	N/A
structural_annotation	UHGV-1382728_40	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-1382728_41	phrog_3033	69.4	3.9e-20	N/A	unknown function
UniRef90	UHGV-1382728_41	UniRef90_A0A2X2UJ60	77.4	7.76e-18	Phage-like protein	N/A
eggNOG-mapper	UHGV-1382728_41	908340.HMPREF9406_0174	78.6	4.54e-19	N/A	N/A
PHROG	UHGV-1382728_42	phrog_5755	341.0	0	tail length tape measure protein	tail
UniRef90	UHGV-1382728_42	UniRef90_UPI001E49D9C1	1438.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-1382728_42	1235792.C808_00093	927.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-1382728_42	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-1382728_42	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-1382728_42	TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1382728_43	phrog_33	51.2	0.000000000000026	distal tail protein Dit	tail
UniRef90	UHGV-1382728_43	UniRef90_UPI00148B3121	477.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-1382728_43	1235792.C808_00094	378.0	0	phage tail	N/A
Pfam	UHGV-1382728_43	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
COG	UHGV-1382728_43	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1382728_43	PF05709,PF02408,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1382728_44	phrog_9886	782.4	0	N/A	unknown function
UniRef90	UHGV-1382728_44	UniRef90_UPI001E61F555	1931.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1382728_44	1235792.C808_00095	766.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-1382728_44	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1382728_44	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1382728_44	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1382728_44	PF06605,PF15425,PF03944,PF21683,MF_00813,TIGR01665,NF033675,NF038128,COG4926	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1382728_47	1123075.AUDP01000020_gene1527	62.8	0.0000000218	N/A	N/A
PHROG	UHGV-1382728_48	phrog_17147	314.1	0	N/A	unknown function
eggNOG-mapper	UHGV-1382728_48	657322.FPR_27150	595.0	0	N/A	N/A
PHROG	UHGV-1382728_49	phrog_1423	131.7	6.2e-39	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1382728_49	UniRef90_UPI001E2E8FBA	830.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
eggNOG-mapper	UHGV-1382728_49	657322.FPR_27160	423.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
COG	UHGV-1382728_49	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-1382728_49	PF00078,MF_04065,TIGR04416,COG3344	N/A	N/A	N/A	N/A
PHROG	UHGV-1382728_50	phrog_1348	46.4	0.00000000000072	tail fiber protein	tail
UniRef90	UHGV-1382728_50	UniRef90_UPI001C0F60E0	285.0	0	acyl carrier protein	N/A
eggNOG-mapper	UHGV-1382728_50	411902.CLOBOL_05646	137.0	4.85e-37	N/A	N/A
structural_annotation	UHGV-1382728_50	PF14301	N/A	N/A	N/A	N/A
PHROG	UHGV-1382728_51	phrog_20274	153.8	0	N/A	unknown function
UniRef90	UHGV-1382728_51	UniRef90_UPI001E5F1113	302.0	0	putative ABC transporter permease	N/A
eggNOG-mapper	UHGV-1382728_51	642492.Clole_2737	173.0	0	N/A	N/A
Pfam	UHGV-1382728_51	PF06541	N/A	N/A	Putative ABC-transporter type IV	ABC_trans_CmpB
COG	UHGV-1382728_51	COG4905	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1382728_51	PF06541,COG4905	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1382728_52	457412.RSAG_04673	75.5	1.26e-17	N/A	N/A
eggNOG-mapper	UHGV-1382728_53	537007.BLAHAN_05249	74.7	0.0000000000000598	N/A	N/A
eggNOG-mapper	UHGV-1382728_54	1321784.HMPREF1987_01091	77.8	5.41e-18	N/A	N/A
PHROG	UHGV-1382728_56	phrog_297	104.1	1.2e-31	holin	lysis
UniRef90	UHGV-1382728_56	UniRef90_R6K4G9	531.0	0	Glycosyl hydrolase family 25	N/A
eggNOG-mapper	UHGV-1382728_56	411470.RUMGNA_00255	363.0	0	COG COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	N/A
Pfam	UHGV-1382728_56	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-1382728_56	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-1382728_56	PF08230,PF19087	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1382728	Yes	39,548	51	100	1
UHGV-1420854	No	21,615	52	56	1