vOTU vOTU-069552

vOTU: vOTU-069552

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-069552
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_C → Negativicutes → Acidaminococcales → Acidaminococcaceae → Phascolarctobacterium_A → Phascolarctobacterium_A succinatutens
Taxonomy (UHGV)	vFAM-00008 → vSUBFAM-00325 → vGENUS-00319 → vSUBGEN-00556 → vOTU-069552
Host lineage	Bacteria → Firmicutes_C → Negativicutes → Acidaminococcales → Acidaminococcaceae → Phascolarctobacterium_A
Host range breadth	Genus
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-1527673
Biosample ID	SAMEA3664687
Genome length (bp)	40,792 bps
CheckV completeness	99.96% (High-quality)
CDS count	45
CDS density	95.02%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_C → Negativicutes → Acidaminococcales → Acidaminococcaceae → Phascolarctobacterium_A	Total connections	244	Host agreement	97.13
PHIST-predicted host lineage	Bacteria → Firmicutes_C → Negativicutes → Acidaminococcales → Acidaminococcaceae → Phascolarctobacterium_A → Phascolarctobacterium_A succinatutens	Total connections	91	Host agreement	75.82

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.96)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1527673_1	K06400	382.1	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1527673_1	phrog_95	365.9	0	integrase	integration and excision
UniRef90	UHGV-1527673_1	UniRef90_E8LBZ4	413.0	0	Resolvase, N-terminal domain protein	N/A
eggNOG-mapper	UHGV-1527673_1	626939.HMPREF9443_00357	413.0	0	overlaps another CDS with the same product name	N/A
Pfam	UHGV-1527673_1	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1527673_1	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1527673_1	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1527673_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1527673_1	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-1527673_2	UniRef90_A0A7M1RS47	89.7	5.87e-20	RNA polymerase sigma factor/ubiquitin-like protein	N/A
structural_annotation	UHGV-1527673_3	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1527673_9	phrog_774	64.7	1.7e-18	N/A	unknown function
eggNOG-mapper	UHGV-1527673_9	397290.C810_05225	79.7	3.55e-18	N/A	N/A
eggNOG-mapper	UHGV-1527673_10	1392502.JNIO01000008_gene1280	235.0	0	N/A	N/A
structural_annotation	UHGV-1527673_10	PF21277	N/A	N/A	N/A	N/A
PHROG	UHGV-1527673_11	phrog_918	101.1	5.4e-30	N/A	unknown function
UniRef90	UHGV-1527673_11	UniRef90_UPI000EC62F11	154.0	0	N/A	N/A
eggNOG-mapper	UHGV-1527673_11	537007.BLAHAN_05515	140.0	1.10002e-42	N/A	N/A
Pfam	UHGV-1527673_11	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-1527673_11	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-1527673_13	phrog_4105	82.1	5e-24	N/A	unknown function
eggNOG-mapper	UHGV-1527673_13	537013.CLOSTMETH_01753	78.6	1.64e-17	N/A	N/A
PHROG	UHGV-1527673_14	phrog_1640	80.1	4.1e-23	tail protein	tail
eggNOG-mapper	UHGV-1527673_14	215158.FIBER_BPE15	67.0	0.0000000272	outer membrane	N/A
PHROG	UHGV-1527673_15	phrog_9880	392.9	0	N/A	unknown function
eggNOG-mapper	UHGV-1527673_15	568816.Acin_1824	495.0	0	N/A	N/A
Pfam	UHGV-1527673_15	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
Pfam	UHGV-1527673_15	PF18838	N/A	N/A	Large polyvalent protein associated domain 23	LPD23
UniRef90	UHGV-1527673_16	UniRef90_A0A1B3X2T2	178.0	9.24857e-44	NlpC/P60 domain-containing protein	N/A
structural_annotation	UHGV-1527673_16	PF01464,COG0741	N/A	N/A	N/A	N/A
PHROG	UHGV-1527673_17	phrog_418	54.3	0.0000000000000022	internal virion protein	head and packaging
structural_annotation	UHGV-1527673_17	TIGR02971	N/A	N/A	N/A	N/A
PHROG	UHGV-1527673_18	phrog_308	84.2	1.6e-24	internal virion protein	head and packaging
UniRef90	UHGV-1527673_18	UniRef90_A0A3A5L1J5	70.9	0.00000000000169	N/A	N/A
eggNOG-mapper	UHGV-1527673_18	585503.HMPREF7545_1741	110.0	1.14e-28	N/A	N/A
structural_annotation	UHGV-1527673_18	PF11039,MF_02210,NF011709,COG1247	N/A	N/A	N/A	N/A
PHROG	UHGV-1527673_19	phrog_376	512.0	0	tail protein	tail
UniRef90	UHGV-1527673_19	UniRef90_A0A0U1KV93	414.0	0	N/A	N/A
eggNOG-mapper	UHGV-1527673_19	585503.HMPREF7545_1740	645.0	0	N/A	N/A
structural_annotation	UHGV-1527673_19	PF11134,MF_00923,TIGR03300,COG2706	N/A	N/A	N/A	N/A
PHROG	UHGV-1527673_20	phrog_394	171.9	0	tail protein	tail
UniRef90	UHGV-1527673_20	UniRef90_A0A8B2QU77	228.0	0	Tail tube protein	N/A
eggNOG-mapper	UHGV-1527673_20	585503.HMPREF7545_1739	178.0	0	N/A	N/A
structural_annotation	UHGV-1527673_20	PF17212	N/A	N/A	N/A	N/A
Pfam	UHGV-1527673_21	PF07498	N/A	N/A	Rho termination factor, N-terminal domain	Rho_N
structural_annotation	UHGV-1527673_21	PF12949	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1527673_22	585503.HMPREF7545_1737	114.0	6.04e-31	N/A	N/A
structural_annotation	UHGV-1527673_22	PF21190,NF033675	N/A	N/A	N/A	N/A
PHROG	UHGV-1527673_23	phrog_212	103.3	0	major head protein	head and packaging
UniRef90	UHGV-1527673_23	UniRef90_A0A0U1KVA9	300.0	0	N/A	N/A
eggNOG-mapper	UHGV-1527673_23	585503.HMPREF7545_1736	387.0	0	N/A	N/A
Pfam	UHGV-1527673_23	PF20911	N/A	N/A	Major capsid protein GP7	GP7
structural_annotation	UHGV-1527673_23	PF20911,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1527673_24	phrog_458	94.4	1.5e-27	protease	other
UniRef90	UHGV-1527673_24	UniRef90_A0A6J5NV41	75.9	0.000000000000319	Putative protease	N/A
eggNOG-mapper	UHGV-1527673_24	585503.HMPREF7545_1735	152.0	1.48538e-43	N/A	N/A
PHROG	UHGV-1527673_26	phrog_332	420.2	0	head-tail adaptor	connector
UniRef90	UHGV-1527673_26	UniRef90_A0A8B2QMC7	677.0	0	Head-to-tail connecting protein	N/A
eggNOG-mapper	UHGV-1527673_26	585503.HMPREF7545_1733	566.0	0	Bacteriophage head to tail connecting protein	N/A
Pfam	UHGV-1527673_26	PF12236	N/A	N/A	Bacteriophage head to tail connecting protein	Head-tail_con
structural_annotation	UHGV-1527673_26	PF12236,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1527673_28	K06909	57.9	1.7e-16	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1527673_28	phrog_5902	253.3	0	N/A	unknown function
UniRef90	UHGV-1527673_28	UniRef90_UPI0018C4A0E6	568.0	0	terminase	N/A
eggNOG-mapper	UHGV-1527673_28	1200557.JHWV01000001_gene277	569.0	0	Terminase RNaseH-like domain	N/A
COG	UHGV-1527673_28	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-1527673_28	PF03237,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-1527673_29	K07474	87.5	3.5e-25	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1527673_29	phrog_51	79.3	4.4e-23	terminase small subunit	head and packaging
UniRef90	UHGV-1527673_29	UniRef90_A0A8B2QP55	95.9	1.28e-22	Phage terminase small subunit	N/A
eggNOG-mapper	UHGV-1527673_29	1160721.RBI_II00483	69.7	0.000000000000436	DNA packaging	N/A
Pfam	UHGV-1527673_29	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1527673_29	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1527673_29	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-1527673_31	phrog_3584	204.5	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1527673_31	642492.Clole_0725	163.0	0	N/A	N/A
structural_annotation	UHGV-1527673_31	PF21578	N/A	N/A	N/A	N/A
PHROG	UHGV-1527673_34	phrog_1672	47.1	0.0000000000003	N/A	unknown function
KOfam	UHGV-1527673_36	K00558	268.4	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1527673_36	phrog_116	304.1	0	DNA methyltransferase	other
UniRef90	UHGV-1527673_36	UniRef90_R6WTQ1	793.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1527673_36	203119.Cthe_1728	384.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-1527673_36	MTase_II_00058	281.3	0	Type II methyltransferase	RM
Pfam	UHGV-1527673_36	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-1527673_36	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-1527673_36	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1527673_36	PF00145,MF_00786,TIGR00675,COG0270	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1527673_38	MF_02014,NF010723	N/A	N/A	N/A	N/A
Pfam	UHGV-1527673_39	PF12957	N/A	N/A	N/A	DUF3846
structural_annotation	UHGV-1527673_39	PF12957	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1527673_44	PF13033	N/A	N/A	N/A	N/A
KOfam	UHGV-1527673_45	K22300	62.3	1.2e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1527673_45	phrog_8	55.1	0.0000000000000015	transcriptional regulator	transcription regulation
UniRef90	UHGV-1527673_45	UniRef90_R6X1Y8	127.0	1.15e-35	Helix-turn-helix domain protein	N/A
eggNOG-mapper	UHGV-1527673_45	642492.Clole_0718	81.6	2.96e-18	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-1527673_45	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1527673_45	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1527673_45	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1527673	Yes	40,792	46	100	1