vOTU vOTU-069645

vOTU: vOTU-069645

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-069645
Number of genomes	5
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00060 → vGENUS-00089 → vSUBGEN-30340 → vOTU-069645
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170 → CAG-170 sp000432135
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1391402
Biosample ID	SAMEA2147587
Genome length (bp)	42,222 bps
CheckV completeness	99.90% (High-quality)
CDS count	57
CDS density	92.33%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170 → CAG-170 sp000432135	Total connections	192	Host agreement	88.54
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170	Total connections	19	Host agreement	94.74

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1391402_1	phrog_190	58.0	1.8e-16	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1391402_1	UniRef90_A0A4D7AZG9	82.4	8.85e-19	N/A	N/A
eggNOG-mapper	UHGV-1391402_1	1226322.HMPREF1545_00295	77.8	3.82e-17	N/A	N/A
Pfam	UHGV-1391402_1	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1391402_1	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-1391402_2	phrog_374	55.8	0.000000000000001	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1391402_2	1423807.BACO01000037_gene1103	68.2	0.00000000000166	N/A	N/A
PHROG	UHGV-1391402_4	phrog_2245	89.7	3.1e-26	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-1391402_4	UniRef90_A0A4U9RLZ8	60.8	0.000000000684	N/A	N/A
eggNOG-mapper	UHGV-1391402_4	1226322.HMPREF1545_00289	59.3	0.00000000434	N/A	N/A
KOfam	UHGV-1391402_8	K00571	98.8	5.8e-29	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1391402_8	phrog_23224	178.5	0	DNA methyltransferase	other
UniRef90	UHGV-1391402_8	UniRef90_UPI001D0839DE	357.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-1391402_8	718252.FP2_06750	357.0	0	DNA methylase	N/A
PADLOC	UHGV-1391402_8	MTase_II_00172	92.1	1.3e-28	Type II methyltransferase	RM
Pfam	UHGV-1391402_8	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1391402_8	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1391402_8	PF01555,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-1391402_9	phrog_3584	114.0	1.3e-33	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1391402_9	537013.CLOSTMETH_02141	73.6	0.00000000000035	N/A	N/A
structural_annotation	UHGV-1391402_9	PF21578,MF_00360	N/A	N/A	N/A	N/A
PHROG	UHGV-1391402_10	phrog_606	72.7	6.2e-21	terminase small subunit	head and packaging
UniRef90	UHGV-1391402_10	UniRef90_UPI001F487344	128.0	2.41e-35	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1391402_10	397290.C810_05185	129.0	4.94e-36	DNA-packaging protein gp3	N/A
Pfam	UHGV-1391402_10	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-1391402_10	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-1391402_11	K06909	139.9	2.70002e-41	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1391402_11	phrog_979	135.0	1.10002e-41	terminase large subunit	head and packaging
UniRef90	UHGV-1391402_11	UniRef90_A0A810Q5R0	640.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1391402_11	1410650.JHWL01000003_gene2834	636.0	0	N/A	N/A
Pfam	UHGV-1391402_11	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1391402_11	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1391402_11	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1391402_12	phrog_511	244.7	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-1391402_12	1410650.JHWL01000003_gene2827	323.0	0	N/A	N/A
structural_annotation	UHGV-1391402_12	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1391402_13	537007.BLAHAN_05255	58.5	0.00000229	N/A	N/A
PHROG	UHGV-1391402_14	phrog_37329	48.0	0.00000000000014	N/A	unknown function
Pfam	UHGV-1391402_14	PF00041	N/A	N/A	Fibronectin type III domain	fn3
COG	UHGV-1391402_14	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
structural_annotation	UHGV-1391402_14	PF17744,PF16655,MF_01905,NF038116,COG3979,COG2033	N/A	N/A	N/A	N/A
PHROG	UHGV-1391402_16	phrog_156	290.9	0	portal protein	head and packaging
eggNOG-mapper	UHGV-1391402_16	1410650.JHWL01000003_gene2833	540.0	0	N/A	N/A
structural_annotation	UHGV-1391402_16	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1391402_17	phrog_13908	144.4	7.69313e-43	N/A	unknown function
eggNOG-mapper	UHGV-1391402_17	1410650.JHWL01000003_gene2831	108.0	6.92e-25	N/A	N/A
PHROG	UHGV-1391402_18	phrog_1357	211.6	0	major head protein	head and packaging
UniRef90	UHGV-1391402_18	UniRef90_A0A2V2CFL5	395.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-1391402_18	1410650.JHWL01000003_gene2830	283.0	0	N/A	N/A
Pfam	UHGV-1391402_18	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-1391402_18	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1391402_18	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1391402_20	phrog_12105	122.2	2.8e-36	N/A	unknown function
eggNOG-mapper	UHGV-1391402_20	1226322.HMPREF1545_03850	60.1	0.000000000797	N/A	N/A
UniRef90	UHGV-1391402_21	UniRef90_R5DCX9	189.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1391402_21	1410650.JHWL01000003_gene2815	137.0	7.19e-34	N/A	N/A
PHROG	UHGV-1391402_22	phrog_22978	135.2	1.4013e-45	N/A	unknown function
eggNOG-mapper	UHGV-1391402_22	1408437.JNJN01000039_gene389	477.0	0	heme binding	N/A
COG	UHGV-1391402_22	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-1391402_24	PF18962,NF011773	N/A	N/A	N/A	N/A
KOfam	UHGV-1391402_25	K16628	178.7	0	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-1391402_25	phrog_819	103.3	0	tail protein	tail
eggNOG-mapper	UHGV-1391402_25	1232443.BAIA02000078_gene14	84.0	0.0000000000000264	nuclear chromosome segregation	N/A
Pfam	UHGV-1391402_25	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-1391402_25	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
PHROG	UHGV-1391402_26	phrog_37900	42.3	0.00000000000053	N/A	unknown function
UniRef90	UHGV-1391402_26	UniRef90_R5IRZ6	266.0	0	N/A	N/A
eggNOG-mapper	UHGV-1391402_26	1519439.JPJG01000060_gene1894	180.0	0	N/A	N/A
Pfam	UHGV-1391402_26	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-1391402_26	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-1391402_26	PF19789,PF14686	N/A	N/A	N/A	N/A
PHROG	UHGV-1391402_27	phrog_18725	49.5	0.000000000000084	N/A	unknown function
eggNOG-mapper	UHGV-1391402_27	693746.OBV_18220	85.9	3.13e-20	N/A	N/A
PHROG	UHGV-1391402_30	phrog_6918	95.0	5.2e-28	holin	lysis
UniRef90	UHGV-1391402_30	UniRef90_A0A316QCY7	103.0	1.22e-26	Holin	N/A
eggNOG-mapper	UHGV-1391402_30	1297617.JPJD01000020_gene301	102.0	8.51e-27	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-1391402_30	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-1391402_30	PF09682,TIGR01673	N/A	N/A	N/A	N/A
PHROG	UHGV-1391402_31	phrog_14030	156.2	0	N/A	unknown function
UniRef90	UHGV-1391402_31	UniRef90_R6LL81	271.0	0	SLH domain-containing protein	N/A
eggNOG-mapper	UHGV-1391402_31	1121866.AUGK01000003_gene1444	96.3	4.22e-20	amidase activity	N/A
COG	UHGV-1391402_31	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
PHROG	UHGV-1391402_33	phrog_16490	54.1	0.0000000000000035	N/A	unknown function
eggNOG-mapper	UHGV-1391402_33	641112.ACOK01000103_gene525	53.9	0.00000285	N/A	N/A
structural_annotation	UHGV-1391402_34	PF18573,NF033147	N/A	N/A	N/A	N/A
UniRef90	UHGV-1391402_35	UniRef90_A0A8F0WD75	75.5	0.0000000000000591	RNA polymerase sigma factor/Ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-1391402_35	1378168.N510_03079	68.6	0.0000000000105	N/A	N/A
KOfam	UHGV-1391402_36	K14059	207.4	0	int; integrase	N/A
PHROG	UHGV-1391402_36	phrog_1	198.3	0	integrase	integration and excision
UniRef90	UHGV-1391402_36	UniRef90_A0A212JT52	254.0	0	Putative Integrase family protein	N/A
eggNOG-mapper	UHGV-1391402_36	1507.HMPREF0262_00307	199.0	0	Phage integrase family	N/A
Pfam	UHGV-1391402_36	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1391402_36	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1391402_36	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1391402_36	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
Pfam	UHGV-1391402_37	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1391402_37	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1391402_39	246194.CHY_1698	55.1	0.00000779	Staphylococcal nuclease homologue	N/A
Pfam	UHGV-1391402_39	PF02805	N/A	N/A	Metal binding domain of Ada	Ada_Zn_binding
COG	UHGV-1391402_39	COG1525	N/A	N/A	Endonuclease YncB, thermonuclease family	N/A
KOfam	UHGV-1391402_41	K22300	50.0	0.000000000000069	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1391402_41	phrog_2967	43.2	0.000000000007	transcriptional regulator	transcription regulation
UniRef90	UHGV-1391402_41	UniRef90_G9YR83	109.0	2.13e-28	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1391402_41	748224.HMPREF9436_01444	102.0	3.83e-26	N/A	N/A
Pfam	UHGV-1391402_41	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1391402_41	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1391402_41	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1391402_44	PF10548	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1391402_46	NF041247	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1391402_47	PF05082	N/A	N/A	N/A	N/A
KOfam	UHGV-1391402_51	K00390	106.0	4.1e-31	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1391402_51	phrog_424	126.0	2.9e-37	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1391402_51	UniRef90_UPI001D087498	428.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-1391402_51	1408437.JNJN01000032_gene2312	335.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-1391402_51	BrxP_00001	71.1	1.1e-20	BrxP	BREX
Pfam	UHGV-1391402_51	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1391402_51	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1391402_51	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
UniRef90	UHGV-1391402_52	UniRef90_A0A845MZZ9	110.0	1.29e-28	N/A	N/A
Pfam	UHGV-1391402_52	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-1391402_52	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-1391402_53	phrog_3136	135.4	1.90001e-40	N/A	unknown function
UniRef90	UHGV-1391402_53	UniRef90_A0A843H9M8	102.0	8.84e-24	ASCH domain-containing protein	N/A
COG	UHGV-1391402_53	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1391402_53	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-1391402_54	phrog_38832	54.5	0.0000000000000022	N/A	unknown function
eggNOG-mapper	UHGV-1391402_54	665956.HMPREF1032_00143	65.1	0.0000000000868	N/A	N/A
PHROG	UHGV-1391402_57	phrog_190	43.7	0.0000000000047	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1391402_57	UniRef90_UPI0018996508	60.1	0.000000000332	N/A	N/A
eggNOG-mapper	UHGV-1391402_57	1268072.PSAB_06025	56.2	0.00000000583	N/A	N/A
Pfam	UHGV-1391402_57	PF06356	N/A	N/A	N/A	DUF1064

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1391402	Yes	42,222	59	100	1
UHGV-0050398	No	34,017	59	81	1
UHGV-1474447	No	30,611	59	73	1
UHGV-1420065	No	24,440	59	58	1
UHGV-1555682	No	11,208	61	27	1