vOTU vOTU-069699

vOTU: vOTU-069699

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-069699
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00096 → vGENUS-03093 → vSUBGEN-01600 → vOTU-069699
Host lineage	Bacteria → Firmicutes → Bacilli → Lactobacillales → Aerococcaceae → Granulicatella → Granulicatella adiacens
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1526616
Biosample ID	SAMEA2738177
Genome length (bp)	37,036 bps
CheckV completeness	99.90% (High-quality)
CDS count	49
CDS density	94.47%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Lactobacillales → Aerococcaceae → Granulicatella → Granulicatella adiacens	Total connections	4	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1526616_1	K14059	191.8	0	int; integrase	N/A
PHROG	UHGV-1526616_1	phrog_1	211.8	0	integrase	integration and excision
UniRef90	UHGV-1526616_1	UniRef90_UPI00066BD636	684.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-1526616_1	1235801.C822_00101	283.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1526616_1	PF13102	N/A	N/A	Phage integrase SAM-like domain	Phage_int_SAM_5
Pfam	UHGV-1526616_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1526616_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1526616_1	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1526616_2	phrog_27136	131.8	1.3e-39	N/A	unknown function
UniRef90	UHGV-1526616_2	UniRef90_UPI001CED3949	129.0	3.43e-34	zinc ribbon domain-containing protein	N/A
eggNOG-mapper	UHGV-1526616_2	1282664.H354_06486	124.0	6.9e-33	Short C-terminal domain	N/A
KOfam	UHGV-1526616_3	K01356	104.9	9.8e-31	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-1526616_3	phrog_4	110.7	1.6e-32	transcriptional repressor	transcription regulation
UniRef90	UHGV-1526616_3	UniRef90_UPI00066E894B	282.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1526616_3	1234679.BN424_2663	211.0	0	Peptidase S24-like	N/A
Pfam	UHGV-1526616_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-1526616_3	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-1526616_3	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1526616_3	PF00717,PF12844,MF_00015,TIGR00498,TIGR03070,COG1974,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1526616_4	UniRef90_A0A1Q8EFY9	90.9	1.4e-22	Cro-like protein	N/A
eggNOG-mapper	UHGV-1526616_4	1123314.AUIO01000002_gene1998	62.0	0.00000000000617	sequence-specific DNA binding	N/A
Pfam	UHGV-1526616_4	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-1526616_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1526616_4	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1526616_8	K03546	65.9	5e-19	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-1526616_8	phrog_1499	500.8	0	N/A	unknown function
UniRef90	UHGV-1526616_8	UniRef90_UPI00066DDE39	778.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1526616_8	1140001.I571_01812	558.0	0	AAA domain	N/A
Pfam	UHGV-1526616_8	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-1526616_8	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1526616_8	PF11398,MF_00365,TIGR00634,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-1526616_9	phrog_124	258.1	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1526616_9	UniRef90_UPI00066A31E3	622.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-1526616_9	1403946.Q615_SPAC00127G0154	463.0	0	AAA domain	N/A
Pfam	UHGV-1526616_9	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-1526616_9	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-1526616_10	phrog_2698	214.4	0	N/A	unknown function
UniRef90	UHGV-1526616_10	UniRef90_A0A4V0ECJ9	235.0	0	N/A	N/A
eggNOG-mapper	UHGV-1526616_10	1403946.Q615_SPAC00127G0153	243.0	0	N/A	N/A
structural_annotation	UHGV-1526616_10	PF17426,NF005674	N/A	N/A	N/A	N/A
KOfam	UHGV-1526616_11	K17677	366.0	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-1526616_11	phrog_16	280.4	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1526616_11	UniRef90_UPI00066ACFC6	1016.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-1526616_11	1123309.AQYB01000025_gene1732	811.0	0	helicase	N/A
PADLOC	UHGV-1526616_11	mREase_IV_00005	137.1	1.4e-40	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-1526616_11	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-1526616_11	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1526616_11	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-1526616_11	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
KOfam	UHGV-1526616_12	K07505	421.4	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-1526616_12	phrog_2597	1211.9	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1526616_12	UniRef90_UPI00066B3960	1508.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1526616_12	936580.HMPREF1516_0733	1011.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-1526616_12	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-1526616_12	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-1526616_12	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-1526616_12	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
PHROG	UHGV-1526616_13	phrog_16687	90.6	9e-27	N/A	unknown function
eggNOG-mapper	UHGV-1526616_13	1214217.ALNF01000014_gene1395	68.9	0.00000000000000909	N/A	N/A
KOfam	UHGV-1526616_14	K01160	53.8	0.000000000000005	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1526616_14	phrog_140	103.7	1.6e-30	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1526616_14	UniRef90_UPI00066CDB9E	181.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1526616_14	1123315.AUIP01000003_gene219	171.0	0	crossover junction endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1526616_14	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1526616_14	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1526616_14	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1526616_15	phrog_3745	69.6	1.9e-20	N/A	unknown function
eggNOG-mapper	UHGV-1526616_15	1423734.JCM14202_3068	57.8	0.000000000672	N/A	N/A
structural_annotation	UHGV-1526616_17	NF007271	N/A	N/A	N/A	N/A
PHROG	UHGV-1526616_20	phrog_17088	54.4	0.0000000000000024	N/A	unknown function
KOfam	UHGV-1526616_23	K06191	86.8	2.6e-25	nrdH; glutaredoxin-like protein NrdH	N/A
PHROG	UHGV-1526616_23	phrog_22	67.3	2.1e-19	thioredoxin domain	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1526616_23	UniRef90_UPI00065F7C56	148.0	4.2039e-45	glutaredoxin family protein	N/A
eggNOG-mapper	UHGV-1526616_23	638301.HMPREF0444_1516	102.0	1.39e-27	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins	N/A
Pfam	UHGV-1526616_23	PF00462	N/A	N/A	Glutaredoxin	Glutaredoxin
COG	UHGV-1526616_23	COG0695	N/A	N/A	Glutaredoxin	N/A
structural_annotation	UHGV-1526616_23	PF00462,MF_01132,NF007657,COG0695	N/A	N/A	N/A	N/A
PHROG	UHGV-1526616_24	phrog_2882	376.4	0	DNA methyltransferase	other
UniRef90	UHGV-1526616_24	UniRef90_UPI0006611DD5	430.0	0	DNA methyltransferase	N/A
eggNOG-mapper	UHGV-1526616_24	565653.EGBG_01954	323.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
Pfam	UHGV-1526616_24	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1526616_24	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1526616_24	PF00145,TIGR00675,COG0270	N/A	N/A	N/A	N/A
UniRef90	UHGV-1526616_25	UniRef90_A0A1H9IMX6	129.0	6e-36	Phage transcriptional activator, RinA family	N/A
NCBIFam	UHGV-1526616_25	TIGR01636.1	N/A	N/A	phage transcriptional regulator, RinA family	N/A
structural_annotation	UHGV-1526616_25	PF05263,TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-1526616_26	K07474	114.5	1.7e-33	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1526616_26	phrog_51	129.3	2.4e-38	terminase small subunit	head and packaging
UniRef90	UHGV-1526616_26	UniRef90_UPI00066EF1F7	283.0	0	terminase small subunit	N/A
eggNOG-mapper	UHGV-1526616_26	764299.STRIC_2128	164.0	0	Terminase small subunit	N/A
Pfam	UHGV-1526616_26	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1526616_26	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1526616_26	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-1526616_27	K06909	80.7	1.9e-23	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1526616_27	phrog_2	68.6	1.3e-19	terminase large subunit	head and packaging
UniRef90	UHGV-1526616_27	UniRef90_UPI00069F6A29	904.0	0	terminase	N/A
eggNOG-mapper	UHGV-1526616_27	1282664.H354_06621	711.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-1526616_27	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1526616_27	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1526616_28	phrog_533	280.4	0	portal protein	head and packaging
UniRef90	UHGV-1526616_28	UniRef90_UPI001EFBE2BA	960.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1526616_28	1282664.H354_06626	670.0	0	N/A	N/A
Pfam	UHGV-1526616_28	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1526616_28	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1526616_29	K11044	51.7	0.000000000000014	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	N/A
PHROG	UHGV-1526616_29	phrog_581	244.3	0	minor head protein	head and packaging
UniRef90	UHGV-1526616_29	UniRef90_A0A139R8H5	444.0	0	Phage putative head morphogenesis protein, SPP1 gp7 family	N/A
eggNOG-mapper	UHGV-1526616_29	1282664.H354_06636	442.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1526616_29	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-1526616_29	PF03496	N/A	N/A	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
structural_annotation	UHGV-1526616_29	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-1526616_31	phrog_2303	125.8	3.9e-37	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-1526616_31	1282664.H354_06656	221.0	0	N/A	N/A
PHROG	UHGV-1526616_32	phrog_422	337.9	0	major head protein	head and packaging
UniRef90	UHGV-1526616_32	UniRef90_A0A4V0BQY3	442.0	0	Main capsid protein Gp34-like protein	N/A
eggNOG-mapper	UHGV-1526616_32	1282664.H354_06661	442.0	0	N/A	N/A
structural_annotation	UHGV-1526616_32	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1526616_33	phrog_1378	42.9	0.0000000000074	N/A	unknown function
PHROG	UHGV-1526616_34	phrog_541	70.9	1.6e-20	head-tail adaptor	connector
eggNOG-mapper	UHGV-1526616_34	1282664.H354_06671	141.0	9.01035e-42	N/A	N/A
PHROG	UHGV-1526616_35	phrog_8710	131.2	3.1e-39	N/A	unknown function
eggNOG-mapper	UHGV-1526616_35	1282664.H354_06676	155.0	0	N/A	N/A
structural_annotation	UHGV-1526616_35	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1526616_36	phrog_556	54.0	0.0000000000000026	minor head protein	head and packaging
UniRef90	UHGV-1526616_36	UniRef90_UPI0018E07468	226.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1526616_36	1282664.H354_06681	175.0	0	N/A	N/A
PHROG	UHGV-1526616_37	phrog_2595	79.4	3.8e-23	head-tail connector protein	connector
UniRef90	UHGV-1526616_37	UniRef90_UPI001D0627B3	123.0	1.09e-33	minor capsid protein	N/A
eggNOG-mapper	UHGV-1526616_37	1282664.H354_06686	203.0	0	N/A	N/A
Pfam	UHGV-1526616_37	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-1526616_37	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-1526616_38	phrog_820	118.9	2.7e-35	major tail protein	tail
eggNOG-mapper	UHGV-1526616_38	1282664.H354_06691	232.0	0	N/A	N/A
structural_annotation	UHGV-1526616_38	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1526616_39	phrog_390	44.4	0.0000000000034	Arc-like repressor	transcription regulation
PHROG	UHGV-1526616_40	phrog_8300	71.9	8.1e-21	N/A	unknown function
eggNOG-mapper	UHGV-1526616_40	1282664.H354_06701	87.4	3.39e-21	N/A	N/A
structural_annotation	UHGV-1526616_40	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1526616_41	phrog_1535	549.0	0	tail length tape measure protein	tail
UniRef90	UHGV-1526616_41	UniRef90_A0A139R8H3	801.0	0	Phage tail length tape-measure protein	N/A
eggNOG-mapper	UHGV-1526616_41	1282664.H354_06711	781.0	0	Phage-related minor tail protein	N/A
COG	UHGV-1526616_41	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1526616_41	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1526616_42	phrog_1194	58.4	3.4e-17	N/A	unknown function
eggNOG-mapper	UHGV-1526616_42	1282664.H354_06716	133.0	6.59e-39	N/A	N/A
structural_annotation	UHGV-1526616_42	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1526616_43	phrog_588	228.2	0	tail fiber protein and host specificity	tail
UniRef90	UHGV-1526616_43	UniRef90_UPI0018E9B800	498.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-1526616_43	1282664.H354_06721	496.0	0	outer membrane autotransporter barrel domain protein	N/A
Pfam	UHGV-1526616_43	PF01259	N/A	N/A	SAICAR synthetase	SAICAR_synt
COG	UHGV-1526616_43	COG3468	N/A	N/A	Autotransporter adhesin AidA	N/A
PHROG	UHGV-1526616_44	phrog_372	339.0	0	tail protein	tail
UniRef90	UHGV-1526616_44	UniRef90_UPI00065F928E	1201.0	0	N/A	N/A
eggNOG-mapper	UHGV-1526616_44	1282664.H354_07750	372.0	0	N/A	N/A
Pfam	UHGV-1526616_44	PF05895	N/A	N/A	N/A	DUF859
structural_annotation	UHGV-1526616_44	PF05895,MF_04116,NF010681,COG3291	N/A	N/A	N/A	N/A
PHROG	UHGV-1526616_46	phrog_199	66.3	3.5e-19	holin	lysis
UniRef90	UHGV-1526616_46	UniRef90_UPI00066B4B9C	244.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-1526616_46	638301.HMPREF0444_1493	188.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-1526616_46	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1526616_46	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
structural_annotation	UHGV-1526616_46	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-1526616_47	phrog_608	64.1	1e-18	holin	lysis
UniRef90	UHGV-1526616_47	UniRef90_UPI00066CB494	196.0	0	phage holin, LLH family	N/A
eggNOG-mapper	UHGV-1526616_47	1336234.JAGN01000004_gene510	70.9	0.0000000000000359	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-1526616_47	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-1526616_47	PF09682,TIGR01673	N/A	N/A	N/A	N/A
KOfam	UHGV-1526616_48	K06558	76.1	3.1e-22	MSR1, CD204; macrophage scavenger receptor 1	N/A
PHROG	UHGV-1526616_48	phrog_32123	880.1	0	N/A	unknown function
UniRef90	UHGV-1526616_48	UniRef90_UPI0009E45001	747.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-1526616_48	997830.HMPREF1124_0614	602.0	0	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-1526616_48	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-1526616_48	COG3468	N/A	N/A	Autotransporter adhesin AidA	N/A
structural_annotation	UHGV-1526616_48	PF10651,NF032891	N/A	N/A	N/A	N/A
PHROG	UHGV-1526616_49	phrog_1309	171.1	0	endolysin	lysis
UniRef90	UHGV-1526616_49	UniRef90_UPI00128D03D8	461.0	0	CHAP domain-containing protein	N/A
eggNOG-mapper	UHGV-1526616_49	997830.HMPREF1124_0615	212.0	0	CHAP domain	N/A
Pfam	UHGV-1526616_49	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-1526616_49	PF19127	N/A	N/A	Choline-binding repeat	Choline_bind_3
COG	UHGV-1526616_49	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
structural_annotation	UHGV-1526616_49	PF19127,PF05257,TIGR04035,TIGR02594,COG5263	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1526616	Yes	37,036	41	100	1