vOTU vOTU-070041

vOTU: vOTU-070041

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-070041
Number of genomes	10
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp900314705
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00027 → vGENUS-00912 → vOTU-070041
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp900314705
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0379828
Biosample ID	N/A
Genome length (bp)	35,441 bps
CheckV completeness	88.71% (Medium-quality)
CDS count	49
CDS density	93.57%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp900314705	Total connections	87	Host agreement	86.21
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp900314705	Total connections	161	Host agreement	95.03

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 88.71)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0379828_1	K07273	195.8	0	acm; lysozyme	N/A
PHROG	UHGV-0379828_1	phrog_291	173.0	0	endolysin	lysis
UniRef90	UHGV-0379828_1	UniRef90_R7NMS6	355.0	0	Glycosyl hydrolase family 25	N/A
eggNOG-mapper	UHGV-0379828_1	877420.ATVW01000004_gene383	147.0	3.02e-38	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0379828_1	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0379828_1	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-0379828_1	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0379828_1	PF01183,PF01476,TIGR02899,NF007360,COG3757,COG1388	N/A	N/A	N/A	N/A
PHROG	UHGV-0379828_2	phrog_199	89.8	2.9e-26	holin	lysis
UniRef90	UHGV-0379828_2	UniRef90_A0A348ZBJ4	278.0	0	Holin	N/A
eggNOG-mapper	UHGV-0379828_2	411459.RUMOBE_01714	207.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0379828_2	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0379828_2	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0379828_2	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0379828_2	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0379828_5	phrog_18190	47.2	7.7e-23	N/A	unknown function
eggNOG-mapper	UHGV-0379828_5	742733.HMPREF9469_01807	63.9	0.0000000583	N/A	N/A
structural_annotation	UHGV-0379828_5	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0379828_6	phrog_1194	43.7	0.000000000004	N/A	unknown function
eggNOG-mapper	UHGV-0379828_6	1235790.C805_00088	86.7	1.05e-19	N/A	N/A
Pfam	UHGV-0379828_6	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0379828_6	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0379828_7	phrog_1535	238.3	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0379828_7	411902.CLOBOL_00126	113.0	2.01e-22	N/A	N/A
COG	UHGV-0379828_7	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-0379828_8	phrog_9700	120.7	1.2e-35	N/A	unknown function
UniRef90	UHGV-0379828_8	UniRef90_UPI001B3C6D17	468.0	0	leucine-rich repeat protein	N/A
eggNOG-mapper	UHGV-0379828_8	476272.RUMHYD_01979	145.0	1.77e-37	N/A	N/A
Pfam	UHGV-0379828_8	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
PHROG	UHGV-0379828_9	phrog_706	142.4	2.7003e-42	N/A	unknown function
UniRef90	UHGV-0379828_9	UniRef90_UPI001B3C82AE	374.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0379828_9	1160721.RBI_II00530	204.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0379828_9	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0379828_9	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0379828_10	phrog_11299	129.8	1.6e-38	N/A	unknown function
eggNOG-mapper	UHGV-0379828_10	1449050.JNLE01000003_gene3883	100.0	2.34e-25	N/A	N/A
structural_annotation	UHGV-0379828_10	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0379828_11	phrog_3099	117.5	9.7e-35	N/A	unknown function
eggNOG-mapper	UHGV-0379828_11	1160721.RBI_II00532	186.0	0	N/A	N/A
structural_annotation	UHGV-0379828_11	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0379828_12	phrog_3266	96.4	2.3e-28	tail completion	connector
eggNOG-mapper	UHGV-0379828_12	1449050.JNLE01000003_gene3885	145.0	9.30462e-43	N/A	N/A
structural_annotation	UHGV-0379828_12	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0379828_13	phrog_556	117.3	6.6e-35	minor head protein	head and packaging
UniRef90	UHGV-0379828_13	UniRef90_UPI001B3C5A2B	327.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0379828_13	1449050.JNLE01000003_gene3886	137.0	1.61e-39	N/A	N/A
Pfam	UHGV-0379828_13	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0379828_13	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0379828_14	phrog_3366	42.5	0.000000000002	N/A	unknown function
eggNOG-mapper	UHGV-0379828_14	1449050.JNLE01000003_gene3887	63.9	0.0000000000113	N/A	N/A
PHROG	UHGV-0379828_15	phrog_541	95.0	6.2e-28	head-tail adaptor	connector
UniRef90	UHGV-0379828_15	UniRef90_A0A371AQT0	96.3	2.38e-23	N/A	N/A
eggNOG-mapper	UHGV-0379828_15	1449050.JNLE01000003_gene3888	106.0	3.05e-28	N/A	N/A
PHROG	UHGV-0379828_16	phrog_422	236.8	0	major head protein	head and packaging
eggNOG-mapper	UHGV-0379828_16	693746.OBV_18090	343.0	0	N/A	N/A
structural_annotation	UHGV-0379828_16	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0379828_17	phrog_194	105.3	7.2e-31	head scaffolding protein	head and packaging
UniRef90	UHGV-0379828_17	UniRef90_UPI001B3C6D0D	339.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0379828_17	411460.RUMTOR_02088	132.0	9.63e-37	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0379828_17	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0379828_17	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0379828_18	phrog_3675	108.3	3.3e-32	N/A	unknown function
UniRef90	UHGV-0379828_18	UniRef90_UPI001C02868E	131.0	1.39e-37	YjcQ family protein	N/A
eggNOG-mapper	UHGV-0379828_18	1235799.C818_04221	130.0	4.44e-38	YjcQ protein	N/A
Pfam	UHGV-0379828_18	PF09639	N/A	N/A	YjcQ protein	YjcQ
structural_annotation	UHGV-0379828_18	PF09639,TIGR04176,COG2345	N/A	N/A	N/A	N/A
PHROG	UHGV-0379828_20	phrog_581	323.7	0	minor head protein	head and packaging
UniRef90	UHGV-0379828_20	UniRef90_UPI001B3C97A7	1195.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0379828_20	1449050.JNLE01000003_gene3892	372.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0379828_20	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0379828_20	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0379828_20	PF06152,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0379828_21	phrog_533	296.8	0	portal protein	head and packaging
UniRef90	UHGV-0379828_21	UniRef90_UPI001B3C997D	879.0	0	phage capsid protein	N/A
eggNOG-mapper	UHGV-0379828_21	1304866.K413DRAFT_3035	449.0	0	N/A	N/A
structural_annotation	UHGV-0379828_21	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0379828_22	K06909	82.0	7.7e-24	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0379828_22	phrog_2	81.5	1.8e-23	terminase large subunit	head and packaging
UniRef90	UHGV-0379828_22	UniRef90_UPI001B3C8BA8	859.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0379828_22	1304866.K413DRAFT_3034	600.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0379828_22	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0379828_22	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0379828_22	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0379828_23	phrog_309	139.4	8.89965e-42	terminase small subunit	head and packaging
UniRef90	UHGV-0379828_23	UniRef90_UPI001B3C9B19	266.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0379828_23	693746.OBV_18020	139.0	2.65e-40	transposase activity	N/A
COG	UHGV-0379828_23	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-0379828_23	PF07141	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-0379828_24	cluster_138565	50.8	0.000000000392	NA	N/A
AcrCatalog	UHGV-0379828_25	cluster_211731	123.0	1.5e-34	NA	N/A
Pfam	UHGV-0379828_25	PF20505	N/A	N/A	N/A	DUF6731
structural_annotation	UHGV-0379828_25	PF20505	N/A	N/A	N/A	N/A
PHROG	UHGV-0379828_26	phrog_36	74.0	2.4e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-0379828_26	UniRef90_A0A2N0UXQ6	128.0	2.14e-35	N/A	N/A
eggNOG-mapper	UHGV-0379828_26	1121289.JHVL01000007_gene2767	72.4	0.0000000000000278	sigma factor activity	N/A
COG	UHGV-0379828_26	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
eggNOG-mapper	UHGV-0379828_27	428127.EUBDOL_01518	49.3	0.00000167	N/A	N/A
structural_annotation	UHGV-0379828_28	PF04012	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0379828_29	PF09889	N/A	N/A	N/A	N/A
KOfam	UHGV-0379828_32	K01160	46.2	0.0000000000012	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0379828_32	phrog_140	100.3	2.1e-29	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0379828_32	UniRef90_UPI001B3C90F3	294.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0379828_32	478749.BRYFOR_07588	194.0	0	endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0379828_32	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0379828_32	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0379828_32	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0379828_33	K07505	399.0	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-0379828_33	phrog_2597	1168.5	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0379828_33	UniRef90_UPI001B3C4CA9	1028.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0379828_33	394503.Ccel_3304	944.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-0379828_33	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-0379828_33	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0379828_33	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-0379828_33	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-0379828_34	K17677	360.6	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0379828_34	phrog_16	290.3	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0379828_34	UniRef90_UPI001B3C4DBD	1053.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-0379828_34	1235798.C817_03499	833.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-0379828_34	mREase_IV_00005	135.0	6.89999e-40	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0379828_34	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0379828_34	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0379828_34	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0379828_34	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0379828_35	phrog_2698	200.7	0	N/A	unknown function
UniRef90	UHGV-0379828_35	UniRef90_UPI001B3C89FE	320.0	0	N/A	N/A
eggNOG-mapper	UHGV-0379828_35	394503.Ccel_3308	143.0	1.23006e-41	N/A	N/A
structural_annotation	UHGV-0379828_35	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0379828_36	phrog_124	222.3	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0379828_36	UniRef90_UPI001B3C5FE5	717.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0379828_36	394503.Ccel_3309	370.0	0	AAA domain	N/A
Pfam	UHGV-0379828_36	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0379828_36	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-0379828_37	K03546	61.3	1.1e-17	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-0379828_37	phrog_1499	478.3	0	N/A	unknown function
UniRef90	UHGV-0379828_37	UniRef90_UPI001B3C9718	750.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0379828_37	645991.Sgly_0320	477.0	0	domain protein	N/A
Pfam	UHGV-0379828_37	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0379828_37	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0379828_37	PF11398,MF_00365,TIGR00634,COG0497	N/A	N/A	N/A	N/A
UniRef90	UHGV-0379828_42	UniRef90_UPI001B3C932B	164.0	0	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0379828_42	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0379828_42	PF13443,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0379828_45	K07741	103.2	5.8e-30	antB; anti-repressor protein	N/A
PHROG	UHGV-0379828_45	phrog_130	272.4	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0379828_45	UniRef90_UPI001B3C6365	529.0	0	phage antirepressor KilAC domain-containing protein	N/A
eggNOG-mapper	UHGV-0379828_45	1120978.KB894083_gene924	327.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0379828_45	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0379828_45	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0379828_45	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0379828_45	PF03374,PF02498,TIGR02681,COG3617,COG3645	N/A	N/A	N/A	N/A
KOfam	UHGV-0379828_46	K07729	51.2	0.000000000000027	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0379828_46	phrog_3	41.6	0.00000000005	transcriptional repressor	transcription regulation
UniRef90	UHGV-0379828_46	UniRef90_UPI001B3C54CA	135.0	3.28001e-40	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0379828_46	1401067.HMPREF0872_06900	61.2	0.00000000000924	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0379828_46	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0379828_46	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0379828_46	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0379828_47	phrog_2967	73.2	4.2e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-0379828_47	UniRef90_R6QZY9	108.0	3.18e-28	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0379828_47	1256908.HMPREF0373_00643	87.8	1.6e-20	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0379828_47	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0379828_47	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0379828_47	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0379828_48	phrog_1914	91.0	4.7e-27	N/A	unknown function
UniRef90	UHGV-0379828_48	UniRef90_UPI001B3CA3BF	383.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0379828_48	1234593.ANBY01000020_gene1371	62.0	0.00000000336	IrrE N-terminal-like domain	N/A
Pfam	UHGV-0379828_48	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0379828_48	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0379828_48	PF06114,COG2856	N/A	N/A	N/A	N/A
UniRef90	UHGV-0379828_49	UniRef90_A0A348ZC97	359.0	0	UDP-N-acetylglucosamine kinase	N/A
eggNOG-mapper	UHGV-0379828_49	246199.CUS_4649	192.0	0	zeta toxin	N/A
Pfam	UHGV-0379828_49	PF06414	N/A	N/A	Zeta toxin	Zeta_toxin
COG	UHGV-0379828_49	COG4185	N/A	N/A	Predicted ABC-type ATPase or kinase	N/A
structural_annotation	UHGV-0379828_49	PF06414,MF_00234,NF041574,COG4185	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0379828	Yes	35,441	34	89	1
UHGV-0126765	No	52,309	32	100	1
UHGV-1542969	No	34,789	34	87	1
UHGV-1478699	No	31,776	34	79	1
UHGV-1439375	No	29,138	34	73	1
UHGV-0241208	No	26,410	35	66	1
UHGV-1705043	No	18,687	33	49	1
UHGV-1661733	No	18,399	33	48	1
UHGV-2155916	No	16,664	34	43	1
UHGV-0133648	No	10,307	34	25	1