vOTU vOTU-070239

vOTU: vOTU-070239

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-070239
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00094 → vGENUS-00121 → vSUBGEN-02769 → vOTU-070239
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170 → CAG-170 sp000432135
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0171835
Biosample ID	SAMN09781726
Genome length (bp)	34,497 bps
CheckV completeness	93.82% (High-quality)
CDS count	61
CDS density	92.28%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170 → CAG-170 sp000432135	Total connections	288	Host agreement	92.71
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170 → CAG-170 sp003516765	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 93.82)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0171835_1	phrog_1066	131.2	3.8e-39	N/A	unknown function
eggNOG-mapper	UHGV-0171835_1	1382358.JHVN01000024_gene1703	122.0	1.93e-34	N/A	N/A
structural_annotation	UHGV-0171835_1	PF05119,TIGR01558	N/A	N/A	N/A	N/A
PHROG	UHGV-0171835_2	phrog_9	374.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0171835_2	UniRef90_A0A1Y3W5R1	784.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0171835_2	1203606.HMPREF1526_00981	729.0	0	Terminase	N/A
Pfam	UHGV-0171835_2	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0171835_2	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0171835_2	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0171835_2	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0171835_3	phrog_12	182.7	0	portal protein	head and packaging
UniRef90	UHGV-0171835_3	UniRef90_R8W4B0	504.0	0	HK97 family phage portal protein	N/A
eggNOG-mapper	UHGV-0171835_3	1203606.HMPREF1526_00980	504.0	0	Portal protein	N/A
Pfam	UHGV-0171835_3	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0171835_3	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0171835_3	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0171835_4	K01358	135.7	5e-40	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0171835_4	phrog_94	203.6	0	head maturation protease	head and packaging
UniRef90	UHGV-0171835_4	UniRef90_UPI0018979DC8	212.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0171835_4	1280689.AUJC01000011_gene1520	191.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0171835_4	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0171835_4	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0171835_4	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0171835_5	phrog_10	177.6	0	major head protein	head and packaging
UniRef90	UHGV-0171835_5	UniRef90_UPI00189AE5FE	405.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0171835_5	1280689.AUJC01000011_gene1521	384.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0171835_5	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0171835_5	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0171835_5	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0171835_5	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0171835_6	phrog_5223	44.1	0.0000000000027	neck protein	connector
UniRef90	UHGV-0171835_6	UniRef90_E6MGY0	57.0	0.0000000157	Putative phage DNA packaging protein	N/A
eggNOG-mapper	UHGV-0171835_6	887929.HMP0721_1264	57.0	0.00000000263	N/A	N/A
PHROG	UHGV-0171835_7	phrog_1951	74.6	1e-21	head-tail adaptor	connector
UniRef90	UHGV-0171835_7	UniRef90_UPI001B02B074	64.3	0.0000000000259	phage head closure protein	N/A
eggNOG-mapper	UHGV-0171835_7	1094508.Tsac_2422	54.3	0.0000000403	Phage head-tail joining protein	N/A
Pfam	UHGV-0171835_7	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0171835_7	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0171835_7	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0171835_7	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0171835_8	1487921.DP68_11350	61.6	0.0000000000701	N/A	N/A
structural_annotation	UHGV-0171835_8	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0171835_9	phrog_5	41.5	0.000000000028	tail completion or Neck1 protein	connector
structural_annotation	UHGV-0171835_9	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0171835_10	phrog_88	86.1	4.7e-25	major tail protein	tail
UniRef90	UHGV-0171835_10	UniRef90_S0FUN2	115.0	6.67e-29	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0171835_10	1195236.CTER_5106	115.0	1.12e-29	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0171835_10	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0171835_10	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0171835_10	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0171835_11	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0171835_12	phrog_33680	145.2	4.1058e-43	N/A	unknown function
UniRef90	UHGV-0171835_12	UniRef90_UPI00098F054B	184.0	1.4013e-45	phage tail protein	N/A
eggNOG-mapper	UHGV-0171835_12	1195236.CTER_5104	187.0	0	nuclear chromosome segregation	N/A
COG	UHGV-0171835_12	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0171835_12	TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0171835_13	phrog_37549	77.6	4.9e-26	virion structural protein	head and packaging
UniRef90	UHGV-0171835_13	UniRef90_A0A3D0W045	226.0	0	Fibronectin type-III domain-containing protein	N/A
eggNOG-mapper	UHGV-0171835_13	1195236.CTER_5103	131.0	4.18e-29	N/A	N/A
structural_annotation	UHGV-0171835_13	PF02010,PF06848,PF19266,MF_04116,NF033679,NF032891,TIGR01633,TIGR04488,COG3401,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0171835_14	phrog_26795	132.2	1.6e-39	N/A	unknown function
UniRef90	UHGV-0171835_14	UniRef90_A0A5J6T4K8	137.0	3.03e-33	Minor tail protein	N/A
eggNOG-mapper	UHGV-0171835_14	1195236.CTER_5102	143.0	8.78e-37	N/A	N/A
structural_annotation	UHGV-0171835_14	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0171835_15	PF18614,MF_00085,NF003076	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0171835_16	PF10651	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0171835_17	411471.SUBVAR_06929	315.0	0	ATPase involved in DNA repair	N/A
COG	UHGV-0171835_17	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
PHROG	UHGV-0171835_18	phrog_37900	297.9	0	N/A	unknown function
UniRef90	UHGV-0171835_18	UniRef90_UPI001C3EA4DF	409.0	0	N/A	N/A
eggNOG-mapper	UHGV-0171835_18	552398.HMPREF0866_03098	226.0	0	N/A	N/A
Pfam	UHGV-0171835_18	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-0171835_18	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-0171835_18	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-0171835_19	phrog_29409	44.1	0.000000000003	N/A	unknown function
PHROG	UHGV-0171835_22	phrog_937	45.7	0.0000000000012	hemolysin	other
PHROG	UHGV-0171835_23	phrog_443	59.9	7.4e-17	holin	lysis
UniRef90	UHGV-0171835_23	UniRef90_A0A4R1QPE5	93.2	1.07e-23	Phage r1t holin	N/A
eggNOG-mapper	UHGV-0171835_23	1469948.JPNB01000002_gene3855	93.2	1.8e-24	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0171835_23	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0171835_23	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-0171835_24	K01447	95.8	7.3e-28	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0171835_24	phrog_670	122.8	4e-36	endolysin	lysis
UniRef90	UHGV-0171835_24	UniRef90_R8W9R7	120.0	7.72e-30	N-acetylmuramoyl-L-alanine amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-0171835_24	1203606.HMPREF1526_00589	120.0	1.3e-30	Ami_2	N/A
Pfam	UHGV-0171835_24	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0171835_24	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0171835_24	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0171835_25	PF02001,MF_00674,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0171835_26	phrog_25567	45.6	0.0000000000009	N/A	unknown function
UniRef90	UHGV-0171835_26	UniRef90_UPI00164AED9E	86.7	8.57e-20	helix-turn-helix domain-containing protein	N/A
COG	UHGV-0171835_26	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0171835_26	PF13560,NF040522,COG2944	N/A	N/A	N/A	N/A
UniRef90	UHGV-0171835_30	UniRef90_A0A8F0WD75	80.1	0.00000000000000102	RNA polymerase sigma factor/Ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0171835_30	1378168.N510_03079	72.0	0.000000000000557	N/A	N/A
KOfam	UHGV-0171835_31	K06400	373.6	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0171835_31	phrog_95	360.2	0	integrase	integration and excision
UniRef90	UHGV-0171835_31	UniRef90_UPI00189960B8	507.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0171835_31	1235835.C814_00825	405.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0171835_31	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0171835_31	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0171835_31	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0171835_31	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0171835_31	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
Pfam	UHGV-0171835_32	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0171835_32	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0171835_32	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0171835_33	phrog_10292	76.9	1e-22	N/A	unknown function
UniRef90	UHGV-0171835_33	UniRef90_A0A416W984	101.0	4.62e-25	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0171835_33	1033810.HLPCO_001631	84.0	3.27e-19	TM2 domain	N/A
Pfam	UHGV-0171835_33	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-0171835_33	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-0171835_33	COG2314	N/A	N/A	N/A	N/A
KOfam	UHGV-0171835_36	K22300	52.2	0.000000000000015	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0171835_36	phrog_2967	42.3	0.0000000000051	transcriptional regulator	transcription regulation
UniRef90	UHGV-0171835_36	UniRef90_A0A1Y4L0A2	130.0	1.14e-36	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0171835_36	748224.HMPREF9436_01444	108.0	1.03e-28	N/A	N/A
Pfam	UHGV-0171835_36	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0171835_36	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0171835_36	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0171835_39	PF10548	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0171835_42	PF05082	N/A	N/A	N/A	N/A
KOfam	UHGV-0171835_46	K00390	95.4	6.9e-28	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0171835_46	phrog_424	117.2	1.4e-34	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0171835_46	UniRef90_UPI001D087498	413.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0171835_46	1408437.JNJN01000032_gene2312	332.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-0171835_46	BrxP_00001	62.2	2.5e-18	BrxP	BREX
Pfam	UHGV-0171835_46	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0171835_46	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0171835_46	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
Pfam	UHGV-0171835_47	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0171835_47	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-0171835_50	phrog_4019	66.5	3.4e-19	N/A	unknown function
PHROG	UHGV-0171835_51	phrog_38832	49.1	0.000000000000056	N/A	unknown function
eggNOG-mapper	UHGV-0171835_51	665956.HMPREF1032_03087	57.8	0.0000000175	N/A	N/A
PHROG	UHGV-0171835_53	phrog_190	103.6	2e-30	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0171835_53	UniRef90_A0A845R8D4	127.0	1.85e-34	N/A	N/A
eggNOG-mapper	UHGV-0171835_53	1226322.HMPREF1545_00295	117.0	1.43e-31	N/A	N/A
Pfam	UHGV-0171835_53	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0171835_53	PF06356	N/A	N/A	N/A	N/A
UniRef90	UHGV-0171835_57	UniRef90_UPI0018D56B0B	72.8	0.00000000000000756	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-0171835_57	1268240.ATFI01000007_gene431	77.4	1.94e-16	DNA methylase	N/A
COG	UHGV-0171835_57	COG0863	N/A	N/A	DNA modification methylase	N/A
KOfam	UHGV-0171835_58	K07319	67.7	1.9e-19	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0171835_58	phrog_67	71.5	1.6e-20	DNA methyltransferase	other
UniRef90	UHGV-0171835_58	UniRef90_A0A413FXK5	182.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0171835_58	718252.FP2_06750	127.0	8.43e-35	DNA methylase	N/A
PADLOC	UHGV-0171835_58	MTase_II_00172	88.2	1.8e-25	Type II methyltransferase	RM
Pfam	UHGV-0171835_58	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0171835_58	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0171835_58	PF01555,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0171835_59	phrog_3584	114.5	8.9e-34	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0171835_59	537013.CLOSTMETH_02141	67.0	0.0000000000873	N/A	N/A
structural_annotation	UHGV-0171835_59	PF21578,MF_00360	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0171835_60	1297617.JPJD01000059_gene2640	76.6	5.09e-16	N/A	N/A
structural_annotation	UHGV-0171835_60	PF06530,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0171835_61	phrog_119	48.4	0.00000000000013	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0171835_61	UniRef90_A0A174XSZ8	122.0	4.27e-34	Prophage LambdaBa04, GP54	N/A
eggNOG-mapper	UHGV-0171835_61	1235793.C809_01915	118.0	1.26e-32	HNH endonuclease	N/A
Pfam	UHGV-0171835_61	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0171835_61	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0171835	Yes	34,497	58	94	1
UHGV-0196163	No	14,337	59	39	1
UHGV-1705843	No	14,426	59	39	1