vOTU vOTU-070317

vOTU: vOTU-070317

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-070317
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00008 → vSUBFAM-00226 → vGENUS-00138 → vSUBGEN-12089 → vOTU-070317
Host lineage	Bacteria → Firmicutes_C → Negativicutes → Acidaminococcales → Acidaminococcaceae → Phascolarctobacterium_A → Phascolarctobacterium_A succinatutens
Host range breadth	Species
Lifestyle	temperate (evidence: geNomad)

Representative genome
Genome ID	UHGV-0183655
Biosample ID	SAMEA2737698
Genome length (bp)	46,450 bps
CheckV completeness	99.65% (High-quality)
CDS count	67
CDS density	90.74%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_C → Negativicutes → Acidaminococcales → Acidaminococcaceae → Phascolarctobacterium_A → Phascolarctobacterium_A succinatutens	Total connections	589	Host agreement	82
PHIST-predicted host lineage	Bacteria → Firmicutes_C → Negativicutes → Acidaminococcales → Acidaminococcaceae → Phascolarctobacterium_A → Phascolarctobacterium_A succinatutens	Total connections	70	Host agreement	78.57

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.65)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0183655_1	UniRef90_A0A7M1RS47	88.6	1.65e-19	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0183655_1	1378168.N510_03079	57.0	0.00000014	N/A	N/A
structural_annotation	UHGV-0183655_2	PF18573,NF033147	N/A	N/A	N/A	N/A
UniRef90	UHGV-0183655_7	UniRef90_A0A316S6W0	94.0	1.39e-23	HTH luxR-type domain-containing protein	N/A
Pfam	UHGV-0183655_7	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
COG	UHGV-0183655_7	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-0183655_7	PF08281,MF_00674,NF001073,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0183655_10	phrog_355	52.7	0.0000000000000065	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0183655_10	UniRef90_UPI001648737F	100.0	1.87e-25	N/A	N/A
eggNOG-mapper	UHGV-0183655_10	999411.HMPREF1092_00897	100.0	2.09e-26	N/A	N/A
Pfam	UHGV-0183655_10	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0183655_10	PF14359	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0183655_11	1392502.JNIO01000008_gene1280	235.0	0	N/A	N/A
structural_annotation	UHGV-0183655_11	PF21277	N/A	N/A	N/A	N/A
PHROG	UHGV-0183655_13	phrog_4105	83.0	2.6e-24	N/A	unknown function
eggNOG-mapper	UHGV-0183655_13	33035.JPJF01000043_gene996	79.0	2.17e-17	N/A	N/A
PHROG	UHGV-0183655_14	phrog_1141	68.3	9.5e-20	tail fiber protein	tail
UniRef90	UHGV-0183655_14	UniRef90_A0A1Q6R2G9	165.0	0	N/A	N/A
eggNOG-mapper	UHGV-0183655_14	1286631.X805_38770	55.1	0.00000173	N/A	N/A
Pfam	UHGV-0183655_14	PF14301	N/A	N/A	N/A	DUF4376
structural_annotation	UHGV-0183655_14	PF14301	N/A	N/A	N/A	N/A
PHROG	UHGV-0183655_15	phrog_19618	74.9	9.6e-22	tail collar protein	tail
UniRef90	UHGV-0183655_15	UniRef90_A0A354WRB2	134.0	1.36e-35	Collar domain-containing protein	N/A
eggNOG-mapper	UHGV-0183655_15	556269.ACDQ01000009_gene1944	119.0	2.99e-28	Phage Tail Collar Domain	N/A
Pfam	UHGV-0183655_15	PF07484	N/A	N/A	Phage Tail Collar Domain	Collar
COG	UHGV-0183655_15	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0183655_15	PF07484,COG4675	N/A	N/A	N/A	N/A
PHROG	UHGV-0183655_16	phrog_13893	58.4	8.2e-17	tail protein	tail
eggNOG-mapper	UHGV-0183655_16	1123288.SOV_1c10770	84.0	0.00000000000000617	Right handed beta helix region	N/A
COG	UHGV-0183655_16	COG5434	N/A	N/A	Polygalacturonase	N/A
structural_annotation	UHGV-0183655_16	PF03906	N/A	N/A	N/A	N/A
PHROG	UHGV-0183655_18	phrog_9880	521.9	0	N/A	unknown function
UniRef90	UHGV-0183655_18	UniRef90_A0A1Q6RQR6	4608.0	0	LPD3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0183655_18	1123288.SOV_1c10750	183.0	3.08286e-43	N/A	N/A
Pfam	UHGV-0183655_18	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
PHROG	UHGV-0183655_19	phrog_10475	44.4	0.000000000001	endolysin	lysis
UniRef90	UHGV-0183655_19	UniRef90_A0A1Q6RQM5	1251.0	0	SLT domain-containing protein	N/A
eggNOG-mapper	UHGV-0183655_19	1123288.SOV_2c10740	196.0	0	N/A	N/A
Pfam	UHGV-0183655_19	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
structural_annotation	UHGV-0183655_19	PF01464,COG0741	N/A	N/A	N/A	N/A
PHROG	UHGV-0183655_20	phrog_418	130.2	4.5e-39	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0183655_20	568816.Acin_1826	107.0	7.02e-26	N/A	N/A
structural_annotation	UHGV-0183655_20	PF16789,TIGR02971,COG3524	N/A	N/A	N/A	N/A
PHROG	UHGV-0183655_21	phrog_308	105.6	4.1e-31	internal virion protein	head and packaging
structural_annotation	UHGV-0183655_21	PF13420,MF_02210,NF011709,COG1247	N/A	N/A	N/A	N/A
PHROG	UHGV-0183655_22	phrog_376	604.0	0	tail protein	tail
UniRef90	UHGV-0183655_22	UniRef90_A0A0U1KV93	354.0	0	N/A	N/A
eggNOG-mapper	UHGV-0183655_22	568816.Acin_1828	663.0	0	N/A	N/A
Pfam	UHGV-0183655_22	PF21722	N/A	N/A	Glycine-rich domain	Gly_rich_2
structural_annotation	UHGV-0183655_22	PF11134,MF_00923,TIGR03300,COG2706	N/A	N/A	N/A	N/A
PHROG	UHGV-0183655_23	phrog_394	156.5	0	tail protein	tail
UniRef90	UHGV-0183655_23	UniRef90_A0A0U1KW64	125.0	9.16e-33	N/A	N/A
eggNOG-mapper	UHGV-0183655_23	1123288.SOV_1c10710	125.0	1.54e-33	N/A	N/A
structural_annotation	UHGV-0183655_23	PF17212	N/A	N/A	N/A	N/A
PHROG	UHGV-0183655_24	phrog_427	66.4	4.1e-19	N/A	unknown function
structural_annotation	UHGV-0183655_24	PF21190	N/A	N/A	N/A	N/A
PHROG	UHGV-0183655_25	phrog_212	203.7	0	major head protein	head and packaging
UniRef90	UHGV-0183655_25	UniRef90_A0A6J5KPX9	212.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0183655_25	568816.Acin_1831	350.0	0	N/A	N/A
Pfam	UHGV-0183655_25	PF20911	N/A	N/A	Major capsid protein GP7	GP7
structural_annotation	UHGV-0183655_25	PF20911,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0183655_26	phrog_458	153.7	1.4013e-45	protease	other
eggNOG-mapper	UHGV-0183655_26	568816.Acin_1832	100.0	2.43e-23	N/A	N/A
PHROG	UHGV-0183655_27	phrog_528	105.3	1.9e-31	N/A	unknown function
eggNOG-mapper	UHGV-0183655_27	1401067.HMPREF0872_06805	93.2	6.81e-23	N/A	N/A
PHROG	UHGV-0183655_28	phrog_332	431.3	0	head-tail adaptor	connector
UniRef90	UHGV-0183655_28	UniRef90_UPI001F3F9DD9	544.0	0	portal protein	N/A
eggNOG-mapper	UHGV-0183655_28	568816.Acin_1834	599.0	0	Bacteriophage head to tail connecting protein	N/A
Pfam	UHGV-0183655_28	PF12236	N/A	N/A	Bacteriophage head to tail connecting protein	Head-tail_con
structural_annotation	UHGV-0183655_28	PF12236,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0183655_30	K06909	86.6	3.7e-25	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0183655_30	phrog_2	160.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-0183655_30	UniRef90_UPI001D00EC11	402.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0183655_30	568816.Acin_1836	415.0	0	Terminase RNaseH-like domain	N/A
Pfam	UHGV-0183655_30	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0183655_30	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0183655_30	PF03237,PF17289,MF_04146,TIGR01547,COG4373	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0183655_32	PF20075,TIGR03070,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0183655_33	PF13983	N/A	N/A	N/A	N/A
KOfam	UHGV-0183655_38	K03111	55.6	0.0000000000000015	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0183655_38	phrog_44	59.4	1e-16	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0183655_38	UniRef90_R6WGR4	254.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0183655_38	546268.NEISUBOT_05135	67.0	0.00000000000196	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0183655_38	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0183655_38	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0183655_38	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0183655_38	PF00436,MF_00984,TIGR00621,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0183655_39	K01160	59.3	1.1e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0183655_39	phrog_140	134.1	7e-40	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0183655_39	UniRef90_A0A316S9J1	146.0	1.5106e-42	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0183655_39	743719.PaelaDRAFT_5642	125.0	4.42e-35	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0183655_39	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0183655_39	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0183655_39	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0183655_43	phrog_2776	70.2	2.2e-20	N/A	unknown function
UniRef90	UHGV-0183655_43	UniRef90_A0A2S7ZCT0	103.0	4.72e-25	DNA repair protein MmcB-related protein	N/A
eggNOG-mapper	UHGV-0183655_43	266265.Bxe_A3083	53.1	0.00000294	N/A	N/A
Pfam	UHGV-0183655_43	PF06319	N/A	N/A	DNA repair protein MmcB-like	MmcB-like
structural_annotation	UHGV-0183655_43	PF06319,NF033832,COG5321	N/A	N/A	N/A	N/A
PHROG	UHGV-0183655_46	phrog_12728	153.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0183655_46	742765.HMPREF9457_02125	70.9	0.0000000000000307	N/A	N/A
PHROG	UHGV-0183655_47	phrog_7545	48.1	0.00000000000016	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0183655_47	UniRef90_A0A6N2TWZ2	182.0	0	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-0183655_47	935948.KE386495_gene1350	52.8	0.000000963	HNH endonuclease	N/A
Pfam	UHGV-0183655_47	PF13392	N/A	N/A	HNH endonuclease	HNH_3
KOfam	UHGV-0183655_48	K00558	263.0	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0183655_48	phrog_116	292.3	0	DNA methyltransferase	other
UniRef90	UHGV-0183655_48	UniRef90_A0A1Q6RAH0	749.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0183655_48	203119.Cthe_1728	392.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-0183655_48	MTase_II_00058	213.1	0	Type II methyltransferase	RM
Pfam	UHGV-0183655_48	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0183655_48	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0183655_48	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0183655_48	PF00145,MF_00786,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0183655_51	phrog_4880	145.8	2.8026e-43	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0183655_51	UniRef90_R6WTP4	454.0	0	N-terminal phage replisome organizer	N/A
eggNOG-mapper	UHGV-0183655_51	411470.RUMGNA_02197	129.0	5.88e-33	phage replisome	N/A
Pfam	UHGV-0183655_51	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-0183655_51	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
structural_annotation	UHGV-0183655_51	PF09681,TIGR01714,TIGR01446,COG3935	N/A	N/A	N/A	N/A
KOfam	UHGV-0183655_52	K07455	202.1	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0183655_52	phrog_148	211.5	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0183655_52	UniRef90_R6XVK6	363.0	0	Putative phage RecT family protein	N/A
eggNOG-mapper	UHGV-0183655_52	218284.CCDN010000001_gene901	206.0	0	RecT family	N/A
Pfam	UHGV-0183655_52	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0183655_52	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0183655_52	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0183655_52	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-0183655_53	K22299	41.6	0.000000000027	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
UniRef90	UHGV-0183655_53	UniRef90_R6WLK2	133.0	5.38e-39	Conserved domain protein	N/A
Pfam	UHGV-0183655_53	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0183655_53	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0183655_53	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0183655_54	phrog_434	327.2	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0183655_54	UniRef90_R6WGP6	624.0	0	Putative phage-type endonuclease	N/A
eggNOG-mapper	UHGV-0183655_54	706434.HMPREF9429_00551	358.0	0	YqaJ viral recombinase family protein	N/A
Pfam	UHGV-0183655_54	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0183655_54	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0183655_54	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0183655_54	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0183655_56	phrog_14367	53.9	0.0000000000000013	N/A	unknown function
UniRef90	UHGV-0183655_56	UniRef90_R6WTN1	160.0	0	Peptidoglycan-binding LysM	N/A
eggNOG-mapper	UHGV-0183655_56	397291.C804_02419	49.3	0.00000547	LysM domain	N/A
Pfam	UHGV-0183655_56	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0183655_56	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0183655_56	MF_02014,NF010723,COG1388	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0183655_57	NF041909	N/A	N/A	N/A	N/A
PHROG	UHGV-0183655_58	phrog_6058	77.3	1.1e-22	N/A	unknown function
UniRef90	UHGV-0183655_58	UniRef90_A0A0U9H7T0	60.1	0.000000000198	Modification methylase SinI	N/A
eggNOG-mapper	UHGV-0183655_58	1280689.AUJC01000011_gene1497	68.9	0.0000000000000119	N/A	N/A
structural_annotation	UHGV-0183655_58	PF12728,TIGR01764	N/A	N/A	N/A	N/A
NCBIFam	UHGV-0183655_64	TIGR01965.1	N/A	N/A	VCBS domain-containing protein	N/A
KOfam	UHGV-0183655_65	K18830	60.3	4.8e-17	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0183655_65	phrog_8	46.5	0.00000000000066	transcriptional regulator	transcription regulation
UniRef90	UHGV-0183655_65	UniRef90_R6X1Y8	185.0	0	Helix-turn-helix domain protein	N/A
eggNOG-mapper	UHGV-0183655_65	641107.CDLVIII_1309	88.6	4.34e-21	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0183655_65	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0183655_65	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0183655_65	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0183655_67	K14059	127.5	1.8e-37	int; integrase	N/A
PHROG	UHGV-0183655_67	phrog_1	142.2	4.69996e-42	integrase	integration and excision
UniRef90	UHGV-0183655_67	UniRef90_R6X1Y3	680.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0183655_67	1123250.KB908381_gene1631	332.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0183655_67	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0183655_67	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0183655_67	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0183655	Yes	46,450	45	100	1
UHGV-0081008	No	46,450	45	100	1