vOTU vOTU-070358

vOTU: vOTU-070358

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-070358
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → TANB77 → CAG-508 → CAG-269 → CAG-269 sp001916005
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00309 → vGENUS-11628 → vSUBGEN-16739 → vOTU-070358
Host lineage	Bacteria → Firmicutes_A → Clostridia → TANB77 → CAG-508
Host range breadth	Family
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0088292
Biosample ID	SAMEA3449366
Genome length (bp)	37,173 bps
CheckV completeness	99.14% (High-quality)
CDS count	72
CDS density	88.62%
tRNA count	3
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → TANB77 → CAG-508	Total connections	68	Host agreement	91.18
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → TANB77 → CAG-508 → CAG-269 → CAG-269 sp001916005	Total connections	10	Host agreement	90

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.14)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
NCBIFam	UHGV-0088292_1	TIGR01167.1	N/A	N/A	LPXTG cell wall anchor domain-containing protein	N/A
KOfam	UHGV-0088292_2	K14059	147.4	1.90577e-43	int; integrase	N/A
PHROG	UHGV-0088292_2	phrog_1	157.6	0	integrase	integration and excision
UniRef90	UHGV-0088292_2	UniRef90_R7F7D2	156.0	6.31e-40	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0088292_2	1161902.HMPREF0378_0144	147.0	1.17e-37	DNA integration	N/A
Pfam	UHGV-0088292_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0088292_2	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0088292_2	PF00589,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0088292_4	K01356	142.1	6.09985e-42	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0088292_4	phrog_4	97.8	1.6e-28	transcriptional repressor	transcription regulation
UniRef90	UHGV-0088292_4	UniRef90_R7F6V6	229.0	0	LexA repressor	N/A
eggNOG-mapper	UHGV-0088292_4	1203606.HMPREF1526_00998	132.0	1.28e-35	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0088292_4	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
Pfam	UHGV-0088292_4	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0088292_4	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0088292_4	PF01381,PF00717,MF_00015,NF041951,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0088292_5	864565.HMPREF0379_0737	46.6	0.00000787	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0088292_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0088292_5	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0088292_5	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0088292_6	PF12728,NF040990	N/A	N/A	N/A	N/A
PHROG	UHGV-0088292_10	phrog_253	110.0	2.1e-32	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0088292_10	UniRef90_A0A1C5VJZ4	104.0	2.66e-25	Siphovirus Gp157	N/A
eggNOG-mapper	UHGV-0088292_10	632292.Calhy_0748	81.3	3.52e-17	Siphovirus Gp157	N/A
Pfam	UHGV-0088292_10	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0088292_10	PF05565,NF002139	N/A	N/A	N/A	N/A
PHROG	UHGV-0088292_11	phrog_124	89.1	6.2e-26	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0088292_11	UniRef90_A0A7X7HFU7	301.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0088292_11	1329516.JPST01000033_gene2854	74.3	0.000000000000867	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	N/A
Pfam	UHGV-0088292_11	PF13479	N/A	N/A	AAA domain	AAA_24
COG	UHGV-0088292_11	COG0468	N/A	N/A	RecA/RadA recombinase	N/A
structural_annotation	UHGV-0088292_11	PF13479,MF_00348,TIGR01618,COG0468	N/A	N/A	N/A	N/A
UniRef90	UHGV-0088292_12	UniRef90_UPI001F3F3E5C	99.0	6.43e-23	recombination protein NinB	N/A
eggNOG-mapper	UHGV-0088292_12	445972.ANACOL_01825	79.7	3.09e-16	N/A	N/A
structural_annotation	UHGV-0088292_12	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0088292_13	phrog_7566	82.3	4.2e-24	N/A	unknown function
eggNOG-mapper	UHGV-0088292_13	97139.C824_05985	61.6	0.0000000000638	N/A	N/A
PHROG	UHGV-0088292_14	phrog_8489	266.6	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0088292_14	UniRef90_A0A174X4J3	232.0	0	Phage replication initiation protein	N/A
eggNOG-mapper	UHGV-0088292_14	1139219.I569_00860	209.0	0	DnaD domain protein	N/A
COG	UHGV-0088292_14	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0088292_14	PF09681,TIGR01714	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0088292_15	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0088292_16	phrog_4973	56.9	3.5e-16	N/A	unknown function
UniRef90	UHGV-0088292_16	UniRef90_A0A843HM15	84.0	1.48e-19	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0088292_16	640510.BC1001_5925	50.1	0.00000131	Helix-turn-helix domain	N/A
Pfam	UHGV-0088292_16	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0088292_16	PF14090,NF040939,COG5625	N/A	N/A	N/A	N/A
KOfam	UHGV-0088292_19	K01160	47.7	0.00000000000043	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0088292_19	phrog_1682	84.2	2e-24	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0088292_19	UniRef90_R7FGZ0	241.0	0	Gp63	N/A
eggNOG-mapper	UHGV-0088292_19	1120985.AUMI01000019_gene2247	105.0	9.59e-28	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-0088292_19	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0088292_19	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0088292_20	phrog_2044	101.7	3.3e-30	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0088292_20	1636205.A0A0E3TAK6_9CAUD	80.1	6.9e-19	N/A	N/A
structural_annotation	UHGV-0088292_20	MF_00337,NF010671,COG1722	N/A	N/A	N/A	N/A
PHROG	UHGV-0088292_21	phrog_1891	184.7	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0088292_21	UniRef90_A0A3D1PL14	336.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0088292_21	796940.HMPREF9628_00161	158.0	0	HNH endonuclease	N/A
Pfam	UHGV-0088292_21	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-0088292_21	PF13392	N/A	N/A	N/A	N/A
PHROG	UHGV-0088292_24	phrog_757	60.8	1.9e-17	DNA methyltransferase	other
eggNOG-mapper	UHGV-0088292_24	658655.HMPREF0988_00884	241.0	0	N/A	N/A
AcrCatalog	UHGV-0088292_24	cluster_47493	175.0	0	NA	N/A
PHROG	UHGV-0088292_33	phrog_6716	40.3	0.000000000036	N/A	unknown function
PHROG	UHGV-0088292_37	phrog_872	99.4	3.8e-29	N/A	unknown function
UniRef90	UHGV-0088292_37	UniRef90_A0A350S1T8	141.0	2.3696e-42	N/A	N/A
eggNOG-mapper	UHGV-0088292_37	1280692.AUJL01000027_gene2162	137.0	1.88993e-41	N/A	N/A
Pfam	UHGV-0088292_37	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0088292_37	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0088292_37	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-0088292_42	phrog_2538	88.6	6e-26	terminase small subunit	head and packaging
UniRef90	UHGV-0088292_42	UniRef90_A0A1Q6LGU3	221.0	0	HTH_Tnp_1_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0088292_42	1232430.CAVG010000114_gene1028	65.1	0.00000000000515	N/A	N/A
Pfam	UHGV-0088292_42	PF13022	N/A	N/A	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
structural_annotation	UHGV-0088292_42	PF13022,COG3677	N/A	N/A	N/A	N/A
PHROG	UHGV-0088292_43	phrog_2	62.6	9.9e-18	terminase large subunit	head and packaging
UniRef90	UHGV-0088292_43	UniRef90_A0A1Q6LGZ0	922.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0088292_43	552396.HMPREF0863_01628	536.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-0088292_43	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0088292_43	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0088292_45	phrog_533	236.5	0	portal protein	head and packaging
UniRef90	UHGV-0088292_45	UniRef90_R7FBF4	789.0	0	Putative phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0088292_45	1294142.CINTURNW_1024	472.0	0	N/A	N/A
structural_annotation	UHGV-0088292_45	PF05133,MF_04120,TIGR01542,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0088292_46	phrog_581	215.8	0	minor head protein	head and packaging
UniRef90	UHGV-0088292_46	UniRef90_UPI001D086335	362.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0088292_46	33035.JPJF01000093_gene2255	278.0	0	N/A	N/A
Pfam	UHGV-0088292_46	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0088292_46	COG5585	N/A	N/A	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	N/A
structural_annotation	UHGV-0088292_46	PF06152,PF03496,NF041404	N/A	N/A	N/A	N/A
PHROG	UHGV-0088292_48	phrog_4980	195.1	0	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0088292_48	UniRef90_A0A1Q6LGX4	270.0	0	PASTA domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0088292_48	1410674.JNKU01000005_gene1524	129.0	2.39e-34	Host cell surface-exposed lipoprotein	N/A
Pfam	UHGV-0088292_48	PF03793	N/A	N/A	PASTA domain	PASTA
Pfam	UHGV-0088292_48	PF07553	N/A	N/A	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
COG	UHGV-0088292_48	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-0088292_48	PF02631,MF_01114,NF001062,COG2137	N/A	N/A	N/A	N/A
PHROG	UHGV-0088292_50	phrog_422	282.2	0	major head protein	head and packaging
UniRef90	UHGV-0088292_50	UniRef90_R7FBE8	499.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0088292_50	663278.Ethha_1589	398.0	0	N/A	N/A
structural_annotation	UHGV-0088292_50	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0088292_52	phrog_541	67.1	2.7e-19	head-tail adaptor	connector
eggNOG-mapper	UHGV-0088292_52	552396.HMPREF0863_01637	67.4	0.000000000000927	N/A	N/A
PHROG	UHGV-0088292_53	phrog_8710	105.0	5.1e-31	N/A	unknown function
eggNOG-mapper	UHGV-0088292_53	1282664.H354_06676	79.7	8.88e-18	N/A	N/A
structural_annotation	UHGV-0088292_53	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0088292_54	phrog_556	41.2	0.000000000028	minor head protein	head and packaging
eggNOG-mapper	UHGV-0088292_54	585501.HMPREF6123_0831	90.1	1.28e-21	N/A	N/A
PHROG	UHGV-0088292_55	phrog_2595	71.0	1.5e-20	head-tail connector protein	connector
UniRef90	UHGV-0088292_55	UniRef90_UPI0016BCEC89	69.3	0.00000000000171	minor capsid protein	N/A
eggNOG-mapper	UHGV-0088292_55	1151292.QEW_2427	70.5	0.000000000000102	N/A	N/A
Pfam	UHGV-0088292_55	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0088292_55	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0088292_56	phrog_820	110.9	6.6e-33	major tail protein	tail
eggNOG-mapper	UHGV-0088292_56	33035.JPJF01000093_gene2246	204.0	0	N/A	N/A
structural_annotation	UHGV-0088292_56	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0088292_57	phrog_8300	69.0	7.1e-20	N/A	unknown function
eggNOG-mapper	UHGV-0088292_57	1123263.AUKY01000051_gene1073	78.2	1.93e-17	N/A	N/A
structural_annotation	UHGV-0088292_57	PF06896	N/A	N/A	N/A	N/A
UniRef90	UHGV-0088292_58	UniRef90_UPI0018CC7D50	77.0	1.78e-16	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0088292_58	394503.Ccel_3036	78.2	1.49e-17	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0088292_58	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0088292_58	PF06854	N/A	N/A	N/A	N/A
UniRef90	UHGV-0088292_60	UniRef90_R7F982	59.7	0.0000000000655	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0088292_60	573061.Clocel_0220	56.6	0.000000000196	Mu-like prophage protein Com	N/A
structural_annotation	UHGV-0088292_60	PF10122,COG4416	N/A	N/A	N/A	N/A
PHROG	UHGV-0088292_61	phrog_1535	282.5	0	tail length tape measure protein	tail
UniRef90	UHGV-0088292_61	UniRef90_A0A1C5PIN9	425.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0088292_61	33035.JPJF01000093_gene2243	352.0	0	phage tail tape measure protein	N/A
COG	UHGV-0088292_61	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0088292_61	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0088292_62	phrog_1194	111.3	5.3e-33	N/A	unknown function
UniRef90	UHGV-0088292_62	UniRef90_R7F8R7	189.0	0	Putative phage protein	N/A
eggNOG-mapper	UHGV-0088292_62	1280692.AUJL01000027_gene2149	115.0	8.45e-32	N/A	N/A
Pfam	UHGV-0088292_62	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0088292_62	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0088292_63	phrog_6616	65.1	6e-19	tail protein	tail
eggNOG-mapper	UHGV-0088292_63	1449343.JQLQ01000002_gene1509	58.2	0.000000315	N/A	N/A
COG	UHGV-0088292_63	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0088292_64	phrog_5555	90.6	9.6e-27	tail protein	tail
UniRef90	UHGV-0088292_64	UniRef90_R7F857	536.0	0	Phage minor structural protein	N/A
eggNOG-mapper	UHGV-0088292_64	272562.CA_C0063	112.0	1.4e-23	Prophage endopeptidase tail	N/A
COG	UHGV-0088292_64	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0088292_66	PF18463,TIGR02215	N/A	N/A	N/A	N/A
PHROG	UHGV-0088292_68	phrog_937	40.5	0.000000000053	hemolysin	other
structural_annotation	UHGV-0088292_69	PF16938	N/A	N/A	N/A	N/A
KOfam	UHGV-0088292_70	K01447	117.6	1.4e-34	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0088292_70	phrog_9611	147.7	7.28675e-44	endolysin	lysis
UniRef90	UHGV-0088292_70	UniRef90_R6H5X6	472.0	0	N-acetylmuramyl-L-alanine amidase negative regulator of AmpC AmpD	N/A
eggNOG-mapper	UHGV-0088292_70	642492.Clole_0841	207.0	0	n-acetylmuramoyl-l-alanine amidase	N/A
Pfam	UHGV-0088292_70	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0088292_70	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0088292_70	PF01510,PF20780,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
UniRef90	UHGV-0088292_71	UniRef90_R6I264	116.0	7.36e-33	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0088292_71	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0088292_71	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0088292_71	PF01381,NF010465,COG1476	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0088292	Yes	37,173	28	99	1
UHGV-1536319	No	33,514	28	89	1
UHGV-1278206	No	10,944	29	29	1