vOTU vOTU-070525

vOTU: vOTU-070525

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-070525
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00316 → vGENUS-02897 → vSUBGEN-18340 → vOTU-070525
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2032555
Biosample ID	SAMEA2737777
Genome length (bp)	34,236 bps
CheckV completeness	92.04% (High-quality)
CDS count	48
CDS density	86.55%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae	Total connections	92	Host agreement	95.65
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis	Total connections	558	Host agreement	98.75

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 92.04)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-2032555_1	phrog_28749	178.8	0	N/A	unknown function
UniRef90	UHGV-2032555_1	UniRef90_UPI001A9ABB20	158.0	0	N/A	N/A
eggNOG-mapper	UHGV-2032555_1	657322.FPR_24750	160.0	0	N/A	N/A
Pfam	UHGV-2032555_1	PF19537	N/A	N/A	N/A	DUF6061
structural_annotation	UHGV-2032555_1	PF19537	N/A	N/A	N/A	N/A
KOfam	UHGV-2032555_2	K06926	201.3	0	N/A	N/A
PHROG	UHGV-2032555_2	phrog_5836	154.1	1.4013e-45	N/A	unknown function
UniRef90	UHGV-2032555_2	UniRef90_UPI0012DD1C78	909.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-2032555_2	138119.DSY4809	430.0	0	AAA domain, putative AbiEii toxin, Type IV TA system	N/A
PADLOC	UHGV-2032555_2	AbiLi-1	161.9	0	AbiLi	Abi
Pfam	UHGV-2032555_2	PF13304	N/A	N/A	AAA domain, putative AbiEii toxin, Type IV TA system	AAA_21
COG	UHGV-2032555_2	COG1106	N/A	N/A	ATPase/GTPase, AAA15 family	N/A
structural_annotation	UHGV-2032555_2	PF13304,MF_00365,NF041760,COG4637	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2032555_3	138119.DSY4808	220.0	0	N/A	N/A
AcrCatalog	UHGV-2032555_3	cluster_3626	126.0	5.37e-39	NA	N/A
UniRef90	UHGV-2032555_4	UniRef90_A0A329TP18	60.8	0.000000000132	Transposase	N/A
eggNOG-mapper	UHGV-2032555_4	411483.FAEPRAA2165_00409	129.0	5.64e-39	N/A	N/A
PHROG	UHGV-2032555_5	phrog_581	340.2	0	minor head protein	head and packaging
UniRef90	UHGV-2032555_5	UniRef90_UPI000C7C1FAA	567.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-2032555_5	748224.HMPREF9436_03339	461.0	0	N/A	N/A
Pfam	UHGV-2032555_5	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-2032555_5	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-2032555_6	phrog_533	357.5	0	portal protein	head and packaging
UniRef90	UHGV-2032555_6	UniRef90_A0A367GFE3	914.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-2032555_6	663278.Ethha_0090	572.0	0	N/A	N/A
Pfam	UHGV-2032555_6	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-2032555_6	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-2032555_7	K06909	133.6	2e-39	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-2032555_7	phrog_2	158.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-2032555_7	UniRef90_A0A367GH60	867.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-2032555_7	1120746.CCNL01000014_gene2093	540.0	0	DNA packaging	N/A
Pfam	UHGV-2032555_7	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-2032555_7	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-2032555_7	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-2032555_7	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-2032555_7	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-2032555_8	phrog_606	89.4	3.7e-26	terminase small subunit	head and packaging
UniRef90	UHGV-2032555_8	UniRef90_UPI00195648BB	179.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-2032555_8	397290.C810_05185	158.0	0	DNA-packaging protein gp3	N/A
Pfam	UHGV-2032555_8	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-2032555_8	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-2032555_9	phrog_9151	123.7	8.3e-37	HicB-like antitoxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-2032555_9	UniRef90_A0A2A7B0L5	176.0	0	Type II toxin-antitoxin system HicB family antitoxin	N/A
eggNOG-mapper	UHGV-2032555_9	1280663.ATVR01000054_gene3014	129.0	3.66e-36	HicB family	N/A
Pfam	UHGV-2032555_9	PF05534	N/A	N/A	HicB family	HicB
COG	UHGV-2032555_9	COG4226	N/A	N/A	Predicted nuclease of the RNAse H fold, HicB family	N/A
eggNOG-mapper	UHGV-2032555_10	1297617.JPJD01000059_gene2640	96.7	2.64e-24	N/A	N/A
KOfam	UHGV-2032555_15	K01160	41.9	0.000000000024	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-2032555_15	phrog_140	90.9	1.5e-26	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2032555_15	UniRef90_A0A367GHC7	286.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-2032555_15	394503.Ccel_3302	157.0	0	endodeoxyribonuclease RusA	N/A
Pfam	UHGV-2032555_15	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-2032555_15	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-2032555_15	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-2032555_16	K07505	369.8	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-2032555_16	phrog_2597	1086.0	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2032555_16	UniRef90_A0A367GFF7	1532.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-2032555_16	999413.HMPREF1094_00232	869.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-2032555_16	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-2032555_16	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-2032555_16	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-2032555_16	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-2032555_17	K17677	349.0	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-2032555_17	phrog_16	270.7	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2032555_17	UniRef90_A0A367GH68	1079.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-2032555_17	610130.Closa_1369	759.0	0	DEAD-like helicases superfamily	N/A
PADLOC	UHGV-2032555_17	mREase_IV_00005	138.6	5.19994e-41	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-2032555_17	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-2032555_17	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-2032555_17	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-2032555_17	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-2032555_18	phrog_2698	189.0	0	N/A	unknown function
UniRef90	UHGV-2032555_18	UniRef90_A0A367GFE7	344.0	0	N/A	N/A
eggNOG-mapper	UHGV-2032555_18	294382.Q5YA95_9CAUD	139.0	2.1e-39	N/A	N/A
structural_annotation	UHGV-2032555_18	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-2032555_19	phrog_124	226.8	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2032555_19	UniRef90_UPI00122C2B12	516.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-2032555_19	1273103.NM10_06861	356.0	0	AAA domain	N/A
Pfam	UHGV-2032555_19	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-2032555_19	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-2032555_20	K03546	48.7	0.000000000000067	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-2032555_20	phrog_1499	458.2	0	N/A	unknown function
UniRef90	UHGV-2032555_20	UniRef90_A0A367GHQ5	814.0	0	Chromosome segregation protein SMC	N/A
eggNOG-mapper	UHGV-2032555_20	1235798.C817_04766	508.0	0	AAA ATPase domain	N/A
Pfam	UHGV-2032555_20	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-2032555_20	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-2032555_20	PF11398,MF_00365,TIGR00634,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-2032555_21	phrog_1733	57.8	7.4e-17	N/A	unknown function
UniRef90	UHGV-2032555_21	UniRef90_UPI00196846D9	181.0	0	cell envelope integrity protein TolA	N/A
eggNOG-mapper	UHGV-2032555_21	665956.HMPREF1032_03597	210.0	0	DNA binding	N/A
COG	UHGV-2032555_21	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-2032555_21	PF03677	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2032555_23	PF12957	N/A	N/A	N/A	N/A
UniRef90	UHGV-2032555_25	UniRef90_A0A367GHD7	155.0	0	HTH_17 domain-containing protein	N/A
Pfam	UHGV-2032555_25	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
PHROG	UHGV-2032555_26	phrog_4583	44.1	0.0000000000028	transcriptional repressor	transcription regulation
UniRef90	UHGV-2032555_26	UniRef90_UPI000A0213FB	87.0	5.89e-21	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-2032555_26	1680.BADO_1596	47.0	0.00000486	BetR domain	N/A
Pfam	UHGV-2032555_26	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-2032555_26	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2032555_27	PF00227,MF_02113_A,TIGR03634,COG0638	N/A	N/A	N/A	N/A
KOfam	UHGV-2032555_30	K22300	40.5	0.000000000047	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-2032555_30	phrog_2439	42.6	0.000000000006	transcriptional regulator	transcription regulation
UniRef90	UHGV-2032555_30	UniRef90_A0A6N2UL50	97.4	5.12e-25	Helix-turn-helix	N/A
eggNOG-mapper	UHGV-2032555_30	1504823.CCMM01000008_gene1079	63.5	0.00000000000149	sequence-specific DNA binding	N/A
Pfam	UHGV-2032555_30	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2032555_30	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2032555_30	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-2032555_31	K22300	54.4	0.0000000000000027	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-2032555_31	phrog_2967	64.4	1.6e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-2032555_31	UniRef90_A0A412UNH6	81.3	1.88e-17	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-2032555_31	911104.AEKT01000001_gene15	68.9	0.000000000000204	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-2032555_31	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2032555_31	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-2032555_31	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-2032555_32	phrog_87	45.3	0.0000000000011	metallo-protease	other
UniRef90	UHGV-2032555_32	UniRef90_UPI001C3AA0FC	134.0	1.06e-37	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-2032555_32	663278.Ethha_2376	91.7	8.82e-22	N/A	N/A
structural_annotation	UHGV-2032555_32	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-2032555_33	K19370	42.7	0.0000000000054	DNAJC22; DnaJ homolog subfamily C member 22	N/A
PHROG	UHGV-2032555_33	phrog_10292	60.6	1.6e-18	N/A	unknown function
UniRef90	UHGV-2032555_33	UniRef90_UPI001916763D	121.0	1.4e-32	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-2032555_33	665956.HMPREF1032_00562	108.0	3.78e-28	TM2 domain	N/A
Pfam	UHGV-2032555_33	PF13248	N/A	N/A	zinc-ribbon domain	zf-ribbon_3
Pfam	UHGV-2032555_33	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-2032555_33	COG2314	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2032555_33	PF05154,PF12773,MF_00788,NF003161	N/A	N/A	N/A	N/A
KOfam	UHGV-2032555_34	K14059	190.7	0	int; integrase	N/A
PHROG	UHGV-2032555_34	phrog_1	196.8	0	integrase	integration and excision
UniRef90	UHGV-2032555_34	UniRef90_UPI00195B6EEA	455.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-2032555_34	1235797.C816_00779	175.0	0	Phage integrase family	N/A
Pfam	UHGV-2032555_34	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-2032555_34	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2032555_34	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-2032555_34	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-2032555_35	phrog_30113	274.6	0	N/A	unknown function
UniRef90	UHGV-2032555_35	UniRef90_UPI000772F28C	281.0	0	N/A	N/A
eggNOG-mapper	UHGV-2032555_35	585501.HMPREF6123_0869	253.0	0	N/A	N/A
Pfam	UHGV-2032555_35	PF12686	N/A	N/A	N/A	DUF3800
structural_annotation	UHGV-2032555_35	PF01351,MF_00052_A,TIGR00729,COG1039	N/A	N/A	N/A	N/A
PHROG	UHGV-2032555_36	phrog_1129	60.8	1.8e-17	holin	lysis
UniRef90	UHGV-2032555_36	UniRef90_A0A367FT42	166.0	0	Enolase	N/A
eggNOG-mapper	UHGV-2032555_36	693746.OBV_13280	112.0	2.5e-31	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-2032555_36	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-2032555_36	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-2032555_37	phrog_1863	80.1	1.4e-23	N/A	unknown function
eggNOG-mapper	UHGV-2032555_37	665956.HMPREF1032_03922	105.0	1.27e-28	N/A	N/A
KOfam	UHGV-2032555_38	K19304	117.3	1.6e-34	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-2032555_38	phrog_10030	95.3	2.4e-28	tail length tape measure protein	tail
UniRef90	UHGV-2032555_38	UniRef90_A0A3D1PRD1	407.0	0	Peptidase_M23 domain-containing protein	N/A
eggNOG-mapper	UHGV-2032555_38	1120998.AUFC01000026_gene789	102.0	1.95e-22	G5	N/A
Pfam	UHGV-2032555_38	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-2032555_38	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-2032555_38	PF01551,NF040883	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2032555_40	476272.RUMHYD_00002	89.4	0.00000000000000205	N/A	N/A
KOfam	UHGV-2032555_42	K07741	69.7	9.4e-20	antB; anti-repressor protein	N/A
PHROG	UHGV-2032555_42	phrog_130	236.6	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-2032555_42	UniRef90_A0A7I8D1H8	334.0	0	Putative antirepressor - phage associated	N/A
eggNOG-mapper	UHGV-2032555_42	1232449.BAHV02000010_gene2739	275.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-2032555_42	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-2032555_42	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-2032555_42	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-2032555_42	PF03374,PF02498,TIGR02681,COG3645	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2032555_44	PF09454,MF_00644	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2032555_46	665956.HMPREF1032_00120	99.4	4.59e-27	N/A	N/A
structural_annotation	UHGV-2032555_46	PF01402,COG4710	N/A	N/A	N/A	N/A
UniRef90	UHGV-2032555_47	UniRef90_A0A7M1Q4S5	61.2	0.0000000000326	Ribbon-helix-helix protein, CopG family	N/A
eggNOG-mapper	UHGV-2032555_47	663952.SDD27957_09060	52.0	0.0000000242	N/A	N/A
structural_annotation	UHGV-2032555_47	PF12651,NF041793,COG4710	N/A	N/A	N/A	N/A
KOfam	UHGV-2032555_48	K07727	52.6	0.000000000000011	K07727; putative transcriptional regulator	N/A
UniRef90	UHGV-2032555_48	UniRef90_A0A2V2FGW5	107.0	2.88e-29	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-2032555_48	1378168.N510_01451	84.0	1.17e-20	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-2032555_48	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-2032555_48	PF13443,NF000090,COG3655	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-2032555	Yes	34,236	55	92	1