vOTU vOTU-070539

vOTU: vOTU-070539

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-070539
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00060 → vGENUS-00089 → vSUBGEN-26079 → vOTU-070539
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170 → CAG-170 sp000432135
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1399328
Biosample ID	SAMN00065654
Genome length (bp)	38,061 bps
CheckV completeness	90.89% (High-quality)
CDS count	51
CDS density	94.12%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170 → CAG-170 sp000432135	Total connections	188	Host agreement	90.43
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170	Total connections	29	Host agreement	93.1

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 90.89)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1399328_1	phrog_22978	124.8	2.49431e-43	N/A	unknown function
eggNOG-mapper	UHGV-1399328_1	1408437.JNJN01000039_gene389	492.0	0	heme binding	N/A
Pfam	UHGV-1399328_1	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
COG	UHGV-1399328_1	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
UniRef90	UHGV-1399328_2	UniRef90_R5DCX9	189.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1399328_2	1410650.JHWL01000003_gene2815	137.0	7.19e-34	N/A	N/A
PHROG	UHGV-1399328_3	phrog_12105	121.9	3.5e-36	N/A	unknown function
eggNOG-mapper	UHGV-1399328_3	1226322.HMPREF1545_03850	59.7	0.00000000112	N/A	N/A
PHROG	UHGV-1399328_5	phrog_1357	210.8	0	major head protein	head and packaging
UniRef90	UHGV-1399328_5	UniRef90_A0A2V2CFL5	387.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-1399328_5	1410650.JHWL01000003_gene2830	272.0	0	N/A	N/A
Pfam	UHGV-1399328_5	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-1399328_5	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1399328_5	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1399328_6	phrog_13908	148.9	3.36312e-44	N/A	unknown function
eggNOG-mapper	UHGV-1399328_6	1410650.JHWL01000003_gene2831	105.0	9.67e-24	N/A	N/A
PHROG	UHGV-1399328_7	phrog_156	301.9	0	portal protein	head and packaging
eggNOG-mapper	UHGV-1399328_7	1410650.JHWL01000003_gene2833	534.0	0	N/A	N/A
structural_annotation	UHGV-1399328_7	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1399328_9	phrog_37329	48.3	0.00000000000011	N/A	unknown function
Pfam	UHGV-1399328_9	PF00041	N/A	N/A	Fibronectin type III domain	fn3
COG	UHGV-1399328_9	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
structural_annotation	UHGV-1399328_9	PF17744,PF16655,MF_01905,NF038116,COG3979,COG2033	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1399328_10	537007.BLAHAN_05255	59.3	0.00000131	N/A	N/A
PHROG	UHGV-1399328_11	phrog_511	243.5	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-1399328_11	1410650.JHWL01000003_gene2827	324.0	0	N/A	N/A
structural_annotation	UHGV-1399328_11	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
KOfam	UHGV-1399328_12	K06909	146.6	2.29813e-43	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1399328_12	phrog_979	134.6	4.39994e-41	terminase large subunit	head and packaging
UniRef90	UHGV-1399328_12	UniRef90_A0A810Q5R0	644.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1399328_12	1410650.JHWL01000003_gene2834	639.0	0	N/A	N/A
Pfam	UHGV-1399328_12	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1399328_12	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1399328_12	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1399328_13	phrog_606	72.2	8.1e-21	terminase small subunit	head and packaging
UniRef90	UHGV-1399328_13	UniRef90_UPI001F487344	125.0	3.92e-34	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1399328_13	397290.C810_05185	127.0	2.82e-35	DNA-packaging protein gp3	N/A
Pfam	UHGV-1399328_13	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-1399328_13	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-1399328_15	phrog_3584	112.9	2.7e-33	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1399328_15	537013.CLOSTMETH_02141	68.6	0.0000000000239	N/A	N/A
structural_annotation	UHGV-1399328_15	PF21578,MF_00360	N/A	N/A	N/A	N/A
PHROG	UHGV-1399328_17	phrog_374	54.5	0.0000000000000026	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1399328_17	411467.BACCAP_02633	67.4	0.00000000000684	N/A	N/A
PHROG	UHGV-1399328_19	phrog_190	96.9	2.2e-28	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1399328_19	UniRef90_UPI0006C2AC63	129.0	1.62e-35	N/A	N/A
eggNOG-mapper	UHGV-1399328_19	693746.OBV_25250	114.0	3.21e-30	N/A	N/A
Pfam	UHGV-1399328_19	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1399328_19	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-1399328_22	phrog_599	40.3	0.000000000051	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1399328_22	UniRef90_Q5YA82	97.4	1.22e-24	28	N/A
dbAPIS	UHGV-1399328_22	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
PHROG	UHGV-1399328_23	phrog_38832	47.2	1.1e-17	N/A	unknown function
eggNOG-mapper	UHGV-1399328_23	665956.HMPREF1032_03087	100.0	3.73e-25	N/A	N/A
PHROG	UHGV-1399328_24	phrog_355	78.0	1.2e-22	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1399328_24	UniRef90_A0A413FXK8	118.0	9.99e-33	N/A	N/A
eggNOG-mapper	UHGV-1399328_24	573061.Clocel_3558	89.7	4.36e-22	N/A	N/A
Pfam	UHGV-1399328_24	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-1399328_24	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-1399328_24	PF14359,MF_03036,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-1399328_25	phrog_3136	133.6	6.6e-40	N/A	unknown function
UniRef90	UHGV-1399328_25	UniRef90_A0A3D0HBD2	114.0	2.26e-29	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1399328_25	642492.Clole_1416	70.9	0.0000000000000884	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
Pfam	UHGV-1399328_25	PF04266	N/A	N/A	ASCH domain	ASCH
COG	UHGV-1399328_25	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1399328_25	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-1399328_26	phrog_15609	229.6	0	N/A	unknown function
UniRef90	UHGV-1399328_26	UniRef90_UPI001246A313	86.3	0.00000000000000208	N/A	N/A
eggNOG-mapper	UHGV-1399328_26	1501230.ET33_21155	123.0	9.67e-30	N/A	N/A
Pfam	UHGV-1399328_26	PF11300	N/A	N/A	N/A	DUF3102
COG	UHGV-1399328_26	COG0188	N/A	N/A	DNA gyrase/topoisomerase IV, subunit A	N/A
structural_annotation	UHGV-1399328_26	PF11300,PF07321,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-1399328_27	phrog_8470	258.8	0	N/A	unknown function
UniRef90	UHGV-1399328_27	UniRef90_UPI0002D9F0BD	306.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-1399328_27	1007096.BAGW01000031_gene117	306.0	0	PcfJ-like protein	N/A
Pfam	UHGV-1399328_27	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-1399328_27	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-1399328_28	phrog_36399	50.4	0.000000000000044	N/A	unknown function
structural_annotation	UHGV-1399328_31	PF05082	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1399328_32	NF041247	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1399328_34	PF10548	N/A	N/A	N/A	N/A
KOfam	UHGV-1399328_37	K22300	50.4	0.000000000000049	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1399328_37	phrog_2967	44.1	0.0000000000037	transcriptional regulator	transcription regulation
UniRef90	UHGV-1399328_37	UniRef90_A0A1Q6RKG1	110.0	7.23e-29	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1399328_37	748224.HMPREF9436_01444	103.0	1.91e-26	N/A	N/A
Pfam	UHGV-1399328_37	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1399328_37	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1399328_37	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1399328_39	246194.CHY_1698	55.1	0.00000779	Staphylococcal nuclease homologue	N/A
Pfam	UHGV-1399328_39	PF02805	N/A	N/A	Metal binding domain of Ada	Ada_Zn_binding
COG	UHGV-1399328_39	COG1525	N/A	N/A	Endonuclease YncB, thermonuclease family	N/A
Pfam	UHGV-1399328_41	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1399328_41	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1399328_42	K14059	208.2	0	int; integrase	N/A
PHROG	UHGV-1399328_42	phrog_1	201.3	0	integrase	integration and excision
UniRef90	UHGV-1399328_42	UniRef90_A0A212JT52	254.0	0	Putative Integrase family protein	N/A
eggNOG-mapper	UHGV-1399328_42	1507.HMPREF0262_00307	199.0	0	Phage integrase family	N/A
Pfam	UHGV-1399328_42	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1399328_42	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1399328_42	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1399328_42	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1399328_43	UniRef90_A0A8F0WD75	74.7	0.000000000000116	RNA polymerase sigma factor/Ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-1399328_43	1378168.N510_03079	67.4	0.0000000000278	N/A	N/A
structural_annotation	UHGV-1399328_44	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1399328_45	phrog_16490	54.0	0.0000000000000037	N/A	unknown function
eggNOG-mapper	UHGV-1399328_45	641112.ACOK01000103_gene525	54.3	0.00000208	N/A	N/A
UniRef90	UHGV-1399328_48	UniRef90_UPI00164EA432	223.0	0	SH3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1399328_48	525254.HMPREF0072_1273	218.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
COG	UHGV-1399328_48	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-1399328_48	NF033743	N/A	N/A	N/A	N/A
PHROG	UHGV-1399328_49	phrog_13256	64.8	7.6e-19	N/A	unknown function
eggNOG-mapper	UHGV-1399328_49	428125.CLOLEP_01907	73.9	1.29e-16	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1399328	Yes	38,061	59	91	1
UHGV-1399515	No	36,359	59	87	1
UHGV-0205253	No	24,968	59	60	1