vOTU vOTU-070809

vOTU: vOTU-070809

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-070809
Number of genomes	5
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → RUG115 → RUG115 sp900066395
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-01208 → vGENUS-01172 → vSUBGEN-04373 → vOTU-070809
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae
Host range breadth	Family
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0038230
Biosample ID	N/A
Genome length (bp)	38,960 bps
CheckV completeness	97.58% (High-quality)
CDS count	48
CDS density	96.84%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae	Total connections	388	Host agreement	99.23
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → RUG115 → RUG115 sp900066395	Total connections	73	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 97.58)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0038230_1	K14059	120.7	1.9e-35	int; integrase	N/A
PHROG	UHGV-0038230_1	phrog_1	130.4	1.8e-38	integrase	integration and excision
UniRef90	UHGV-0038230_1	UniRef90_A0A416Z2R8	748.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0038230_1	585394.RHOM_14030	413.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0038230_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0038230_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0038230_1	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0038230_2	UniRef90_A0A3R6Q4V1	387.0	0	YHYH domain-containing protein	N/A
eggNOG-mapper	UHGV-0038230_2	756499.Desde_3141	63.9	0.000000002	Bacterial Ig-like domain 2	N/A
NCBIFam	UHGV-0038230_2	NF033223.2	N/A	N/A	YHYH domain-containing protein	N/A
COG	UHGV-0038230_2	COG5492	N/A	N/A	N/A	N/A
UniRef90	UHGV-0038230_3	UniRef90_A0A3R6QMJ7	96.3	2.75e-25	XRE family transcriptional regulator	N/A
Pfam	UHGV-0038230_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0038230_3	COG3620	N/A	N/A	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	N/A
structural_annotation	UHGV-0038230_3	PF01381,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0038230_5	K18830	71.5	1.7e-20	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0038230_5	phrog_2967	59.2	7.6e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0038230_5	UniRef90_A0A3R6UL37	228.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0038230_5	445972.ANACOL_03315	124.0	2.45e-35	N/A	N/A
Pfam	UHGV-0038230_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0038230_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0038230_5	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0038230_8	phrog_6058	43.1	0.0000000000048	N/A	unknown function
UniRef90	UHGV-0038230_8	UniRef90_A0A416Z3U8	131.0	9.46e-39	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0038230_8	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
PHROG	UHGV-0038230_12	phrog_3584	159.8	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0038230_12	1235800.C819_02258	271.0	0	N/A	N/A
structural_annotation	UHGV-0038230_12	PF21578,NF041486	N/A	N/A	N/A	N/A
KOfam	UHGV-0038230_13	K03469	60.8	3.1e-17	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0038230_13	phrog_531	41.4	0.000000000012	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0038230_13	UniRef90_A0A416Z2U3	288.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0038230_13	1163389.OOM_1312	72.4	0.0000000000000503	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-0038230_13	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0038230_13	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0038230_13	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-0038230_14	phrog_7370	47.6	0.000000000000079	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0038230_14	UniRef90_UPI00164A90AD	136.0	2.84e-39	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0038230_14	1235800.C819_02254	106.0	3.6e-28	HNH nucleases	N/A
PHROG	UHGV-0038230_15	phrog_24368	73.2	3.6e-21	N/A	unknown function
eggNOG-mapper	UHGV-0038230_15	411902.CLOBOL_03886	59.3	0.00000000244	N/A	N/A
PHROG	UHGV-0038230_16	phrog_20593	42.2	0.000000000012	N/A	unknown function
UniRef90	UHGV-0038230_16	UniRef90_A0A3R6QEJ7	83.6	4.78e-18	N/A	N/A
eggNOG-mapper	UHGV-0038230_16	658655.HMPREF0988_00866	88.2	3.66e-21	N/A	N/A
PHROG	UHGV-0038230_17	phrog_874	164.9	0	N/A	unknown function
UniRef90	UHGV-0038230_17	UniRef90_UPI0018F57B3A	260.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0038230_17	411468.CLOSCI_00298	184.0	0	N/A	N/A
structural_annotation	UHGV-0038230_17	PF04266,MF_00684,NF003443,COG4405	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0038230_21	483218.BACPEC_01167	106.0	6.62e-27	N/A	N/A
PHROG	UHGV-0038230_22	phrog_4433	88.7	9.8e-29	N/A	unknown function
eggNOG-mapper	UHGV-0038230_22	742733.HMPREF9469_00220	155.0	1.4013e-45	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0038230_22	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0038230_22	PF12120,NF000318	N/A	N/A	N/A	N/A
PHROG	UHGV-0038230_23	phrog_8470	213.4	0	N/A	unknown function
UniRef90	UHGV-0038230_23	UniRef90_UPI000E4BB21C	1455.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0038230_23	742733.HMPREF9469_00219	338.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0038230_23	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0038230_23	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0038230_24	phrog_15077	112.0	9.9e-33	N/A	unknown function
UniRef90	UHGV-0038230_24	UniRef90_A0A3A6HZA9	166.0	2.01787e-43	N/A	N/A
eggNOG-mapper	UHGV-0038230_24	1280698.AUJS01000007_gene1019	186.0	0	N/A	N/A
structural_annotation	UHGV-0038230_24	PF11300,NF038070	N/A	N/A	N/A	N/A
UniRef90	UHGV-0038230_27	UniRef90_UPI0011110A17	68.2	0.0000000000153	N/A	N/A
KOfam	UHGV-0038230_28	K03698	40.7	0.00000000003	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	N/A
PHROG	UHGV-0038230_28	phrog_28876	88.9	4.8e-26	metal-dependent phosphohydrolase	other
UniRef90	UHGV-0038230_28	UniRef90_A0A843HIF4	185.0	0	HDIG domain-containing protein	N/A
eggNOG-mapper	UHGV-0038230_28	1235800.C819_00499	207.0	0	metal-dependent phosphohydrolase, HD sub domain	N/A
COG	UHGV-0038230_28	COG3481	N/A	N/A	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	N/A
structural_annotation	UHGV-0038230_28	PF21447,MF_01427,NF010007,COG3481	N/A	N/A	N/A	N/A
KOfam	UHGV-0038230_32	K07474	74.4	3e-21	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0038230_32	phrog_2606	137.0	1.4013e-45	terminase small subunit	head and packaging
UniRef90	UHGV-0038230_32	UniRef90_A0A3A9GB54	158.0	8.54792e-44	Phage portal protein	N/A
eggNOG-mapper	UHGV-0038230_32	1415774.U728_838	124.0	2.44e-31	terminase, small subunit	N/A
Pfam	UHGV-0038230_32	PF06056	N/A	N/A	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
Pfam	UHGV-0038230_32	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0038230_32	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0038230_32	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0038230_33	K06909	100.1	2.6e-29	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0038230_33	phrog_979	213.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0038230_33	UniRef90_A0A2V2D4K5	995.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-0038230_33	411483.FAEPRAA2165_01044	633.0	0	Terminase-like family	N/A
Pfam	UHGV-0038230_33	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0038230_33	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0038230_33	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0038230_34	phrog_156	342.0	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0038230_34	748224.HMPREF9436_02547	509.0	0	N/A	N/A
structural_annotation	UHGV-0038230_34	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0038230_35	K07584	73.4	3.8e-21	N/A	N/A
PHROG	UHGV-0038230_35	phrog_4478	68.5	7.2e-20	peptidase	other
UniRef90	UHGV-0038230_35	UniRef90_A0A416Z2U9	227.0	0	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0038230_35	1121914.AUDW01000025_gene171	53.1	0.000000192	Cysteine protease Prp	N/A
Pfam	UHGV-0038230_35	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0038230_35	COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0038230_36	phrog_13908	226.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0038230_36	1321782.HMPREF1986_00346	79.7	0.0000000000000304	N/A	N/A
PHROG	UHGV-0038230_37	phrog_1357	260.8	0	major head protein	head and packaging
UniRef90	UHGV-0038230_37	UniRef90_A0A3R6PQZ4	607.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0038230_37	411483.FAEPRAA2165_01040	384.0	0	N/A	N/A
Pfam	UHGV-0038230_37	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0038230_37	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0038230_37	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0038230_38	phrog_15239	53.1	0.0000000000000045	N/A	unknown function
PHROG	UHGV-0038230_39	phrog_12105	131.3	4.1e-39	N/A	unknown function
eggNOG-mapper	UHGV-0038230_39	1226322.HMPREF1545_03850	70.5	0.0000000000000662	N/A	N/A
PHROG	UHGV-0038230_40	phrog_511	241.0	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0038230_40	1321782.HMPREF1986_00351	327.0	0	N/A	N/A
structural_annotation	UHGV-0038230_40	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0038230_42	phrog_21397	44.9	0.0000000000014	N/A	unknown function
eggNOG-mapper	UHGV-0038230_42	1410650.JHWL01000003_gene2815	125.0	4.39e-29	N/A	N/A
PHROG	UHGV-0038230_43	phrog_22978	557.5	0	N/A	unknown function
UniRef90	UHGV-0038230_43	UniRef90_R5G452	577.0	0	PBECR5 domain-containing protein	N/A
eggNOG-mapper	UHGV-0038230_43	1410650.JHWL01000003_gene2814	645.0	0	N/A	N/A
Pfam	UHGV-0038230_43	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
PHROG	UHGV-0038230_44	phrog_3639	49.1	0.000000000000063	minor tail protein	tail
UniRef90	UHGV-0038230_44	UniRef90_A0A3R6TVQ8	432.0	0	N/A	N/A
eggNOG-mapper	UHGV-0038230_44	1160721.RBI_I01572	68.9	0.0000000000927	N/A	N/A
Pfam	UHGV-0038230_44	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
structural_annotation	UHGV-0038230_44	PF10651,NF032891,COG2372	N/A	N/A	N/A	N/A
PHROG	UHGV-0038230_45	phrog_1980	44.9	0.0000000000013	tail fiber protein	tail
UniRef90	UHGV-0038230_45	UniRef90_UPI000E51CC95	628.0	0	tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-0038230_45	397288.C806_00116	83.6	0.00000000000000758	N/A	N/A
Pfam	UHGV-0038230_45	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
PHROG	UHGV-0038230_46	phrog_199	76.8	2.5e-22	holin	lysis
UniRef90	UHGV-0038230_46	UniRef90_A0A3R6Q4W7	278.0	0	Holin	N/A
eggNOG-mapper	UHGV-0038230_46	411462.DORLON_00766	194.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0038230_46	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0038230_46	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0038230_46	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0038230_46	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0038230_47	phrog_872	80.6	2.2e-23	N/A	unknown function
eggNOG-mapper	UHGV-0038230_47	397290.C810_05225	110.0	1.65e-29	N/A	N/A
dbAPIS	UHGV-0038230_47	APIS052	N/A	N/A	N/A	N/A
KOfam	UHGV-0038230_48	K01448	102.6	4.9e-30	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0038230_48	phrog_435	152.3	4.2039e-45	endolysin	lysis
UniRef90	UHGV-0038230_48	UniRef90_A0A416Z2X7	483.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0038230_48	1469948.JPNB01000001_gene537	187.0	0	hmm pf01520	N/A
Pfam	UHGV-0038230_48	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0038230_48	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0038230_48	PF01520,PF18342,MF_00417,TIGR02883,COG0860,COG4991	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0038230	Yes	38,960	41	98	1
UHGV-0198846	No	31,998	41	80	1
UHGV-1739419	No	14,965	40	37	1
UHGV-1739430	No	14,965	40	37	1
UHGV-1649190	No	14,005	40	35	1