vOTU vOTU-070995

vOTU: vOTU-070995

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-070995
Number of genomes	4
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → NSJ-51 → NSJ-51 sp900549795
Taxonomy (UHGV)	vFAM-00040 → vSUBFAM-03816 → vGENUS-12715 → vSUBGEN-19607 → vOTU-070995
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → NSJ-51 → NSJ-51 sp900549795
Host range breadth	Species
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-2111940
Biosample ID	N/A
Genome length (bp)	38,107 bps
CheckV completeness	97.33% (High-quality)
CDS count	52
CDS density	91.42%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → NSJ-51 → NSJ-51 sp900549795	Total connections	10	Host agreement	80
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → NSJ-51 → NSJ-51 sp900549795	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 97.33)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-2111940_1	K03111	153.8	1.4013e-45	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-2111940_1	phrog_44	156.2	0	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2111940_1	UniRef90_A0A8J6JEC0	285.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-2111940_1	411467.BACCAP_02389	237.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-2111940_1	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-2111940_1	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-2111940_1	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-2111940_1	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-2111940_1	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-2111940_2	phrog_561	162.5	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2111940_2	UniRef90_A0A174RC35	426.0	0	RecT family	N/A
eggNOG-mapper	UHGV-2111940_2	1215092.PA6_009_00610	174.0	0	N/A	N/A
Pfam	UHGV-2111940_2	PF03837	N/A	N/A	RecT family	RecT
structural_annotation	UHGV-2111940_2	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-2111940_3	phrog_298	95.3	1.5e-28	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2111940_3	UniRef90_UPI001C97FE83	97.1	1.01e-21	PD-(D/E)XK nuclease family protein	N/A
COG	UHGV-2111940_3	COG2887	N/A	N/A	RecB family exonuclease	N/A
structural_annotation	UHGV-2111940_3	PF12705,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-2111940_5	phrog_1123	76.5	2.6e-22	N/A	unknown function
UniRef90	UHGV-2111940_5	UniRef90_UPI001EDDCAAF	150.0	1.4013e-45	DNA gyrase	N/A
eggNOG-mapper	UHGV-2111940_5	411483.FAEPRAA2165_01885	63.2	0.00000000000805	N/A	N/A
Pfam	UHGV-2111940_5	PF12840	N/A	N/A	Helix-turn-helix domain	HTH_20
structural_annotation	UHGV-2111940_5	PF04703,MF_01804,TIGR00373,COG1695	N/A	N/A	N/A	N/A
PHROG	UHGV-2111940_6	phrog_19349	43.0	0.0000000000019	N/A	unknown function
UniRef90	UHGV-2111940_6	UniRef90_UPI001C036D5E	161.0	0	lytic transglycosylase domain-containing protein	N/A
Pfam	UHGV-2111940_6	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
COG	UHGV-2111940_6	COG0741	N/A	N/A	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	N/A
structural_annotation	UHGV-2111940_6	PF01464,MF_01616,NF011856,COG0741	N/A	N/A	N/A	N/A
PHROG	UHGV-2111940_7	phrog_424	104.6	9.9e-31	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-2111940_7	UniRef90_UPI001EDF1E9D	446.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-2111940_7	742740.HMPREF9474_03063	337.0	0	N/A	N/A
PADLOC	UHGV-2111940_7	SspD_00001	71.0	3.7e-20	SspD	SSP
COG	UHGV-2111940_7	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-2111940_7	PF01507,MF_00063,NF005316,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-2111940_8	phrog_9562	97.7	1.8e-29	N/A	unknown function
UniRef90	UHGV-2111940_8	UniRef90_A0A6N3FDD3	176.0	0	Pentapeptide repeats (8 copies)	N/A
eggNOG-mapper	UHGV-2111940_8	1232443.BAIA02000078_gene49	182.0	0	Pentapeptide repeat protein	N/A
Pfam	UHGV-2111940_8	PF00805	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide
Pfam	UHGV-2111940_8	PF19062	N/A	N/A	N/A	DUF5758
COG	UHGV-2111940_8	COG1357	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2111940_8	PF19062,PF13599,NF000139	N/A	N/A	N/A	N/A
UniRef90	UHGV-2111940_13	UniRef90_A0A1C6B995	89.0	4.73e-22	Plasmid maintenance system antidote protein	N/A
eggNOG-mapper	UHGV-2111940_13	411461.DORFOR_00030	58.5	0.000000000104	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-2111940_13	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-2111940_13	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-2111940_14	K01356	91.6	6.4e-27	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-2111940_14	phrog_4	135.7	2.6e-40	transcriptional repressor	transcription regulation
UniRef90	UHGV-2111940_14	UniRef90_UPI001921ACBC	379.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-2111940_14	1408324.JNJK01000035_gene2074	127.0	1.84e-32	Peptidase S24-like	N/A
Pfam	UHGV-2111940_14	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-2111940_14	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-2111940_14	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
structural_annotation	UHGV-2111940_14	PF00717,PF01381,MF_00015,NF041951,NF007621,COG2932	N/A	N/A	N/A	N/A
UniRef90	UHGV-2111940_15	UniRef90_A0A173Y4I5	194.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-2111940_15	428125.CLOLEP_02738	76.3	7.01e-16	SMART helix-turn-helix domain protein	N/A
Pfam	UHGV-2111940_15	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-2111940_15	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-2111940_16	phrog_87	74.5	1.2e-21	metallo-protease	other
UniRef90	UHGV-2111940_16	UniRef90_A0A358M3H4	181.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-2111940_16	1007096.BAGW01000011_gene2354	159.0	0	IrrE N-terminal-like domain	N/A
COG	UHGV-2111940_16	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-2111940_16	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-2111940_18	K09524	73.3	2.6e-21	DNAJC4; DnaJ homolog subfamily C member 4	N/A
PHROG	UHGV-2111940_18	phrog_14336	57.0	3.5e-16	N/A	unknown function
eggNOG-mapper	UHGV-2111940_18	449447.MAE_10060	77.4	0.0000000000000251	DnaJ-class molecular chaperone with C-terminal Zn finger domain	N/A
Pfam	UHGV-2111940_18	PF00226	N/A	N/A	DnaJ domain	DnaJ
COG	UHGV-2111940_18	COG0484	N/A	N/A	DnaJ-class molecular chaperone with C-terminal Zn finger domain	N/A
KOfam	UHGV-2111940_19	K14059	207.8	0	int; integrase	N/A
PHROG	UHGV-2111940_19	phrog_1	184.1	0	integrase	integration and excision
UniRef90	UHGV-2111940_19	UniRef90_UPI001EDEB0AD	588.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-2111940_19	1226322.HMPREF1545_00144	330.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-2111940_19	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2111940_19	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-2111940_19	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-2111940_20	K19167	46.2	0.00000000000087	abiQ; protein AbiQ	N/A
PHROG	UHGV-2111940_20	phrog_33519	163.5	0	N/A	unknown function
eggNOG-mapper	UHGV-2111940_20	1507.HMPREF0262_01197	142.0	2.29995e-41	N/A	N/A
structural_annotation	UHGV-2111940_20	PF13958,NF010262,COG2337	N/A	N/A	N/A	N/A
UniRef90	UHGV-2111940_21	UniRef90_U2AS96	1046.0	0	MuF_C domain-containing protein	N/A
eggNOG-mapper	UHGV-2111940_21	693746.OBV_01590	583.0	0	N/A	N/A
eggNOG-mapper	UHGV-2111940_22	693746.OBV_01600	127.0	1.57e-28	N/A	N/A
PHROG	UHGV-2111940_23	phrog_199	89.8	2.7e-26	holin	lysis
UniRef90	UHGV-2111940_23	UniRef90_A0A8J6JEU7	265.0	0	Phage holin family protein	N/A
eggNOG-mapper	UHGV-2111940_23	411467.BACCAP_00280	162.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-2111940_23	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-2111940_23	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-2111940_23	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-2111940_23	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-2111940_24	K17733	91.7	8.9e-27	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	N/A
PHROG	UHGV-2111940_24	phrog_6523	72.1	9e-21	endolysin	lysis
UniRef90	UHGV-2111940_24	UniRef90_A0A8J6J9A0	383.0	0	M15 family metallopeptidase	N/A
eggNOG-mapper	UHGV-2111940_24	742738.HMPREF9460_00364	247.0	0	D-alanyl-D-alanine carboxypeptidase	N/A
Pfam	UHGV-2111940_24	PF13539	N/A	N/A	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
COG	UHGV-2111940_24	COG1876	N/A	N/A	LD-carboxypeptidase LdcB, LAS superfamily	N/A
structural_annotation	UHGV-2111940_24	PF02557,NF000472,COG2173	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2111940_25	742738.HMPREF9460_03967	116.0	4.94e-32	N/A	N/A
PHROG	UHGV-2111940_28	phrog_23208	46.0	0.00000000000023	virion structural protein	head and packaging
COG	UHGV-2111940_28	COG5295	N/A	N/A	Autotransporter adhesin	N/A
PHROG	UHGV-2111940_29	phrog_3287	71.3	1.3e-22	virion structural protein	head and packaging
UniRef90	UHGV-2111940_29	UniRef90_A0A4D7ASB8	639.0	0	N/A	N/A
eggNOG-mapper	UHGV-2111940_29	693746.OBV_01680	627.0	0	N/A	N/A
structural_annotation	UHGV-2111940_29	PF11134,MF_03027,NF010237,TIGR03511,COG2319	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2111940_30	1519439.JPJG01000011_gene57	136.0	3.03e-39	N/A	N/A
structural_annotation	UHGV-2111940_30	PF11650	N/A	N/A	N/A	N/A
PHROG	UHGV-2111940_32	phrog_422	147.9	5.60519e-44	major head protein	head and packaging
UniRef90	UHGV-2111940_32	UniRef90_A0A8J6JH37	662.0	0	Chitobiase/beta-hexosaminidase C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-2111940_32	693746.OBV_01700	238.0	0	N/A	N/A
Pfam	UHGV-2111940_32	PF13290	N/A	N/A	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
structural_annotation	UHGV-2111940_32	PF19821,PF13287,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2111940_33	755731.Clo1100_2435	82.0	0.00000000000000347	N/A	N/A
PHROG	UHGV-2111940_34	phrog_156	115.0	1.6e-34	portal protein	head and packaging
eggNOG-mapper	UHGV-2111940_34	693746.OBV_01670	604.0	0	N/A	N/A
structural_annotation	UHGV-2111940_34	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-2111940_36	K06909	142.6	3.09967e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-2111940_36	phrog_979	152.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-2111940_36	UniRef90_A0A1Y3RJJ5	752.0	0	Terminase_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-2111940_36	693746.OBV_01690	528.0	0	phage Terminase large subunit	N/A
Pfam	UHGV-2111940_36	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-2111940_36	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-2111940_36	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2111940_37	931276.Cspa_c57180	52.8	0.000000632	DNA-packaging protein gp3	N/A
Pfam	UHGV-2111940_37	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-2111940_37	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-2111940_38	K03091	61.4	2e-17	sigH; RNA polymerase sporulation-specific sigma factor	N/A
UniRef90	UHGV-2111940_38	UniRef90_A0A174RNL1	108.0	3.62e-27	RNA polymerase sigma factor SigS	N/A
Pfam	UHGV-2111940_38	PF04542	N/A	N/A	Sigma-70 region 2	Sigma70_r2
Pfam	UHGV-2111940_38	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
NCBIFam	UHGV-2111940_38	TIGR02937.1	N/A	N/A	sigma-70 family RNA polymerase sigma factor	N/A
COG	UHGV-2111940_38	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-2111940_38	PF04542,PF08281,MF_00962,NF006158,COG1191	N/A	N/A	N/A	N/A
KOfam	UHGV-2111940_41	K15773	53.0	0.0000000000000074	hipB; HTH-type transcriptional regulator / antitoxin HipB	N/A
UniRef90	UHGV-2111940_41	UniRef90_A0A096DGF2	136.0	6.24e-38	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-2111940_41	742738.HMPREF9460_00887	136.0	1.05e-38	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-2111940_41	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-2111940_41	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2111940_42	PF19070	N/A	N/A	N/A	N/A
PHROG	UHGV-2111940_46	phrog_874	176.3	0	N/A	unknown function
eggNOG-mapper	UHGV-2111940_46	411468.CLOSCI_00298	154.0	5.74532e-44	N/A	N/A
structural_annotation	UHGV-2111940_46	PF04266,MF_00684,NF003443,COG4405	N/A	N/A	N/A	N/A
PHROG	UHGV-2111940_48	phrog_37865	42.1	0.0000000000087	N/A	unknown function
Pfam	UHGV-2111940_49	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
structural_annotation	UHGV-2111940_49	PF04936,NF033558	N/A	N/A	N/A	N/A
Pfam	UHGV-2111940_50	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
PHROG	UHGV-2111940_51	phrog_190	124.9	5.3e-37	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2111940_51	UniRef90_A0A6A8VJ62	155.0	0	N/A	N/A
eggNOG-mapper	UHGV-2111940_51	1226322.HMPREF1545_00295	148.0	3.92364e-44	N/A	N/A
Pfam	UHGV-2111940_51	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-2111940_51	PF06356	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2111940_52	PF11417	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-2111940	Yes	38,107	58	97	1
UHGV-0105747	No	22,062	60	56	1
UHGV-0117468	No	11,943	60	30	1
UHGV-1583689	No	11,943	60	30	1