vOTU vOTU-071000

vOTU: vOTU-071000

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-071000
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00134 → vGENUS-00111 → vSUBGEN-24571 → vOTU-071000
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0008080
Biosample ID	SAMEA4766184
Genome length (bp)	35,592 bps
CheckV completeness	99.90% (High-quality)
CDS count	48
CDS density	89.33%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	1531	Host agreement	87
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp905215855	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0008080_1	641112.ACOK01000079_gene3100	63.9	0.00000000534	N/A	N/A
UniRef90	UHGV-0008080_2	UniRef90_A0A373KYU2	120.0	9.11e-35	Glutamyl-tRNA amidotransferase	N/A
PHROG	UHGV-0008080_5	phrog_18108	66.4	3.6e-19	N/A	unknown function
AcrCatalog	UHGV-0008080_5	cluster_73909	115.0	1.42e-34	NA	N/A
KOfam	UHGV-0008080_6	K06223	72.6	6.5e-21	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-0008080_6	phrog_56	63.5	4.5e-18	DNA methyltransferase	other
UniRef90	UHGV-0008080_6	UniRef90_UPI001D081725	95.5	3.81e-23	DNA adenine methylase	N/A
eggNOG-mapper	UHGV-0008080_6	411902.CLOBOL_03426	99.4	3.09e-24	COG COG0338 Site-specific DNA methylase	N/A
PADLOC	UHGV-0008080_6	MTase_II_00080	50.8	0.000000000000056	Type II methyltransferase	RM
Pfam	UHGV-0008080_6	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
COG	UHGV-0008080_6	COG0338	N/A	N/A	DNA-adenine methylase	N/A
KOfam	UHGV-0008080_7	K01447	58.2	1.7e-16	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0008080_7	phrog_20388	307.3	0	endolysin	lysis
UniRef90	UHGV-0008080_7	UniRef90_A0A374N1L8	560.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0008080_7	1203606.HMPREF1526_00253	317.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0008080_7	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0008080_7	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0008080_7	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0008080_7	PF01510,PF01476,PF15591,MF_02014,MF_04111,MF_01354,NF008758,NF010723,TIGR00405,COG3023,COG5004,COG2139	N/A	N/A	N/A	N/A
PHROG	UHGV-0008080_8	phrog_199	77.4	1.5e-22	holin	lysis
UniRef90	UHGV-0008080_8	UniRef90_A0A2N0ULW7	267.0	0	Holin	N/A
eggNOG-mapper	UHGV-0008080_8	1160721.RBI_I01565	143.0	6.38011e-42	Bacteriophage holin family	N/A
Pfam	UHGV-0008080_8	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0008080_8	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0008080_8	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0008080_8	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0008080_10	PF10651,PF15432,PF08931,TIGR03711	N/A	N/A	N/A	N/A
PHROG	UHGV-0008080_11	phrog_1067	113.8	1.6e-33	minor head protein	head and packaging
UniRef90	UHGV-0008080_11	UniRef90_A0A1G5CPD2	127.0	2.34e-29	Phage minor structural protein, N-terminal region	N/A
eggNOG-mapper	UHGV-0008080_11	1462527.CCDM010000003_gene3730	71.2	0.000000000214	gp58-like protein	N/A
NCBIFam	UHGV-0008080_11	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0008080_11	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0008080_11	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0008080_12	phrog_33	76.7	4.8e-22	distal tail protein Dit	tail
UniRef90	UHGV-0008080_12	UniRef90_A0A1G5CPA2	126.0	1.49e-31	Phage-related protein	N/A
eggNOG-mapper	UHGV-0008080_12	1160721.RBI_I01575	70.1	0.0000000000198	Phage tail protein	N/A
COG	UHGV-0008080_12	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0008080_12	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0008080_13	K20283	59.4	1.2e-17	GOLGA4; golgin subfamily A member 4	N/A
PHROG	UHGV-0008080_13	phrog_1272	241.4	0	tail length tape measure protein	tail
UniRef90	UHGV-0008080_13	UniRef90_A0A412ULX0	1710.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0008080_13	588581.Cpap_1264	231.0	0	Tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0008080_13	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0008080_13	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0008080_13	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0008080_14	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0008080_15	phrog_88	77.3	1.9e-22	major tail protein	tail
UniRef90	UHGV-0008080_15	UniRef90_A0A1G5CNS8	151.0	1.07059e-42	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0008080_15	483218.BACPEC_01314	59.7	0.000000024	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0008080_15	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0008080_15	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
UniRef90	UHGV-0008080_16	UniRef90_UPI000E5564A4	271.0	0	HK97 gp10 family phage protein	N/A
Pfam	UHGV-0008080_16	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0008080_16	TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0008080_17	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
PHROG	UHGV-0008080_18	phrog_19734	71.4	1e-20	N/A	unknown function
eggNOG-mapper	UHGV-0008080_18	86416.Clopa_0343	61.6	0.000000000113	N/A	N/A
structural_annotation	UHGV-0008080_18	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0008080_19	phrog_749	55.3	9.7e-16	N/A	unknown function
UniRef90	UHGV-0008080_19	UniRef90_A0A1G5CMX8	109.0	5.26e-29	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0008080_19	1211817.CCAT010000053_gene2133	59.7	0.000000000292	N/A	N/A
PHROG	UHGV-0008080_20	phrog_10	128.1	8e-38	major head protein	head and packaging
UniRef90	UHGV-0008080_20	UniRef90_A0A412ULW9	733.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0008080_20	1211817.CCAT010000053_gene2132	320.0	0	Phage capsid family	N/A
Pfam	UHGV-0008080_20	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0008080_20	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0008080_20	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0008080_20	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0008080_21	K01358	143.1	2.40042e-42	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0008080_21	phrog_94	207.5	0	head maturation protease	head and packaging
UniRef90	UHGV-0008080_21	UniRef90_A0A412ULU1	453.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0008080_21	1211817.CCAT010000053_gene2131	174.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0008080_21	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0008080_21	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0008080_21	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0008080_22	phrog_12	95.6	3.9e-28	portal protein	head and packaging
UniRef90	UHGV-0008080_22	UniRef90_A0A412ULV9	757.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0008080_22	349161.Dred_2606	260.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0008080_22	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0008080_22	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0008080_22	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0008080_22	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0008080_23	phrog_9	292.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0008080_23	UniRef90_A0A412UM03	1097.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0008080_23	86416.Clopa_0337	631.0	0	Phage Terminase	N/A
Pfam	UHGV-0008080_23	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0008080_23	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0008080_23	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0008080_23	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0008080_24	phrog_5110	83.4	1.8e-24	terminase small subunit	head and packaging
UniRef90	UHGV-0008080_24	UniRef90_A0A4U7JDP0	113.0	3.16e-30	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0008080_24	1211817.CCAT010000053_gene2128	99.8	1.58e-25	N/A	N/A
Pfam	UHGV-0008080_24	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
PHROG	UHGV-0008080_25	phrog_119	70.9	1.7e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0008080_25	UniRef90_A0A412ULY9	226.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0008080_25	1158607.UAU_01026	101.0	1.45e-26	HNH endonuclease	N/A
Pfam	UHGV-0008080_25	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0008080_25	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
eggNOG-mapper	UHGV-0008080_26	431943.CKL_4074	50.4	0.00000648	N/A	N/A
structural_annotation	UHGV-0008080_26	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0008080_27	phrog_3584	149.4	1.96182e-44	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0008080_27	1235800.C819_00515	67.8	0.000000000123	N/A	N/A
structural_annotation	UHGV-0008080_27	PF21578,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-0008080_29	phrog_2118	119.5	2.7e-35	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0008080_29	UniRef90_A0A374DVG7	236.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0008080_29	610130.Closa_0730	148.0	1.4013e-44	HNH endonuclease	N/A
Pfam	UHGV-0008080_29	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0008080_29	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0008080_29	TIGR02646,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0008080_31	phrog_824	95.8	3.2e-28	N/A	unknown function
UniRef90	UHGV-0008080_31	UniRef90_A0A3D3D6C6	169.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0008080_31	397288.C806_00096	116.0	2.04e-32	VRR_NUC	N/A
PHROG	UHGV-0008080_32	phrog_24518	81.0	1.4e-23	N/A	unknown function
eggNOG-mapper	UHGV-0008080_32	1519439.JPJG01000077_gene922	109.0	2.67e-27	N/A	N/A
KOfam	UHGV-0008080_33	K07729	52.1	0.000000000000015	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0008080_33	phrog_8	60.9	3e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0008080_33	UniRef90_A0A374N9T4	107.0	1.47e-29	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0008080_33	553973.CLOHYLEM_07194	66.2	0.000000000000692	HTH domain	N/A
Pfam	UHGV-0008080_33	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0008080_33	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0008080_33	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0008080_34	K03427	213.9	0	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-0008080_34	phrog_6380	396.7	0	DNA methyltransferase	other
UniRef90	UHGV-0008080_34	UniRef90_A0A356CYE0	801.0	0	N-6 DNA methylase	N/A
eggNOG-mapper	UHGV-0008080_34	1201292.DR75_1654	335.0	0	type I restriction-modification system	N/A
PADLOC	UHGV-0008080_34	MTase_I_00005	237.8	0	Type I methyltransferase	RM
Pfam	UHGV-0008080_34	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-0008080_34	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0008080_34	PF02384,PF01420,MF_01872,TIGR00497,COG0286,COG0732	N/A	N/A	N/A	N/A
KOfam	UHGV-0008080_35	K03497	152.5	4.2039e-45	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0008080_35	phrog_6218	250.0	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0008080_35	UniRef90_UPI000E47CAB6	737.0	0	ParB/RepB/Spo0J family partition protein	N/A
eggNOG-mapper	UHGV-0008080_35	394503.Ccel_3306	247.0	0	Belongs to the ParB family	N/A
Pfam	UHGV-0008080_35	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
NCBIFam	UHGV-0008080_35	TIGR00180.1	N/A	N/A	ParB/RepB/Spo0J family partition protein	N/A
COG	UHGV-0008080_35	COG0710	N/A	N/A	3-dehydroquinate dehydratase	N/A
structural_annotation	UHGV-0008080_35	PF18579,MF_02015,TIGR00180,COG1475	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0008080_37	COG1862	N/A	N/A	N/A	N/A
PHROG	UHGV-0008080_38	phrog_6058	43.1	0.0000000000042	N/A	unknown function
structural_annotation	UHGV-0008080_38	NF033787	N/A	N/A	N/A	N/A
PHROG	UHGV-0008080_39	phrog_8684	83.6	4.3e-25	N/A	unknown function
UniRef90	UHGV-0008080_39	UniRef90_A0A374DV44	162.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0008080_39	1121097.JCM15093_2710	75.5	0.00000000000000124	YopX protein	N/A
Pfam	UHGV-0008080_39	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0008080_39	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0008080_39	PF09643,TIGR01671	N/A	N/A	N/A	N/A
UniRef90	UHGV-0008080_43	UniRef90_A0A374DVN3	161.0	0	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0008080_43	1219626.HMPREF1639_07045	47.8	0.00000322	N/A	N/A
UniRef90	UHGV-0008080_44	UniRef90_A0A373XLN2	152.0	7.00649e-45	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0008080_44	1408823.AXUS01000025_gene2653	59.7	0.00000000437	N/A	N/A
structural_annotation	UHGV-0008080_44	PF05339,NF007257,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0008080_45	phrog_1914	144.2	7.20267e-43	N/A	unknown function
UniRef90	UHGV-0008080_45	UniRef90_UPI000E543E50	345.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0008080_45	1160721.RBI_I01604	167.0	0	N/A	N/A
Pfam	UHGV-0008080_45	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0008080_45	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0008080_45	PF06114,COG2856	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0008080_47	1232447.BAHW02000014_gene830	53.1	0.000000284	N/A	N/A
KOfam	UHGV-0008080_48	K14059	97.8	1.6e-28	int; integrase	N/A
PHROG	UHGV-0008080_48	phrog_1	120.0	2.5e-35	integrase	integration and excision
UniRef90	UHGV-0008080_48	UniRef90_A0A1G5CL52	803.0	0	Phage integrase family protein	N/A
eggNOG-mapper	UHGV-0008080_48	693746.OBV_41260	186.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0008080_48	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0008080_48	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0008080_48	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0008080	Yes	35,592	39	100	1