vOTU vOTU-071026

vOTU: vOTU-071026

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-071026
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00074 → vSUBFAM-07447 → vGENUS-20652 → vSUBGEN-40789 → vOTU-071026
Host lineage	Bacteria → Fusobacteriota → Fusobacteriia → Fusobacteriales → Fusobacteriaceae → Fusobacterium_A → Fusobacterium_A varium
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0020318
Biosample ID	SAMEA4766006
Genome length (bp)	34,427 bps
CheckV completeness	98.83% (High-quality)
CDS count	56
CDS density	93.88%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Fusobacteriota → Fusobacteriia → Fusobacteriales → Fusobacteriaceae → Fusobacterium_A → Fusobacterium_A varium	Total connections	1	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 98.83)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0020318_1	phrog_155	118.9	4.9e-35	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020318_1	UniRef90_A0A3D1PJF8	203.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0020318_1	357809.Cphy_2988	183.0	0	ERF superfamily	N/A
Pfam	UHGV-0020318_1	PF04404	N/A	N/A	ERF superfamily	ERF
COG	UHGV-0020318_1	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0020318_1	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0020318_3	phrog_253	112.2	4.1e-33	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020318_3	UniRef90_A0A521X8B7	60.8	0.0000000157	Siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0020318_3	1423724.BAMM01000020_gene1803	58.5	0.0000000165	Siphovirus Gp157	N/A
Pfam	UHGV-0020318_3	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0020318_3	PF05565	N/A	N/A	N/A	N/A
KOfam	UHGV-0020318_5	K22300	54.4	0.0000000000000027	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0020318_5	phrog_8	52.5	0.000000000000012	transcriptional regulator	transcription regulation
UniRef90	UHGV-0020318_5	UniRef90_A4XJD0	53.5	0.000000109	Transcriptional regulator, XRE family	N/A
eggNOG-mapper	UHGV-0020318_5	351627.Csac_1414	53.5	0.0000000182	PFAM helix-turn-helix domain protein	N/A
PADLOC	UHGV-0020318_5	retron_type_VI_hth_cluster2_1	45.3	0.0000000000026	N/A	Retron
Pfam	UHGV-0020318_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0020318_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0020318_5	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0020318_6	K24213	53.2	0.0000000000000011	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-0020318_6	phrog_4433	124.8	7.9e-37	N/A	unknown function
eggNOG-mapper	UHGV-0020318_6	886882.PPSC2_p0363	109.0	2.24e-24	regulation of DNA-templated transcription, elongation	N/A
Pfam	UHGV-0020318_6	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0020318_6	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0020318_6	NF007410	N/A	N/A	N/A	N/A
PHROG	UHGV-0020318_8	phrog_8463	95.7	4e-28	transposase	integration and excision
UniRef90	UHGV-0020318_8	UniRef90_A0A355V3R3	442.0	0	IS481 family transposase	N/A
eggNOG-mapper	UHGV-0020318_8	938289.CAJN020000007_gene170	224.0	0	Integrase core domain	N/A
Pfam	UHGV-0020318_8	PF00665	N/A	N/A	Integrase core domain	rve
Pfam	UHGV-0020318_8	PF13683	N/A	N/A	Integrase core domain	rve_3
COG	UHGV-0020318_8	COG2801	N/A	N/A	Transposase InsO and inactivated derivatives	N/A
structural_annotation	UHGV-0020318_8	PF00665,PF13518,NF033577,COG2801	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020318_11	PF10723,NF040976	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020318_18	PF07041	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020318_21	PF06013,MF_00683,NF003844,COG4842	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020318_22	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020318_24	PF09393,PF05561,TIGR02126,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-0020318_25	UniRef90_A0A2Z4GU91	70.5	0.000000000000109	Minor capsid protein	N/A
structural_annotation	UHGV-0020318_26	PF07405,TIGR01563	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020318_28	PF05065,PF13620,MF_04119,TIGR04387,TIGR04134,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020318_31	PF07073,MF_01077,NF037951,COG4568	N/A	N/A	N/A	N/A
PHROG	UHGV-0020318_33	phrog_581	97.9	1.4e-28	minor head protein	head and packaging
UniRef90	UHGV-0020318_33	UniRef90_A0A2Z4GUI4	217.0	0	Minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0020318_33	1211844.CBLM010000016_gene1495	92.4	4.04e-17	Phage Mu protein F like protein	N/A
Pfam	UHGV-0020318_33	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0020318_33	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0020318_34	phrog_533	87.8	1.9e-26	portal protein	head and packaging
eggNOG-mapper	UHGV-0020318_34	701257.D2XPY0_9CAUD	57.8	0.00000588	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-0020318_34	PF05133,MF_04120,TIGR01542,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0020318_35	K06909	138.0	8.80001e-41	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0020318_35	phrog_3717	72.8	3.4e-21	terminase large subunit	head and packaging
UniRef90	UHGV-0020318_35	UniRef90_UPI001A9CB26A	88.6	0.00000000000000246	PBSX family phage terminase large subunit	N/A
Pfam	UHGV-0020318_35	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0020318_35	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0020318_35	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0020318_36	UniRef90_A0A1Q6KPN9	57.0	0.000000254	HTH psq-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0020318_36	397288.C806_03010	50.8	0.0000069	N/A	N/A
Pfam	UHGV-0020318_36	PF04218	N/A	N/A	CENP-B N-terminal DNA-binding domain	CENP-B_N
structural_annotation	UHGV-0020318_36	PF02796,NF040785	N/A	N/A	N/A	N/A
KOfam	UHGV-0020318_38	K21138	73.0	5.9e-21	HDDC3; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [EC:3.1.7.2]	N/A
PHROG	UHGV-0020318_38	phrog_990	117.5	9.1e-35	metal-dependent phosphohydrolase	other
UniRef90	UHGV-0020318_38	UniRef90_A0A2B0E860	147.0	1.23034e-42	GTP pyrophosphokinase	N/A
eggNOG-mapper	UHGV-0020318_38	888727.HMPREF9092_0488	132.0	1.34e-37	N/A	N/A
COG	UHGV-0020318_38	COG0317	N/A	N/A	(p)ppGpp synthase/hydrolase, HD superfamily	N/A
structural_annotation	UHGV-0020318_38	PF13328	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0020318_41	1232436.CAPF01000032_gene1391	48.1	0.00000108	N/A	N/A
PHROG	UHGV-0020318_43	phrog_7625	56.3	4e-16	head morphogenesis	head and packaging
eggNOG-mapper	UHGV-0020318_43	1123250.KB908379_gene918	82.0	0.00000000000000239	outer membrane autotransporter barrel domain protein	N/A
COG	UHGV-0020318_43	COG3468	N/A	N/A	Autotransporter adhesin AidA	N/A
eggNOG-mapper	UHGV-0020318_45	1280664.AUIX01000060_gene2115	75.5	0.0000000000000684	N/A	N/A
KOfam	UHGV-0020318_46	K07482	335.5	0	K07482; transposase, IS30 family	N/A
PHROG	UHGV-0020318_46	phrog_4646	291.4	0	transposase	integration and excision
UniRef90	UHGV-0020318_46	UniRef90_A0A316QFP4	561.0	0	IS30 family transposase	N/A
eggNOG-mapper	UHGV-0020318_46	665956.HMPREF1032_02758	463.0	0	PFAM Integrase catalytic region	N/A
Pfam	UHGV-0020318_46	PF13936	N/A	N/A	Helix-turn-helix domain	HTH_38
Pfam	UHGV-0020318_46	PF00665	N/A	N/A	Integrase core domain	rve
NCBIFam	UHGV-0020318_46	NF033563.0	N/A	N/A	IS30 family transposase	N/A
COG	UHGV-0020318_46	COG2826	N/A	N/A	Transposase and inactivated derivatives, IS30 family	N/A
structural_annotation	UHGV-0020318_46	PF13936,PF02914,MF_01310,NF033563,COG2826	N/A	N/A	N/A	N/A
COG	UHGV-0020318_48	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0020318_49	PF05263,TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-0020318_50	K03111	141.9	6.99949e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0020318_50	phrog_44	136.8	1.50001e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020318_50	UniRef90_A0A3D2D458	188.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0020318_50	666686.B1NLA3E_22195	122.0	1.89e-33	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0020318_50	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0020318_50	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0020318_50	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0020318_50	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0020318_50	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0020318_53	phrog_398	188.2	0	N/A	unknown function
UniRef90	UHGV-0020318_53	UniRef90_UPI00137B6F1E	206.0	0	putative HNHc nuclease	N/A
eggNOG-mapper	UHGV-0020318_53	1485543.JMME01000021_gene802	193.0	0	Putative HNHc nuclease	N/A
Pfam	UHGV-0020318_53	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-0020318_53	PF16784	N/A	N/A	N/A	N/A
PHROG	UHGV-0020318_54	phrog_4973	60.4	2.8e-17	N/A	unknown function
UniRef90	UHGV-0020318_54	UniRef90_A0A3D3Y0P8	69.7	0.0000000000000451	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0020318_54	935261.JAGL01000009_gene1175	53.5	0.0000000142	Helix-turn-helix domain	N/A
Pfam	UHGV-0020318_54	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0020318_54	PF14090,NF040939,COG4738	N/A	N/A	N/A	N/A
PHROG	UHGV-0020318_55	phrog_1682	59.9	4.5e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020318_55	UniRef90_R7FGZ0	83.2	4.24e-18	Gp63	N/A
eggNOG-mapper	UHGV-0020318_55	1120985.AUMI01000019_gene2247	68.6	0.000000000000544	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
Pfam	UHGV-0020318_55	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0020318_55	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0020318_55	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0020318_56	phrog_270	41.7	0.000000000012	replication initiation protein	DNA, RNA and nucleotide metabolism
Pfam	UHGV-0020318_56	PF13545	N/A	N/A	Crp-like helix-turn-helix domain	HTH_Crp_2

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0020318	Yes	34,427	44	99	1