vOTU vOTU-071058

vOTU: vOTU-071058

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-071058
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00022 → vSUBFAM-00313 → vGENUS-00344 → vSUBGEN-25028 → vOTU-071058
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0190197
Biosample ID	N/A
Genome length (bp)	32,415 bps
CheckV completeness	98.48% (High-quality)
CDS count	44
CDS density	91.56%
tRNA count	2
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger formicilis	Total connections	41	Host agreement	75.61
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger	Total connections	52	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 98.48)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0190197_2	phrog_10226	165.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0190197_2	431943.CKL_3226	142.0	1.04e-35	N/A	N/A
KOfam	UHGV-0190197_3	K01356	63.2	6.6e-18	lexA; repressor LexA [EC:3.4.21.88]	N/A
UniRef90	UHGV-0190197_3	UniRef90_A0A1Y4IG64	74.7	4.45e-16	XRE family transcriptional regulator (Fragment)	N/A
eggNOG-mapper	UHGV-0190197_3	411483.FAEPRAA2165_03041	91.3	5.64e-22	N/A	N/A
Pfam	UHGV-0190197_3	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0190197_3	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0190197_3	PF00717,NF007621,COG4481	N/A	N/A	N/A	N/A
KOfam	UHGV-0190197_5	K01356	148.4	7.42688e-44	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0190197_5	phrog_4	121.5	8.3e-36	transcriptional repressor	transcription regulation
UniRef90	UHGV-0190197_5	UniRef90_A0A6N8H052	290.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0190197_5	411483.FAEPRAA2165_03041	198.0	0	N/A	N/A
Pfam	UHGV-0190197_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0190197_5	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0190197_5	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0190197_5	PF00717,PF01381,MF_00015,TIGR00498,COG2932	N/A	N/A	N/A	N/A
UniRef90	UHGV-0190197_6	UniRef90_A0A533STR5	85.5	1.46e-20	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0190197_6	1321814.HMPREF9089_00909	53.9	0.00000000808	Helix-turn-helix domain of resolvase	N/A
structural_annotation	UHGV-0190197_6	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0190197_7	K23779	43.3	0.0000000000067	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
UniRef90	UHGV-0190197_7	UniRef90_F0YWQ6	62.4	0.000000000102	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0190197_7	556261.HMPREF0240_01268	62.4	0.0000000000171	Helix-turn-helix	N/A
Pfam	UHGV-0190197_7	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0190197_7	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0190197_9	COG2005	N/A	N/A	N/A	N/A
PHROG	UHGV-0190197_11	phrog_10280	51.5	0.0000000000000096	N/A	unknown function
eggNOG-mapper	UHGV-0190197_11	742738.HMPREF9460_02068	56.6	0.00000121	N/A	N/A
structural_annotation	UHGV-0190197_12	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0190197_13	phrog_72	48.4	0.00000000000014	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0190197_13	411471.SUBVAR_05829	183.0	0	N/A	N/A
structural_annotation	UHGV-0190197_13	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0190197_14	phrog_7566	68.8	6.4e-20	N/A	unknown function
eggNOG-mapper	UHGV-0190197_14	411471.SUBVAR_05830	110.0	2.28e-30	N/A	N/A
KOfam	UHGV-0190197_15	K03111	133.8	2e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0190197_15	phrog_44	141.0	7.49975e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0190197_15	UniRef90_A0A6N8H0I4	256.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0190197_15	411471.SUBVAR_04646	179.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0190197_15	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0190197_15	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0190197_15	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0190197_15	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0190197_15	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0190197_16	phrog_19658	83.6	2.3e-24	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0190197_16	UniRef90_A0A6N8H2D2	277.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0190197_16	411471.SUBVAR_05835	206.0	0	Helix-turn-helix domain	N/A
Pfam	UHGV-0190197_16	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0190197_16	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0190197_16	PF13730,MF_01909,TIGR04176,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-0190197_17	K02314	229.0	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0190197_17	phrog_19	216.1	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0190197_17	UniRef90_A0A6N8GZX5	813.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0190197_17	411471.SUBVAR_05838	418.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0190197_17	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0190197_17	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0190197_17	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0190197_17	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
KOfam	UHGV-0190197_18	K03496	221.8	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0190197_18	phrog_164	168.4	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0190197_18	UniRef90_A0A1Q6T3I8	483.0	0	AAA_31 domain-containing protein	N/A
eggNOG-mapper	UHGV-0190197_18	411471.SUBVAR_05839	279.0	0	AAA domain	N/A
Pfam	UHGV-0190197_18	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0190197_18	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0190197_18	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-0190197_19	K03497	94.7	1.6e-27	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0190197_19	phrog_4715	139.5	1.40004e-41	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0190197_19	UniRef90_A0A1Q6T350	767.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0190197_19	411471.SUBVAR_05842	356.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0190197_19	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0190197_19	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0190197_19	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0190197_20	phrog_36	74.8	1.4e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-0190197_20	UniRef90_A0A3E2U224	102.0	2.13e-25	Sigma70_r4_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0190197_20	411471.SUBVAR_05843	135.0	5.08e-39	N/A	N/A
structural_annotation	UHGV-0190197_20	PF04545,NF033634	N/A	N/A	N/A	N/A
PHROG	UHGV-0190197_23	phrog_1066	87.0	1.8e-25	N/A	unknown function
eggNOG-mapper	UHGV-0190197_23	1094508.Tsac_2428	97.4	1.04e-24	N/A	N/A
structural_annotation	UHGV-0190197_23	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0190197_24	phrog_9	330.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0190197_24	UniRef90_A0A8J6TY49	890.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0190197_24	411471.SUBVAR_05848	793.0	0	large subunit	N/A
Pfam	UHGV-0190197_24	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0190197_24	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0190197_24	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0190197_24	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0190197_25	phrog_12	123.1	1.9e-36	portal protein	head and packaging
UniRef90	UHGV-0190197_25	UniRef90_UPI00195C5E58	645.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0190197_25	742740.HMPREF9474_04306	590.0	0	Phage portal protein	N/A
Pfam	UHGV-0190197_25	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0190197_25	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0190197_25	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0190197_26	K06904	125.3	6.6e-37	N/A	N/A
PHROG	UHGV-0190197_26	phrog_80	136.7	2.29999e-40	head maturation protease	head and packaging
UniRef90	UHGV-0190197_26	UniRef90_A0A1C5W530	270.0	0	Phage prohead protease, HK97 family	N/A
eggNOG-mapper	UHGV-0190197_26	411471.SUBVAR_05851	252.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-0190197_26	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
COG	UHGV-0190197_26	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0190197_26	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0190197_27	phrog_10	59.3	5.5e-17	major head protein	head and packaging
UniRef90	UHGV-0190197_27	UniRef90_A0A1C5W5F9	446.0	0	Phage major capsid protein, HK97 family	N/A
eggNOG-mapper	UHGV-0190197_27	742740.HMPREF9474_04304	395.0	0	Phage capsid family	N/A
Pfam	UHGV-0190197_27	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0190197_27	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0190197_27	PF05065,PF09032,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0190197_28	phrog_5223	72.0	5.9e-21	neck protein	connector
UniRef90	UHGV-0190197_28	UniRef90_UPI00195CBB4A	142.0	1.77965e-42	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0190197_28	411471.SUBVAR_05853	92.4	3.33e-23	N/A	N/A
PHROG	UHGV-0190197_29	phrog_1951	61.5	1.2e-17	head-tail adaptor	connector
UniRef90	UHGV-0190197_29	UniRef90_UPI00195B41A2	160.0	0	phage head closure protein	N/A
eggNOG-mapper	UHGV-0190197_29	411470.RUMGNA_02070	61.2	0.0000000000919	N/A	N/A
NCBIFam	UHGV-0190197_29	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0190197_29	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0190197_30	phrog_5	47.9	0.00000000000031	tail completion or Neck1 protein	connector
eggNOG-mapper	UHGV-0190197_30	1195236.CTER_5108	69.7	0.000000000000313	Phage protein, HK97 gp10 family	N/A
NCBIFam	UHGV-0190197_30	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0190197_30	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0190197_32	phrog_88	44.1	0.0000000000031	major tail protein	tail
structural_annotation	UHGV-0190197_32	PF06488,TIGR01603	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0190197_33	PF12363	N/A	N/A	N/A	N/A
PHROG	UHGV-0190197_34	phrog_8462	121.0	1.6e-37	tail length tape measure protein	tail
UniRef90	UHGV-0190197_34	UniRef90_A0A174XMM8	254.0	0	Tail tape measure protein TP901 core region	N/A
eggNOG-mapper	UHGV-0190197_34	1195236.CTER_5104	268.0	0	nuclear chromosome segregation	N/A
COG	UHGV-0190197_34	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0190197_34	TIGR01760,COG5280	N/A	N/A	N/A	N/A
UniRef90	UHGV-0190197_35	UniRef90_A0A3D0W045	224.0	0	Fibronectin type-III domain-containing protein	N/A
eggNOG-mapper	UHGV-0190197_35	1161901.I1TLF2_9CAUD	74.3	0.000000000132	N/A	N/A
structural_annotation	UHGV-0190197_35	PF02010,PF06995,MF_04116,NF010681,COG3401,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0190197_36	phrog_26795	90.0	1.6e-26	N/A	unknown function
eggNOG-mapper	UHGV-0190197_36	742740.HMPREF9474_04294	124.0	1.53e-29	N/A	N/A
structural_annotation	UHGV-0190197_36	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0190197_37	PF18614,MF_00085,NF003082,COG0361	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0190197_38	PF16407	N/A	N/A	N/A	N/A
PHROG	UHGV-0190197_39	phrog_5302	171.0	0	tail protein	tail
UniRef90	UHGV-0190197_39	UniRef90_UPI00156EC4BD	139.0	1.9e-31	phage tail protein	N/A
eggNOG-mapper	UHGV-0190197_39	411470.RUMGNA_00248	160.0	6.94e-40	Phage tail-collar fibre protein	N/A
COG	UHGV-0190197_39	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
PHROG	UHGV-0190197_40	phrog_4912	70.5	2.9e-20	tail fiber assembly	tail
UniRef90	UHGV-0190197_40	UniRef90_UPI0019223612	80.1	1.88e-16	phage tail assembly chaperone	N/A
eggNOG-mapper	UHGV-0190197_40	643562.Daes_0337	70.1	0.000000000000272	N/A	N/A
Pfam	UHGV-0190197_40	PF16778	N/A	N/A	Phage tail assembly chaperone protein	Phage_tail_APC
structural_annotation	UHGV-0190197_40	PF16778	N/A	N/A	N/A	N/A
KOfam	UHGV-0190197_42	K19304	117.3	1.7e-34	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-0190197_42	phrog_10030	80.5	7e-24	tail length tape measure protein	tail
UniRef90	UHGV-0190197_42	UniRef90_UPI0019599082	299.0	0	M23 family metallopeptidase	N/A
eggNOG-mapper	UHGV-0190197_42	264732.Moth_2422	90.9	2.22e-18	G5 domain protein	N/A
Pfam	UHGV-0190197_42	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-0190197_42	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-0190197_42	PF01551,NF040883	N/A	N/A	N/A	N/A
PHROG	UHGV-0190197_43	phrog_1863	63.0	3e-18	N/A	unknown function
eggNOG-mapper	UHGV-0190197_43	693746.OBV_18260	100.0	8.37e-27	N/A	N/A
PHROG	UHGV-0190197_44	phrog_13256	54.3	0.0000000000000017	N/A	unknown function
eggNOG-mapper	UHGV-0190197_44	1226322.HMPREF1545_00132	54.3	0.00000000653	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0190197	Yes	32,415	56	98	1