vOTU vOTU-071121

vOTU: vOTU-071121

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-071121
Number of genomes	13
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Taxonomy (UHGV)	vFAM-00001 → vSUBFAM-01113 → vGENUS-02521 → vSUBGEN-38378 → vOTU-071121
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2110288
Biosample ID	SAMEA3708762
Genome length (bp)	42,378 bps
CheckV completeness	96.61% (High-quality)
CDS count	54
CDS density	88.67%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	441	Host agreement	82.54
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	247	Host agreement	97.17

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 96.61)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-2110288_1	K03088	95.6	7.5e-28	rpoE; RNA polymerase sigma-70 factor, ECF subfamily	N/A
PHROG	UHGV-2110288_1	phrog_1740	59.4	4.8e-17	RNA polymerase sigma factor	transcription regulation
UniRef90	UHGV-2110288_1	UniRef90_UPI0014733B06	437.0	0	sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-2110288_1	411474.COPEUT_02341	165.0	7.28675e-44	DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog	N/A
Pfam	UHGV-2110288_1	PF04542	N/A	N/A	Sigma-70 region 2	Sigma70_r2
Pfam	UHGV-2110288_1	PF07638	N/A	N/A	ECF sigma factor	Sigma70_ECF
NCBIFam	UHGV-2110288_1	TIGR02937.1	N/A	N/A	sigma-70 family RNA polymerase sigma factor	N/A
COG	UHGV-2110288_1	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
KOfam	UHGV-2110288_3	K14059	157.3	0	int; integrase	N/A
PHROG	UHGV-2110288_3	phrog_1	171.4	0	integrase	integration and excision
UniRef90	UHGV-2110288_3	UniRef90_A0A412L7T7	696.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-2110288_3	1540257.JQMW01000011_gene2033	325.0	0	Phage integrase family	N/A
Pfam	UHGV-2110288_3	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2110288_3	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-2110288_3	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-2110288_4	K22299	57.4	3.9e-16	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-2110288_4	phrog_8	62.0	1.4e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-2110288_4	UniRef90_A0A374NFM5	128.0	9e-38	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-2110288_4	1567011.A0A0A7RUJ5_9VIRU	68.9	0.0000000000000138	protein disulfide oxidoreductase activity	N/A
PADLOC	UHGV-2110288_4	retron_type_VI_hth_cluster2_1	45.7	0.0000000000019	N/A	Retron
Pfam	UHGV-2110288_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-2110288_4	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-2110288_6	phrog_10226	182.1	0	N/A	unknown function
eggNOG-mapper	UHGV-2110288_6	431943.CKL_3226	179.0	0	N/A	N/A
structural_annotation	UHGV-2110288_6	COG4127	N/A	N/A	N/A	N/A
KOfam	UHGV-2110288_7	K01356	113.5	3.1e-33	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-2110288_7	phrog_4	127.6	1.2e-37	transcriptional repressor	transcription regulation
UniRef90	UHGV-2110288_7	UniRef90_UPI0015F84BF4	305.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-2110288_7	246199.CUS_5911	135.0	7.84e-37	N/A	N/A
Pfam	UHGV-2110288_7	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-2110288_7	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-2110288_7	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-2110288_7	PF00717,PF12844,MF_00015,TIGR00498,TIGR03070,COG1974,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-2110288_8	UniRef90_UPI00164BE78E	70.9	0.00000000000000951	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-2110288_8	999411.HMPREF1092_00882	55.8	0.00000000166	Helix-turn-helix	N/A
Pfam	UHGV-2110288_8	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-2110288_8	PF05339,NF002773,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2110288_16	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-2110288_18	phrog_408	62.5	6.8e-18	N/A	unknown function
PHROG	UHGV-2110288_19	phrog_69	344.5	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2110288_19	UniRef90_A0A412L7W2	771.0	0	N/A	N/A
eggNOG-mapper	UHGV-2110288_19	1151292.QEW_2472	374.0	0	N/A	N/A
Pfam	UHGV-2110288_19	PF10926	N/A	N/A	N/A	DUF2800
COG	UHGV-2110288_19	COG2887	N/A	N/A	RecB family exonuclease	N/A
structural_annotation	UHGV-2110288_19	PF10926,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-2110288_20	phrog_112	216.0	0	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2110288_20	UniRef90_A0A412UNI7	360.0	0	N/A	N/A
eggNOG-mapper	UHGV-2110288_20	1123288.SOV_6c00600	238.0	0	N/A	N/A
Pfam	UHGV-2110288_20	PF10991	N/A	N/A	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
structural_annotation	UHGV-2110288_20	PF10991,MF_04153	N/A	N/A	N/A	N/A
KOfam	UHGV-2110288_21	K02334	894.1	0	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	N/A
PHROG	UHGV-2110288_21	phrog_17	410.6	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2110288_21	UniRef90_A0A412UNJ8	1281.0	0	POLAc domain-containing protein	N/A
eggNOG-mapper	UHGV-2110288_21	1274524.BSONL12_06038	768.0	0	DNA polymerase A domain	N/A
Pfam	UHGV-2110288_21	PF00476	N/A	N/A	DNA polymerase family A	DNA_pol_A
COG	UHGV-2110288_21	COG0749	N/A	N/A	DNA polymerase I, 3'-5' exonuclease and polymerase domains	N/A
structural_annotation	UHGV-2110288_21	PF00476,MF_04101,NF011540,COG0749	N/A	N/A	N/A	N/A
PHROG	UHGV-2110288_22	phrog_256	1067.4	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2110288_22	UniRef90_UPI001D06E26F	837.0	0	virulence-associated E family protein	N/A
eggNOG-mapper	UHGV-2110288_22	1567012.A0A0A7RTG3_9VIRU	826.0	0	Virulence-associated protein E	N/A
Pfam	UHGV-2110288_22	PF05272	N/A	N/A	Virulence-associated protein E-like domain	VapE-like_dom
structural_annotation	UHGV-2110288_22	PF05272,MF_04000,NF005477,NF040562,COG5545	N/A	N/A	N/A	N/A
PHROG	UHGV-2110288_23	phrog_93	78.7	7.6e-23	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2110288_23	UniRef90_A0A412UNG8	200.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-2110288_23	97138.C820_00219	107.0	3.83e-29	VRR-NUC domain-containing protein	N/A
structural_annotation	UHGV-2110288_23	PF01870,MF_00130,NF002584,COG1591	N/A	N/A	N/A	N/A
KOfam	UHGV-2110288_24	K14440	79.3	1.1e-37	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-2110288_24	phrog_62	411.7	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2110288_24	UniRef90_A0A412L7W0	910.0	0	ATP-dependent helicase	N/A
eggNOG-mapper	UHGV-2110288_24	97138.C820_00220	629.0	0	snf2 family	N/A
PADLOC	UHGV-2110288_24	ZorD1_00007	88.1	7.8e-26	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-2110288_24	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-2110288_24	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-2110288_24	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-2110288_24	PF13872,PF16203,MF_01821,NF041790,COG0553	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2110288_27	PF15597	N/A	N/A	N/A	N/A
PHROG	UHGV-2110288_29	phrog_36	81.4	1.4e-23	transcriptional regulator	transcription regulation
UniRef90	UHGV-2110288_29	UniRef90_A0A2N0UXQ6	268.0	0	N/A	N/A
eggNOG-mapper	UHGV-2110288_29	1401067.HMPREF0872_06835	95.5	2.58e-23	N/A	N/A
Pfam	UHGV-2110288_29	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-2110288_29	PF07374,MF_00674,TIGR01636,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-2110288_30	K06909	398.6	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-2110288_30	phrog_3717	146.6	5.60519e-45	terminase large subunit	head and packaging
UniRef90	UHGV-2110288_30	UniRef90_A0A2N0ULW5	1032.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-2110288_30	411461.DORFOR_01162	618.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-2110288_30	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-2110288_30	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-2110288_30	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-2110288_30	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-2110288_30	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-2110288_31	phrog_533	326.8	0	portal protein	head and packaging
UniRef90	UHGV-2110288_31	UniRef90_A0A2N0ULU9	837.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-2110288_31	1304866.K413DRAFT_3035	473.0	0	N/A	N/A
structural_annotation	UHGV-2110288_31	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-2110288_32	phrog_581	312.1	0	minor head protein	head and packaging
UniRef90	UHGV-2110288_32	UniRef90_A0A2N0ULU5	745.0	0	Putative ADP-ribosyltransferase Certhrax	N/A
eggNOG-mapper	UHGV-2110288_32	411470.RUMGNA_02213	369.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-2110288_32	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-2110288_32	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2110288_32	PF06152,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-2110288_34	phrog_478	129.3	1.5e-38	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-2110288_34	UniRef90_A0A285PT53	146.0	1.03976e-42	Prokaryotic membrane lipoprotein lipid attachment site profile	N/A
eggNOG-mapper	UHGV-2110288_34	478749.BRYFOR_08526	148.0	2.24208e-44	N/A	N/A
PHROG	UHGV-2110288_35	phrog_2616	47.2	0.00000000000048	N/A	unknown function
structural_annotation	UHGV-2110288_35	PF01281	N/A	N/A	N/A	N/A
PHROG	UHGV-2110288_36	phrog_194	102.4	5.5e-30	head scaffolding protein	head and packaging
UniRef90	UHGV-2110288_36	UniRef90_A0A2N0ULW9	336.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-2110288_36	742765.HMPREF9457_02126	171.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-2110288_36	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-2110288_36	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-2110288_37	phrog_422	229.1	0	major head protein	head and packaging
eggNOG-mapper	UHGV-2110288_37	693746.OBV_18090	392.0	0	N/A	N/A
structural_annotation	UHGV-2110288_37	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-2110288_38	phrog_541	80.1	2.5e-23	head-tail adaptor	connector
UniRef90	UHGV-2110288_38	UniRef90_A0A371AQT0	109.0	1.94e-28	N/A	N/A
eggNOG-mapper	UHGV-2110288_38	1449050.JNLE01000003_gene3888	85.9	5.27e-20	N/A	N/A
PHROG	UHGV-2110288_39	phrog_3366	73.6	2.3e-21	N/A	unknown function
eggNOG-mapper	UHGV-2110288_39	1449050.JNLE01000003_gene3887	89.0	6.3e-21	N/A	N/A
Pfam	UHGV-2110288_39	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-2110288_39	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-2110288_40	phrog_556	121.8	1.9e-36	minor head protein	head and packaging
UniRef90	UHGV-2110288_40	UniRef90_UPI00189BC4F9	182.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-2110288_40	1449050.JNLE01000003_gene3886	177.0	0	N/A	N/A
Pfam	UHGV-2110288_40	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-2110288_40	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-2110288_41	phrog_3266	107.3	1e-31	tail completion	connector
eggNOG-mapper	UHGV-2110288_41	1449050.JNLE01000003_gene3885	143.0	5.34035e-42	N/A	N/A
structural_annotation	UHGV-2110288_41	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-2110288_42	phrog_3099	150.2	8.40779e-45	N/A	unknown function
eggNOG-mapper	UHGV-2110288_42	1160721.RBI_II00532	237.0	0	N/A	N/A
structural_annotation	UHGV-2110288_42	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-2110288_43	phrog_11299	135.3	3.20001e-40	N/A	unknown function
eggNOG-mapper	UHGV-2110288_43	1449050.JNLE01000003_gene3883	99.4	1.08e-24	N/A	N/A
structural_annotation	UHGV-2110288_43	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-2110288_44	phrog_706	142.9	1.90016e-42	N/A	unknown function
UniRef90	UHGV-2110288_44	UniRef90_A0A2N0ULW2	363.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-2110288_44	1160721.RBI_II00530	214.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-2110288_44	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-2110288_44	PF06854	N/A	N/A	N/A	N/A
Pfam	UHGV-2110288_45	PF12869	N/A	N/A	tRNA_anti-like	tRNA_anti-like
PHROG	UHGV-2110288_46	phrog_1535	477.6	0	tail length tape measure protein	tail
UniRef90	UHGV-2110288_46	UniRef90_A0A2N0ULX3	2033.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-2110288_46	33035.JPJF01000093_gene2243	348.0	0	phage tail tape measure protein	N/A
COG	UHGV-2110288_46	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-2110288_46	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-2110288_47	phrog_1194	63.3	3.5e-18	N/A	unknown function
eggNOG-mapper	UHGV-2110288_47	397290.C810_05238	94.0	1.02e-22	N/A	N/A
Pfam	UHGV-2110288_47	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-2110288_47	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2110288_48	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-2110288_49	phrog_2012	40.7	0.000000000048	minor tail protein	tail
UniRef90	UHGV-2110288_49	UniRef90_A0A374N9Y2	143.0	1.19e-35	N/A	N/A
structural_annotation	UHGV-2110288_49	PF10651,PF15432,PF08931,TIGR03711	N/A	N/A	N/A	N/A
PHROG	UHGV-2110288_51	phrog_1009	40.0	0.000000000061	N/A	unknown function
UniRef90	UHGV-2110288_51	UniRef90_A0A373XMY3	175.0	0	Branched-chain amino acid ABC transporter permease	N/A
eggNOG-mapper	UHGV-2110288_51	742765.HMPREF9457_03364	84.7	2.33e-20	N/A	N/A
PHROG	UHGV-2110288_52	phrog_881	80.3	1.4e-23	holin	lysis
UniRef90	UHGV-2110288_52	UniRef90_A0A843HKU1	99.8	4.12e-26	Phage holin	N/A
eggNOG-mapper	UHGV-2110288_52	742740.HMPREF9474_02251	101.0	1.04e-27	Putative phage holin Dp-1	N/A
Pfam	UHGV-2110288_52	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-2110288_52	PF16938	N/A	N/A	N/A	N/A
KOfam	UHGV-2110288_53	K01448	56.8	3.8e-16	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-2110288_53	phrog_435	83.2	4.3e-24	endolysin	lysis
UniRef90	UHGV-2110288_53	UniRef90_A0A373KFY8	435.0	0	SH3b domain-containing protein	N/A
eggNOG-mapper	UHGV-2110288_53	1203606.HMPREF1526_01931	85.9	1.41e-16	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-2110288_53	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-2110288_53	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-2110288_53	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
PHROG	UHGV-2110288_54	phrog_8614	77.4	5.9e-24	N/A	unknown function
UniRef90	UHGV-2110288_54	UniRef90_A0A374FW63	1445.0	0	KAP NTPase domain-containing protein	N/A
eggNOG-mapper	UHGV-2110288_54	1415775.U729_2995	460.0	0	KAP family P-loop domain	N/A
PADLOC	UHGV-2110288_54	PifA	254.0	0	PifA	Abi
Pfam	UHGV-2110288_54	PF07693	N/A	N/A	KAP family P-loop domain	KAP_NTPase
COG	UHGV-2110288_54	COG4928	N/A	N/A	Predicted P-loop ATPase, KAP-like	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-2110288	Yes	42,378	40	97	1
UHGV-1504955	No	36,691	41	87	1
UHGV-0073339	No	36,440	41	86	1
UHGV-1395486	No	36,440	41	86	1
UHGV-0123743	No	39,638	41	85	1
UHGV-1522738	No	33,894	42	80	1
UHGV-1431242	No	31,255	42	74	1
UHGV-0320621	No	31,741	42	72	1
UHGV-1738177	No	17,756	43	42	1
UHGV-1675475	No	17,689	43	42	1
UHGV-0278035	No	16,601	42	37	1
UHGV-1825327	No	12,075	43	29	1
UHGV-1546523	No	11,468	43	23	1