vOTU vOTU-071284

vOTU: vOTU-071284

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-071284
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00087 → vSUBFAM-03077 → vGENUS-15131 → vSUBGEN-26115 → vOTU-071284
Host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → CAG-138 → UBA1685 → UBA1685 sp002320595
Host range breadth	Species
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-1487706
Biosample ID	N/A
Genome length (bp)	36,818 bps
CheckV completeness	99.90% (High-quality)
CDS count	53
CDS density	95.90%
tRNA count	1
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → CAG-138 → UBA1685 → UBA1685 sp002320595	Total connections	87	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → CAG-138 → UBA1685 → UBA1685 sp002320595	Total connections	5	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1487706_1	phrog_4433	168.4	0	N/A	unknown function
eggNOG-mapper	UHGV-1487706_1	573061.Clocel_3578	132.0	9.53e-35	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-1487706_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
UniRef90	UHGV-1487706_3	UniRef90_UPI000F0633F9	59.7	0.000000000264	DNA-binding protein	N/A
eggNOG-mapper	UHGV-1487706_3	1235835.C814_03153	66.2	0.000000000000137	N/A	N/A
structural_annotation	UHGV-1487706_3	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
UniRef90	UHGV-1487706_6	UniRef90_UPI00164C9F56	57.0	0.00000000149	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1487706_6	1219626.HMPREF1639_07045	48.5	0.000000584	N/A	N/A
UniRef90	UHGV-1487706_7	UniRef90_A0A0V8QHC6	72.0	0.000000000000119	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1487706_7	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1487706_7	PF01381,MF_02017,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1487706_10	K14059	126.2	4.2e-37	int; integrase	N/A
PHROG	UHGV-1487706_10	phrog_1	152.7	2.8026e-45	integrase	integration and excision
UniRef90	UHGV-1487706_10	UniRef90_A0A0M2NGB2	346.0	0	DNA integration/recombination/inversion protein	N/A
eggNOG-mapper	UHGV-1487706_10	698758.AXY_01580	107.0	1.32e-23	Phage integrase family	N/A
Pfam	UHGV-1487706_10	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-1487706_10	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1487706_10	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1487706_10	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1487706_11	742738.HMPREF9460_00886	73.6	0.0000000000000321	N/A	N/A
structural_annotation	UHGV-1487706_11	TIGR03826	N/A	N/A	N/A	N/A
PHROG	UHGV-1487706_13	phrog_13890	59.9	3.1e-17	N/A	unknown function
UniRef90	UHGV-1487706_13	UniRef90_A0A417NGM5	62.0	0.0000000000211	Arc family DNA-binding protein	N/A
eggNOG-mapper	UHGV-1487706_13	877414.ATWA01000049_gene449	57.4	0.000000000243	N/A	N/A
Pfam	UHGV-1487706_13	PF03869	N/A	N/A	Arc-like DNA binding domain	Arc
UniRef90	UHGV-1487706_14	UniRef90_UPI0009523D83	133.0	1.75e-37	helix-turn-helix domain containing protein	N/A
eggNOG-mapper	UHGV-1487706_14	1226322.HMPREF1545_00042	110.0	2.55e-29	N/A	N/A
structural_annotation	UHGV-1487706_14	PF13542	N/A	N/A	N/A	N/A
KOfam	UHGV-1487706_15	K06909	120.0	2.4e-35	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1487706_15	phrog_979	150.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-1487706_15	UniRef90_A0A8F2F0S5	506.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1487706_15	1232449.BAHV02000016_gene1824	427.0	0	N/A	N/A
Pfam	UHGV-1487706_15	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-1487706_15	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1487706_15	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1487706_17	phrog_156	108.0	4.2e-33	portal protein	head and packaging
eggNOG-mapper	UHGV-1487706_17	1408437.JNJN01000001_gene1708	404.0	0	N/A	N/A
structural_annotation	UHGV-1487706_17	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1487706_18	755731.Clo1100_2435	89.0	8.19e-18	N/A	N/A
PHROG	UHGV-1487706_19	phrog_422	98.1	8.3e-29	major head protein	head and packaging
UniRef90	UHGV-1487706_19	UniRef90_UPI001C3C1165	222.0	0	Chitobiase/beta-hexosaminidase C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-1487706_19	1408437.JNJN01000001_gene1710	218.0	0	N/A	N/A
Pfam	UHGV-1487706_19	PF13290	N/A	N/A	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
structural_annotation	UHGV-1487706_19	PF19821,PF13287,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1487706_20	PF11650	N/A	N/A	N/A	N/A
PHROG	UHGV-1487706_21	phrog_3287	187.6	0	virion structural protein	head and packaging
eggNOG-mapper	UHGV-1487706_21	1232449.BAHV02000016_gene1816	464.0	0	N/A	N/A
structural_annotation	UHGV-1487706_21	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1487706_23	1408437.JNJN01000039_gene389	501.0	0	heme binding	N/A
COG	UHGV-1487706_23	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-1487706_23	PF09486	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1487706_24	1232449.BAHV02000016_gene1815	59.7	0.000000778	N/A	N/A
structural_annotation	UHGV-1487706_25	PF21722	N/A	N/A	N/A	N/A
KOfam	UHGV-1487706_27	K18454	50.5	0.000000000000027	deaA; chitin disaccharide deacetylase [EC:3.5.1.105]	N/A
PHROG	UHGV-1487706_27	phrog_30034	69.1	7.5e-20	N/A	unknown function
UniRef90	UHGV-1487706_27	UniRef90_A0A1C5VT90	145.0	2.71011e-42	Chitinase A1	N/A
eggNOG-mapper	UHGV-1487706_27	994573.T472_0212005	120.0	4.67e-32	N/A	N/A
Pfam	UHGV-1487706_27	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-1487706_27	PF14600	N/A	N/A	N/A	N/A
KOfam	UHGV-1487706_28	K19303	72.6	6.3e-21	mepH; murein DD-endopeptidase [EC:3.4.-.-]	N/A
PHROG	UHGV-1487706_28	phrog_1493	67.2	2.7e-19	endolysin	lysis
UniRef90	UHGV-1487706_28	UniRef90_A0A316RRK6	930.0	0	NlpC/P60 domain-containing protein	N/A
eggNOG-mapper	UHGV-1487706_28	656024.FsymDg_2191	85.9	0.0000000000000022	Peptidoglycan-binding domain 1 protein	N/A
Pfam	UHGV-1487706_28	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
Pfam	UHGV-1487706_28	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
COG	UHGV-1487706_28	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-1487706_28	PF00877,PF00112,PF01471,NF033742,COG0791,COG4870	N/A	N/A	N/A	N/A
PHROG	UHGV-1487706_29	phrog_1863	81.5	5e-24	N/A	unknown function
UniRef90	UHGV-1487706_29	UniRef90_A0A2K9NYV1	93.2	2.17e-23	Holin	N/A
eggNOG-mapper	UHGV-1487706_29	556261.HMPREF0240_01265	88.6	2.21e-22	N/A	N/A
PHROG	UHGV-1487706_30	phrog_443	55.6	0.0000000000000015	holin	lysis
UniRef90	UHGV-1487706_30	UniRef90_UPI0009B98E42	90.5	1.44e-22	holin	N/A
eggNOG-mapper	UHGV-1487706_30	1235800.C819_01425	86.3	1.81e-21	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-1487706_30	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-1487706_30	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-1487706_31	phrog_36	63.1	5.4e-18	transcriptional regulator	transcription regulation
structural_annotation	UHGV-1487706_31	PF05263,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1487706_34	phrog_22543	44.0	0.000000000004	N/A	unknown function
PHROG	UHGV-1487706_35	phrog_599	51.3	7.8e-21	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1487706_35	UniRef90_A0A412AV49	109.0	1.45e-28	Restriction alleviation protein, Lar family	N/A
Pfam	UHGV-1487706_35	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-1487706_35	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-1487706_35	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
PHROG	UHGV-1487706_37	phrog_424	84.7	1.1e-24	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1487706_37	UniRef90_A0A2V2FLE3	733.0	0	PAPS_reduct domain-containing protein	N/A
eggNOG-mapper	UHGV-1487706_37	1235800.C819_02256	515.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-1487706_37	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1487706_37	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1487706_37	PF01507,MF_00063,TIGR00434,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-1487706_39	K24451	132.7	2.4e-39	zim; modification methylase	N/A
PHROG	UHGV-1487706_39	phrog_67	112.7	1.6e-33	DNA methyltransferase	other
UniRef90	UHGV-1487706_39	UniRef90_A0A7G9WJV4	474.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1487706_39	1120971.AUCA01000053_gene371	447.0	0	DNA methylase	N/A
PADLOC	UHGV-1487706_39	MTase_II_00139	102.9	6.2e-30	Type II methyltransferase	RM
Pfam	UHGV-1487706_39	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1487706_39	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1487706_39	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-1487706_40	phrog_62	185.1	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1487706_40	UniRef90_A0A7G9WJV3	582.0	0	Helicase	N/A
eggNOG-mapper	UHGV-1487706_40	411473.RUMCAL_00274	498.0	0	DEAD-like helicases superfamily	N/A
Pfam	UHGV-1487706_40	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-1487706_40	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1487706_40	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-1487706_40	PF18766,PF16203,MF_01821,TIGR04095,COG0553	N/A	N/A	N/A	N/A
PHROG	UHGV-1487706_41	phrog_3301	132.5	2e-39	pyrophosphatase	other
eggNOG-mapper	UHGV-1487706_41	411459.RUMOBE_01042	113.0	4.83e-31	Mazg nucleotide pyrophosphohydrolase	N/A
COG	UHGV-1487706_41	COG1694	N/A	N/A	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	N/A
structural_annotation	UHGV-1487706_41	COG1694	N/A	N/A	N/A	N/A
PHROG	UHGV-1487706_43	phrog_824	143.5	5.89947e-43	N/A	unknown function
UniRef90	UHGV-1487706_43	UniRef90_A0A2V2FQB3	280.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-1487706_43	1232452.BAIB02000007_gene1645	118.0	5e-32	VRR_NUC	N/A
Pfam	UHGV-1487706_43	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
PHROG	UHGV-1487706_44	phrog_270	100.5	2.1e-29	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1487706_44	UniRef90_A0A8B3R1H0	129.0	1.22e-32	Phage replication protein	N/A
eggNOG-mapper	UHGV-1487706_44	1226322.HMPREF1545_04072	122.0	7.39e-31	HNH endonuclease	N/A
COG	UHGV-1487706_44	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1487706_44	PF01475,NF006999,COG0735	N/A	N/A	N/A	N/A
KOfam	UHGV-1487706_45	K03111	140.9	1.29998e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1487706_45	phrog_44	140.7	8.00001e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1487706_45	UniRef90_A0A2V2FMD6	256.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1487706_45	1042163.BRLA_c031440	133.0	1.81e-38	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1487706_45	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1487706_45	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1487706_45	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1487706_45	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1487706_45	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1487706_46	phrog_7370	66.3	4.3e-19	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1487706_46	UniRef90_A0A2V2FQC1	220.0	0	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-1487706_46	445972.ANACOL_01826	110.0	2.5e-30	HNH nucleases	N/A
Pfam	UHGV-1487706_46	PF01844	N/A	N/A	HNH endonuclease	HNH
PHROG	UHGV-1487706_47	phrog_72	62.1	7.8e-18	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1487706_47	UniRef90_UPI000C7BF263	118.0	1.64e-30	recombination protein NinB	N/A
eggNOG-mapper	UHGV-1487706_47	1507.HMPREF0262_00432	131.0	2.64e-36	N/A	N/A
structural_annotation	UHGV-1487706_47	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-1487706_48	phrog_7838	147.6	8.40779e-44	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1487706_48	UniRef90_A0A8D9UGW3	199.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-1487706_48	742767.HMPREF9456_02052	167.0	0	N/A	N/A
structural_annotation	UHGV-1487706_48	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
PHROG	UHGV-1487706_49	phrog_2205	81.8	6e-24	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1487706_49	UniRef90_UPI00084D812A	95.5	1.46e-21	host-nuclease inhibitor Gam family protein	N/A
eggNOG-mapper	UHGV-1487706_49	445972.ANACOL_03335	77.4	0.00000000000000457	Bacteriophage Mu Gam like protein	N/A
Pfam	UHGV-1487706_49	PF07352	N/A	N/A	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
structural_annotation	UHGV-1487706_51	PF21805	N/A	N/A	N/A	N/A
PHROG	UHGV-1487706_53	phrog_4433	71.1	1.4e-20	N/A	unknown function
eggNOG-mapper	UHGV-1487706_53	886882.PPSC2_p0048	64.3	0.000000000171	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-1487706_53	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-1487706_53	NF007410	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1487706	Yes	36,818	50	100	1
UHGV-0080330	No	32,396	50	88	1