vOTU vOTU-071808

vOTU: vOTU-071808

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-071808
Number of genomes	2
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00001 → vSUBFAM-00143 → vGENUS-00097 → vSUBGEN-00058 → vOTU-071808
Host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0010941
Biosample ID	SAMEA4765906
Genome length (bp)	41,262 bps
CheckV completeness	99.90% (High-quality)
CDS count	63
CDS density	94.45%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella	Total connections	116	Host agreement	79.31
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0010941_5	PF19824,TIGR03090	N/A	N/A	N/A	N/A
PHROG	UHGV-0010941_6	phrog_1863	40.1	0.000000000025	N/A	unknown function
PHROG	UHGV-0010941_7	phrog_443	60.0	6.7e-17	holin	lysis
UniRef90	UHGV-0010941_7	UniRef90_UPI001896A9B9	131.0	1.09e-38	holin	N/A
eggNOG-mapper	UHGV-0010941_7	1125712.HMPREF1316_2355	77.0	6.38e-18	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0010941_7	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0010941_7	PF16945	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0010941_8	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0010941_9	phrog_16490	44.4	0.00000000000013	N/A	unknown function
eggNOG-mapper	UHGV-0010941_9	1235790.C805_00060	57.4	0.000000305	N/A	N/A
PHROG	UHGV-0010941_10	phrog_22984	53.6	0.0000000000000041	N/A	unknown function
PHROG	UHGV-0010941_11	phrog_21718	54.8	0.0000000000000016	N/A	unknown function
UniRef90	UHGV-0010941_11	UniRef90_A0A8D9PDT7	52.8	0.00000119	Membrane fusogenic activity protein	N/A
eggNOG-mapper	UHGV-0010941_11	476272.RUMHYD_01768	53.9	0.000000232	N/A	N/A
PHROG	UHGV-0010941_13	phrog_11037	78.1	9.2e-23	N/A	unknown function
UniRef90	UHGV-0010941_13	UniRef90_UPI001D0AE32A	543.0	0	SH3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0010941_13	428127.EUBDOL_01569	278.0	0	N/A	N/A
Pfam	UHGV-0010941_13	PF08460	N/A	N/A	Bacterial SH3 domain	SH3_5
structural_annotation	UHGV-0010941_13	PF08460,PF01551,NF040883,NF033202,COG0739,COG4991	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0010941_18	PF05895	N/A	N/A	N/A	N/A
PHROG	UHGV-0010941_19	phrog_9534	118.6	6.5e-35	head protein	head and packaging
eggNOG-mapper	UHGV-0010941_19	394503.Ccel_0827	84.7	7.36e-16	N/A	N/A
PHROG	UHGV-0010941_20	phrog_538	161.6	0	minor tail protein	tail
UniRef90	UHGV-0010941_20	UniRef90_UPI001D0B76DC	328.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0010941_20	428127.EUBDOL_01212	246.0	0	N/A	N/A
Pfam	UHGV-0010941_20	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0010941_20	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0010941_21	phrog_36410	68.7	4.9e-20	N/A	unknown function
UniRef90	UHGV-0010941_21	UniRef90_UPI001D0AA3C9	341.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-0010941_21	665956.HMPREF1032_02941	115.0	1.23e-27	Phage tail protein	N/A
structural_annotation	UHGV-0010941_21	PF16774,PF20753,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0010941_22	phrog_1686	222.1	0	tail length tape measure protein	tail
UniRef90	UHGV-0010941_22	UniRef90_UPI00189903CF	928.0	0	tape measure protein	N/A
eggNOG-mapper	UHGV-0010941_22	999413.HMPREF1094_00207	296.0	0	nuclear chromosome segregation	N/A
Pfam	UHGV-0010941_22	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0010941_22	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0010941_22	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0010941_22	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0010941_23	phrog_706	142.2	2.7003e-42	N/A	unknown function
UniRef90	UHGV-0010941_23	UniRef90_UPI001D0AAED0	371.0	0	bacteriophage Gp15 family protein	N/A
eggNOG-mapper	UHGV-0010941_23	999413.HMPREF1094_00208	150.0	1.69557e-43	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0010941_23	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0010941_23	PF06854	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0010941_24	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0010941_25	phrog_3099	82.1	8e-24	N/A	unknown function
eggNOG-mapper	UHGV-0010941_25	632245.CLP_1654	58.9	0.0000000432	N/A	N/A
structural_annotation	UHGV-0010941_25	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-0010941_26	UniRef90_UPI001D09DA0D	295.0	0	ABC transporter permease	N/A
structural_annotation	UHGV-0010941_26	PF16807	N/A	N/A	N/A	N/A
PHROG	UHGV-0010941_27	phrog_556	50.3	0.000000000000037	minor head protein	head and packaging
UniRef90	UHGV-0010941_27	UniRef90_UPI001D09B824	284.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0010941_27	552396.HMPREF0863_00274	89.7	4.54e-21	Minor capsid protein	N/A
Pfam	UHGV-0010941_27	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0010941_27	PF11114	N/A	N/A	N/A	N/A
UniRef90	UHGV-0010941_28	UniRef90_UPI001E2BB5D0	86.3	2.4e-19	minor capsid protein	N/A
structural_annotation	UHGV-0010941_28	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-0010941_30	phrog_212	239.0	0	major head protein	head and packaging
UniRef90	UHGV-0010941_30	UniRef90_UPI00189A455D	518.0	0	phage capsid protein	N/A
eggNOG-mapper	UHGV-0010941_30	552396.HMPREF0863_00277	379.0	0	N/A	N/A
structural_annotation	UHGV-0010941_30	PF05065,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0010941_31	phrog_194	104.9	8.5e-31	head scaffolding protein	head and packaging
UniRef90	UHGV-0010941_31	UniRef90_UPI001D0A686C	320.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0010941_31	1232449.BAHV02000010_gene2713	104.0	1.68e-25	N/A	N/A
Pfam	UHGV-0010941_31	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0010941_31	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0010941_33	phrog_581	275.4	0	minor head protein	head and packaging
UniRef90	UHGV-0010941_33	UniRef90_UPI001D0B3D9B	775.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0010941_33	552396.HMPREF0863_00280	259.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0010941_33	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0010941_33	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0010941_33	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0010941_34	phrog_533	255.9	0	portal protein	head and packaging
UniRef90	UHGV-0010941_34	UniRef90_UPI001430A874	569.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0010941_34	552396.HMPREF0863_00281	473.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0010941_34	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0010941_35	K06909	83.3	3.4e-24	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0010941_35	phrog_2	105.4	9.1e-31	terminase large subunit	head and packaging
UniRef90	UHGV-0010941_35	UniRef90_UPI001D0AA0D4	831.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0010941_35	552396.HMPREF0863_00282	470.0	0	DNA packaging	N/A
Pfam	UHGV-0010941_35	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0010941_35	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0010941_35	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0010941_36	phrog_2412	66.3	5.7e-19	N/A	unknown function
UniRef90	UHGV-0010941_36	UniRef90_UPI000427CABE	59.7	0.0000000257	KGG domain-containing protein	N/A
eggNOG-mapper	UHGV-0010941_36	1232449.BAHV02000018_gene1532	72.4	0.0000000000000922	N/A	N/A
KOfam	UHGV-0010941_37	K07319	132.4	4.1e-39	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0010941_37	phrog_498	450.9	0	DNA methyltransferase	other
UniRef90	UHGV-0010941_37	UniRef90_UPI001D0A8584	879.0	0	DNA modification methylase	N/A
eggNOG-mapper	UHGV-0010941_37	521003.COLINT_02335	427.0	0	DNA methylase	N/A
PADLOC	UHGV-0010941_37	MTase_II_00015	254.1	0	Type II methyltransferase	RM
Pfam	UHGV-0010941_37	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0010941_37	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0010941_37	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0010941_37	PF01555,PF02195,MF_02015,MF_01872,NF010253,TIGR04285,COG0863,COG1475	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0010941_38	TIGR01637	N/A	N/A	N/A	N/A
KOfam	UHGV-0010941_39	K14440	131.9	1.3e-39	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-0010941_39	phrog_62	393.8	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0010941_39	UniRef90_UPI001E5F6A13	882.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-0010941_39	552396.HMPREF0863_00284	543.0	0	SNF2 family N-terminal domain	N/A
PADLOC	UHGV-0010941_39	ZorD1_00007	98.3	9e-29	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-0010941_39	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0010941_39	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0010941_39	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0010941_39	PF13872,PF16203,MF_01821,NF041790,COG0553	N/A	N/A	N/A	N/A
PHROG	UHGV-0010941_40	phrog_93	70.3	2.6e-20	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0010941_40	UniRef90_UPI00189BA373	206.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0010941_40	226185.EF_0329	94.4	8.6e-24	VRR_NUC	N/A
structural_annotation	UHGV-0010941_40	PF01870,MF_00130,NF040854,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-0010941_42	phrog_2245	80.2	2.6e-23	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0010941_42	UniRef90_A0A373NRP8	67.8	0.00000000000174	MazG domain-containing protein	N/A
eggNOG-mapper	UHGV-0010941_42	326426.Bbr_0313	57.0	0.0000000366	N/A	N/A
structural_annotation	UHGV-0010941_42	MF_01020,TIGR03188,COG0140	N/A	N/A	N/A	N/A
PHROG	UHGV-0010941_43	phrog_256	975.9	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0010941_43	UniRef90_UPI001D0A1C03	1556.0	0	virulence-associated E family protein	N/A
eggNOG-mapper	UHGV-0010941_43	552396.HMPREF0863_00286	890.0	0	N/A	N/A
Pfam	UHGV-0010941_43	PF05272	N/A	N/A	Virulence-associated protein E-like domain	VapE-like_dom
COG	UHGV-0010941_43	COG5545	N/A	N/A	Predicted P-loop ATPase and inactivated derivatives	N/A
structural_annotation	UHGV-0010941_43	PF05272,MF_04000,NF005477,NF040562,COG5545	N/A	N/A	N/A	N/A
KOfam	UHGV-0010941_46	K02334	818.8	0	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	N/A
PHROG	UHGV-0010941_46	phrog_17	408.4	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0010941_46	UniRef90_UPI001D0A031A	1245.0	0	DNA polymerase	N/A
eggNOG-mapper	UHGV-0010941_46	1235796.C815_00942	615.0	0	DNA polymerase	N/A
Pfam	UHGV-0010941_46	PF00476	N/A	N/A	DNA polymerase family A	DNA_pol_A
COG	UHGV-0010941_46	COG0749	N/A	N/A	DNA polymerase I, 3'-5' exonuclease and polymerase domains	N/A
structural_annotation	UHGV-0010941_46	PF00476,MF_04101,NF011540,COG0749	N/A	N/A	N/A	N/A
PHROG	UHGV-0010941_47	phrog_112	140.8	7.90052e-42	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0010941_47	UniRef90_UPI001D0AB63B	395.0	0	N/A	N/A
eggNOG-mapper	UHGV-0010941_47	552396.HMPREF0863_00290	144.0	1.92999e-40	N/A	N/A
Pfam	UHGV-0010941_47	PF10991	N/A	N/A	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
structural_annotation	UHGV-0010941_47	PF10991,MF_04153	N/A	N/A	N/A	N/A
PHROG	UHGV-0010941_48	phrog_69	327.1	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0010941_48	UniRef90_UPI001D0AE809	709.0	0	N/A	N/A
eggNOG-mapper	UHGV-0010941_48	1235796.C815_00944	345.0	0	N/A	N/A
Pfam	UHGV-0010941_48	PF10926	N/A	N/A	N/A	DUF2800
COG	UHGV-0010941_48	COG2887	N/A	N/A	RecB family exonuclease	N/A
structural_annotation	UHGV-0010941_48	PF10926,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0010941_51	PF06786	N/A	N/A	N/A	N/A
PHROG	UHGV-0010941_53	phrog_33451	40.4	0.000000000033	N/A	unknown function
structural_annotation	UHGV-0010941_54	NF040990	N/A	N/A	N/A	N/A
UniRef90	UHGV-0010941_56	UniRef90_UPI0018980CB0	203.0	0	N/A	N/A
Pfam	UHGV-0010941_56	PF10711	N/A	N/A	N/A	DUF2513
KOfam	UHGV-0010941_61	K18830	61.2	2.4e-17	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
UniRef90	UHGV-0010941_61	UniRef90_UPI001D0B4888	172.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0010941_61	411470.RUMGNA_00191	94.0	4.24e-23	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0010941_61	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0010941_61	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0010941_61	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0010941_62	phrog_2967	45.2	0.0000000000013	transcriptional regulator	transcription regulation
UniRef90	UHGV-0010941_62	UniRef90_UPI001D09EDED	377.0	0	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0010941_62	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0010941_62	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0010941_62	PF00717,PF01381,MF_00015,TIGR00498,COG2932	N/A	N/A	N/A	N/A
KOfam	UHGV-0010941_63	K14059	221.1	0	int; integrase	N/A
PHROG	UHGV-0010941_63	phrog_1	208.1	0	integrase	integration and excision
UniRef90	UHGV-0010941_63	UniRef90_UPI00189BAE2B	727.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0010941_63	1124578.H0UST3_9CAUD	172.0	0	Phage integrase family	N/A
Pfam	UHGV-0010941_63	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-0010941_63	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0010941_63	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
structural_annotation	UHGV-0010941_63	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0010941	Yes	41,262	42	100	1
UHGV-0011917	No	22,697	44	57	1