vOTU vOTU-071810

vOTU: vOTU-071810

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-071810
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00373 → vGENUS-00237 → vSUBGEN-00275 → vOTU-071810
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → SFJ001
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1414865
Biosample ID	SAMEA3664655
Genome length (bp)	43,501 bps
CheckV completeness	98.23% (High-quality)
CDS count	70
CDS density	92.38%
tRNA count	3
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → SFJ001	Total connections	99	Host agreement	76.77
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 98.23)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1414865_4	phrog_757	182.5	0	DNA methyltransferase	other
UniRef90	UHGV-1414865_4	UniRef90_UPI001C00B13F	409.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1414865_4	748224.HMPREF9436_03069	322.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1414865_4	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1414865_4	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-1414865_6	phrog_236	86.3	5.9e-25	nucleotide kinase	other
UniRef90	UHGV-1414865_6	UniRef90_UPI000D110E3A	100.0	3.22e-25	N/A	N/A
eggNOG-mapper	UHGV-1414865_6	411473.RUMCAL_00920	77.0	1.05e-16	N/A	N/A
Pfam	UHGV-1414865_6	PF11753	N/A	N/A	N/A	DUF3310
structural_annotation	UHGV-1414865_6	PF11753	N/A	N/A	N/A	N/A
KOfam	UHGV-1414865_7	K01160	43.3	0.0000000000083	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1414865_7	phrog_1682	70.1	3.3e-20	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1414865_7	UniRef90_UPI0009406B47	97.4	9.53e-24	endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1414865_7	60520.HR47_13580	95.5	9.38e-24	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-1414865_7	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1414865_7	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-1414865_8	K02314	228.2	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-1414865_8	phrog_19	218.6	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1414865_8	UniRef90_UPI001F1C052D	436.0	0	replicative DNA helicase	N/A
eggNOG-mapper	UHGV-1414865_8	1203606.HMPREF1526_01325	161.0	2.3696e-42	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-1414865_8	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-1414865_8	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1414865_8	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1414865_8	PF03796,PF00772,MF_04155,NF005240,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-1414865_9	phrog_270	120.6	1.7e-35	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1414865_9	UniRef90_A0A7X3DHC7	95.1	7.64e-20	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1414865_9	1449126.JQKL01000003_gene1705	99.0	5.06e-22	ROK family	N/A
Pfam	UHGV-1414865_9	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-1414865_9	COG3355	N/A	N/A	Predicted transcriptional regulator	N/A
structural_annotation	UHGV-1414865_9	PF05584,MF_01819,TIGR01610,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-1414865_10	K03111	118.8	7.2e-35	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1414865_10	phrog_44	123.2	2.1e-36	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1414865_10	UniRef90_R6I6X7	129.0	6.83e-36	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1414865_10	445972.ANACOL_01827	121.0	1.3e-33	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1414865_10	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1414865_10	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1414865_10	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1414865_10	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1414865_10	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1414865_11	phrog_7566	79.6	2.6e-23	N/A	unknown function
UniRef90	UHGV-1414865_11	UniRef90_A0A8D9UHC0	78.6	8.56e-17	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-1414865_11	693746.OBV_25470	85.5	4.76e-20	N/A	N/A
PHROG	UHGV-1414865_12	phrog_72	58.3	9.2e-17	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1414865_12	UniRef90_UPI000C7BF263	167.0	0	recombination protein NinB	N/A
eggNOG-mapper	UHGV-1414865_12	445972.ANACOL_01825	142.0	9.95006e-41	N/A	N/A
structural_annotation	UHGV-1414865_12	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-1414865_13	phrog_7838	135.0	4.79999e-40	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1414865_13	UniRef90_A0A8D9UGW3	207.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-1414865_13	742767.HMPREF9456_02397	168.0	0	N/A	N/A
structural_annotation	UHGV-1414865_13	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
PHROG	UHGV-1414865_14	phrog_253	115.0	5.7e-34	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1414865_14	UniRef90_E2ZNS5	169.0	0	Siphovirus Gp157	N/A
eggNOG-mapper	UHGV-1414865_14	748224.HMPREF9436_03356	169.0	0	Siphovirus Gp157	N/A
Pfam	UHGV-1414865_14	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-1414865_14	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-1414865_17	phrog_24490	43.3	0.0000000000055	N/A	unknown function
eggNOG-mapper	UHGV-1414865_17	1235793.C809_02212	46.2	0.0000085	N/A	N/A
structural_annotation	UHGV-1414865_20	PF11034	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1414865_21	760568.Desku_0919	85.9	7.22e-18	N/A	N/A
structural_annotation	UHGV-1414865_21	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1414865_22	PF10743,NF033787	N/A	N/A	N/A	N/A
PHROG	UHGV-1414865_23	phrog_463	209.3	0	anti-repressor	transcription regulation
UniRef90	UHGV-1414865_23	UniRef90_UPI00137B411D	275.0	0	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-1414865_23	411490.ANACAC_00813	224.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-1414865_23	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1414865_23	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-1414865_23	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1414865_23	PF10552,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
PHROG	UHGV-1414865_24	phrog_8	46.4	0.00000000000083	transcriptional regulator	transcription regulation
UniRef90	UHGV-1414865_24	UniRef90_UPI001C009F10	112.0	3.1e-31	helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-1414865_24	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1414865_24	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1414865_24	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
COG	UHGV-1414865_25	COG4197	N/A	N/A	DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily	N/A
structural_annotation	UHGV-1414865_25	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1414865_27	324057.Pjdr2_0635	54.3	0.000000651	N/A	N/A
structural_annotation	UHGV-1414865_27	PF10358	N/A	N/A	N/A	N/A
Pfam	UHGV-1414865_28	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1414865_28	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1414865_28	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1414865_29	K14059	90.0	3.8e-26	int; integrase	N/A
PHROG	UHGV-1414865_29	phrog_1	95.7	6.1e-28	integrase	integration and excision
UniRef90	UHGV-1414865_29	UniRef90_UPI001897E1C8	160.0	5.67946e-42	site-specific integrase	N/A
eggNOG-mapper	UHGV-1414865_29	411471.SUBVAR_07390	95.1	2.48e-19	Phage integrase family	N/A
COG	UHGV-1414865_29	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1414865_29	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
UniRef90	UHGV-1414865_30	UniRef90_A0A4R1R5G7	77.8	3.22e-18	Anaerobic ribonucleoside-triphosphate reductase-like protein	N/A
eggNOG-mapper	UHGV-1414865_30	658088.HMPREF0987_00997	76.3	2.21e-18	Anaerobic ribonucleoside-triphosphate reductase	N/A
Pfam	UHGV-1414865_30	PF13597	N/A	N/A	Anaerobic ribonucleoside-triphosphate reductase	NRDD
COG	UHGV-1414865_30	COG1328	N/A	N/A	Anaerobic ribonucleoside-triphosphate reductase	N/A
eggNOG-mapper	UHGV-1414865_31	1506994.JNLQ01000004_gene3618	211.0	0	N/A	N/A
structural_annotation	UHGV-1414865_33	PF00210,MF_01441,NF011597,COG1528	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1414865_36	PF07638,MF_00674,TIGR02954,COG1846	N/A	N/A	N/A	N/A
PHROG	UHGV-1414865_37	phrog_1129	79.2	3e-23	holin	lysis
UniRef90	UHGV-1414865_37	UniRef90_A0A3R5ZDU6	135.0	6.15e-40	Holin	N/A
eggNOG-mapper	UHGV-1414865_37	1256908.HMPREF0373_00463	128.0	1.16e-37	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1414865_37	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1414865_37	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-1414865_38	phrog_1009	41.0	0.000000000026	N/A	unknown function
eggNOG-mapper	UHGV-1414865_38	97138.C820_00248	61.6	0.0000000000179	N/A	N/A
KOfam	UHGV-1414865_39	K07273	199.1	0	acm; lysozyme	N/A
PHROG	UHGV-1414865_39	phrog_291	155.5	0	endolysin	lysis
UniRef90	UHGV-1414865_39	UniRef90_UPI00164A97A0	194.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-1414865_39	411473.RUMCAL_02121	156.0	3.74007e-41	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-1414865_39	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1414865_39	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1414865_39	PF01183,PF05194,COG3757	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1414865_41	290402.Cbei_3386	58.5	0.000000517	N/A	N/A
PHROG	UHGV-1414865_42	phrog_13589	207.2	0	N/A	unknown function
eggNOG-mapper	UHGV-1414865_42	411460.RUMTOR_01324	235.0	0	N/A	N/A
PHROG	UHGV-1414865_43	phrog_31538	56.5	5.1e-16	N/A	unknown function
PHROG	UHGV-1414865_44	phrog_15594	83.4	1.8e-24	N/A	unknown function
eggNOG-mapper	UHGV-1414865_44	1118055.CAGU01000013_gene763	65.9	0.00000000000115	N/A	N/A
structural_annotation	UHGV-1414865_44	PF16640,TIGR04488	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1414865_45	665956.HMPREF1032_03918	118.0	1.68e-27	prophage protein Bartonella henselae str. Houston-1 gi 49237922 emb CAF27125.1	N/A
PHROG	UHGV-1414865_46	phrog_13046	45.1	0.00000000000042	N/A	unknown function
eggNOG-mapper	UHGV-1414865_46	693746.OBV_23880	104.0	2.89e-25	N/A	N/A
structural_annotation	UHGV-1414865_46	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-1414865_47	phrog_156	238.0	0	portal protein	head and packaging
eggNOG-mapper	UHGV-1414865_47	693746.OBV_23930	468.0	0	N/A	N/A
structural_annotation	UHGV-1414865_47	PF12236,MF_04120,TIGR01542,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-1414865_48	phrog_371	139.6	1.29998e-41	major head protein	head and packaging
UniRef90	UHGV-1414865_48	UniRef90_A0A1Y4TDW7	474.0	0	Mu-like_gpT domain-containing protein	N/A
eggNOG-mapper	UHGV-1414865_48	1226322.HMPREF1545_03848	285.0	0	N/A	N/A
Pfam	UHGV-1414865_48	PF10124	N/A	N/A	Mu-like prophage major head subunit gpT	Mu-like_gpT
structural_annotation	UHGV-1414865_48	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1414865_49	phrog_24113	57.6	1.7e-16	N/A	unknown function
eggNOG-mapper	UHGV-1414865_49	1226322.HMPREF1545_03847	52.4	0.000000867	N/A	N/A
structural_annotation	UHGV-1414865_49	PF11133,COG5471	N/A	N/A	N/A	N/A
PHROG	UHGV-1414865_50	phrog_35275	61.4	7.7e-18	N/A	unknown function
eggNOG-mapper	UHGV-1414865_50	1226322.HMPREF1545_03846	71.2	0.0000000000208	N/A	N/A
PHROG	UHGV-1414865_53	phrog_3287	177.8	0	virion structural protein	head and packaging
eggNOG-mapper	UHGV-1414865_53	665956.HMPREF1032_03917	677.0	0	N/A	N/A
structural_annotation	UHGV-1414865_53	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
KOfam	UHGV-1414865_54	K21523	46.6	0.00000000000013	gp17; terminase, large subunit [EC:3.1.-.-]	N/A
PHROG	UHGV-1414865_54	phrog_2	99.9	3.7e-29	terminase large subunit	head and packaging
UniRef90	UHGV-1414865_54	UniRef90_UPI001F401ABC	658.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-1414865_54	316274.Haur_1384	144.0	3.75e-35	N/A	N/A
Pfam	UHGV-1414865_54	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1414865_54	COG4373	N/A	N/A	Mu-like prophage FluMu protein gp28	N/A
structural_annotation	UHGV-1414865_54	PF03354,PF17289,MF_04146,TIGR01547,COG4373	N/A	N/A	N/A	N/A
Pfam	UHGV-1414865_56	PF08681	N/A	N/A	N/A	DUF1778
structural_annotation	UHGV-1414865_56	PF03869	N/A	N/A	N/A	N/A
COG	UHGV-1414865_57	COG0249	N/A	N/A	DNA mismatch repair ATPase MutS	N/A
PHROG	UHGV-1414865_60	phrog_17101	43.3	0.000000000004	N/A	unknown function
eggNOG-mapper	UHGV-1414865_61	1163671.JAGI01000002_gene1246	88.6	2.67e-20	N/A	N/A
eggNOG-mapper	UHGV-1414865_65	1235798.C817_04600	66.2	0.00000000000111	N/A	N/A
structural_annotation	UHGV-1414865_65	PF13560,NF040522	N/A	N/A	N/A	N/A
PHROG	UHGV-1414865_66	phrog_5070	147.6	3.50325e-44	N/A	unknown function
eggNOG-mapper	UHGV-1414865_66	1094556.MCY_01120	86.7	7.72e-17	Homologous to orf229 gp Streptococcus thermophilus bacteriophage Sfi19 gi 9632919 ref NP_049948.1	N/A
COG	UHGV-1414865_66	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
structural_annotation	UHGV-1414865_66	MF_01691,NF040481	N/A	N/A	N/A	N/A
PHROG	UHGV-1414865_67	phrog_36	74.5	1.7e-21	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-1414865_67	469618.FVAG_00790	51.2	0.00000281	N/A	N/A
Pfam	UHGV-1414865_67	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-1414865_67	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1414865_67	PF04545,MF_00674,NF009180,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-1414865_70	phrog_599	46.5	0.00000000000074	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1414865_70	UniRef90_A0A845MWR1	63.2	0.000000000012	Restriction alleviation protein, Lar family	N/A
Pfam	UHGV-1414865_70	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-1414865_70	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-1414865_70	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-1414865_70	PF14354,NF007260	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1414865	Yes	43,501	56	98	1