vOTU vOTU-071900

vOTU: vOTU-071900

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-071900
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00124 → vGENUS-00371 → vSUBGEN-11335 → vOTU-071900
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0144253
Biosample ID	SAMN05414927
Genome length (bp)	39,423 bps
CheckV completeness	97.33% (High-quality)
CDS count	63
CDS density	91.02%
tRNA count	2
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	716	Host agreement	98.88
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 97.33)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0144253_1	phrog_888	132.9	2.2e-39	N/A	unknown function
UniRef90	UHGV-0144253_1	UniRef90_A0A6N7TMA2	300.0	0	SHOCT domain-containing protein	N/A
eggNOG-mapper	UHGV-0144253_1	1415774.U728_165	87.8	5.24e-18	Short C-terminal domain	N/A
Pfam	UHGV-0144253_1	PF09851	N/A	N/A	Short C-terminal domain	SHOCT
structural_annotation	UHGV-0144253_1	PF15947,PF14471	N/A	N/A	N/A	N/A
PHROG	UHGV-0144253_5	phrog_1373	41.0	0.000000000019	transcriptional regulator	transcription regulation
UniRef90	UHGV-0144253_5	UniRef90_A0A2A7B6N3	396.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0144253_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0144253_5	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0144253_6	K14059	206.3	0	int; integrase	N/A
PHROG	UHGV-0144253_6	phrog_1	208.9	0	integrase	integration and excision
UniRef90	UHGV-0144253_6	UniRef90_A0A367GI93	248.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0144253_6	1507.HMPREF0262_00307	174.0	0	Phage integrase family	N/A
Pfam	UHGV-0144253_6	PF02899	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
Pfam	UHGV-0144253_6	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0144253_6	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0144253_6	PF00589,PF13102,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0144253_7	1408437.JNJN01000043_gene801	94.0	4.68e-21	N/A	N/A
eggNOG-mapper	UHGV-0144253_8	658655.HMPREF0988_00916	114.0	5.67e-31	N/A	N/A
PHROG	UHGV-0144253_9	phrog_16490	103.9	9.3e-38	N/A	unknown function
eggNOG-mapper	UHGV-0144253_9	1408437.JNJN01000043_gene803	164.0	0	N/A	N/A
PHROG	UHGV-0144253_14	phrog_15303	113.5	1e-33	N/A	unknown function
Pfam	UHGV-0144253_14	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
KOfam	UHGV-0144253_16	K07273	164.4	0	acm; lysozyme	N/A
PHROG	UHGV-0144253_16	phrog_291	128.7	6e-38	endolysin	lysis
UniRef90	UHGV-0144253_16	UniRef90_UPI001D0EE7D8	312.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-0144253_16	748224.HMPREF9436_00154	294.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0144253_16	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0144253_16	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0144253_16	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0144253_19	phrog_1067	195.7	0	minor head protein	head and packaging
UniRef90	UHGV-0144253_19	UniRef90_A0A2A7AM44	769.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0144253_19	1123263.AUKY01000068_gene489	191.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0144253_19	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0144253_19	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0144253_19	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0144253_19	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0144253_20	phrog_33	89.4	7e-26	distal tail protein Dit	tail
UniRef90	UHGV-0144253_20	UniRef90_A0A173Z1X4	147.0	2.21e-40	Phage-related protein	N/A
eggNOG-mapper	UHGV-0144253_20	1123315.AUIP01000014_gene1961	96.7	1.39e-21	tail component	N/A
COG	UHGV-0144253_20	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0144253_20	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0144253_21	phrog_9959	82.0	4e-24	tail length tape measure protein	tail
UniRef90	UHGV-0144253_21	UniRef90_A0A2A7B6K1	1508.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0144253_21	596328.HMPREF0578_1241	153.0	4.19e-35	phage tail tape measure protein	N/A
Pfam	UHGV-0144253_21	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0144253_21	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0144253_21	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0144253_21	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0144253_24	phrog_88	101.0	1.1e-29	major tail protein	tail
UniRef90	UHGV-0144253_24	UniRef90_UPI0018771F27	130.0	1.16e-34	phage tail protein	N/A
eggNOG-mapper	UHGV-0144253_24	349161.Dred_2600	68.2	0.0000000000469	N/A	N/A
NCBIFam	UHGV-0144253_24	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0144253_24	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
UniRef90	UHGV-0144253_25	UniRef90_A0A1C6FG30	134.0	9.08e-37	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0144253_25	1235798.C817_04589	109.0	5.68e-28	N/A	N/A
structural_annotation	UHGV-0144253_25	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0144253_26	999413.HMPREF1094_02005	73.9	0.0000000000000011	N/A	N/A
structural_annotation	UHGV-0144253_26	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0144253_27	phrog_19734	92.5	4.2e-27	N/A	unknown function
eggNOG-mapper	UHGV-0144253_27	349161.Dred_2602	75.1	0.00000000000000114	N/A	N/A
structural_annotation	UHGV-0144253_27	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0144253_28	phrog_749	57.1	2.8e-16	N/A	unknown function
UniRef90	UHGV-0144253_28	UniRef90_UPI0016630012	65.9	0.00000000000921	phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0144253_28	1235792.C808_00087	83.2	2.27e-19	N/A	N/A
PHROG	UHGV-0144253_29	phrog_10	137.9	6.09999e-41	major head protein	head and packaging
UniRef90	UHGV-0144253_29	UniRef90_A0A2A7B712	930.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0144253_29	1235792.C808_00086	458.0	0	Phage capsid family	N/A
Pfam	UHGV-0144253_29	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0144253_29	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0144253_29	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0144253_29	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0144253_29	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0144253_30	K01358	92.7	5.5e-27	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0144253_30	phrog_94	135.5	6.7e-40	head maturation protease	head and packaging
UniRef90	UHGV-0144253_30	UniRef90_UPI001C10F40E	164.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0144253_30	1232452.BAIB02000007_gene1626	139.0	5.58e-38	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0144253_30	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0144253_30	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0144253_30	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0144253_31	phrog_12	118.4	4.5e-35	portal protein	head and packaging
UniRef90	UHGV-0144253_31	UniRef90_A0A2A7B6S8	817.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0144253_31	349161.Dred_2606	273.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0144253_31	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0144253_31	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0144253_31	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0144253_31	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0144253_32	phrog_9	236.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0144253_32	UniRef90_A0A2A7ALT4	1049.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0144253_32	1235792.C808_00083	619.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0144253_32	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0144253_32	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0144253_32	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0144253_33	phrog_13845	58.0	1.3e-16	N/A	unknown function
eggNOG-mapper	UHGV-0144253_33	508419.F8J158_9CAUD	73.9	0.00000000000000241	N/A	N/A
structural_annotation	UHGV-0144253_33	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0144253_34	phrog_119	55.5	8.9e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0144253_34	UniRef90_A0A2A7AM49	235.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0144253_34	610130.Closa_0739	109.0	1.56e-29	HNH nucleases	N/A
Pfam	UHGV-0144253_34	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0144253_34	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
KOfam	UHGV-0144253_35	K03427	159.9	0	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-0144253_35	phrog_6380	344.7	0	DNA methyltransferase	other
UniRef90	UHGV-0144253_35	UniRef90_UPI0011DC86C4	526.0	0	N-6 DNA methylase	N/A
eggNOG-mapper	UHGV-0144253_35	1444306.JFZC01000034_gene2643	328.0	0	type I restriction-modification system	N/A
PADLOC	UHGV-0144253_35	MTase_I_00005	104.6	8.6e-31	Type I methyltransferase	RM
Pfam	UHGV-0144253_35	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-0144253_35	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0144253_35	PF02384,MF_01872,TIGR00497,COG0286	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0144253_38	PF04545	N/A	N/A	N/A	N/A
KOfam	UHGV-0144253_39	K03497	83.5	4.3e-24	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0144253_39	phrog_4715	115.4	5.8e-34	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0144253_39	UniRef90_A0A2A7B6Q0	713.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0144253_39	411471.SUBVAR_05842	178.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0144253_39	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0144253_39	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0144253_39	PF02195,MF_02015,TIGR03764,COG1475	N/A	N/A	N/A	N/A
UniRef90	UHGV-0144253_40	UniRef90_A0A355JDC2	107.0	7.64e-27	N/A	N/A
KOfam	UHGV-0144253_41	K03496	218.7	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0144253_41	phrog_164	156.4	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0144253_41	UniRef90_A0A2A7B6H3	523.0	0	AAA_31 domain-containing protein	N/A
eggNOG-mapper	UHGV-0144253_41	411471.SUBVAR_05839	226.0	0	AAA domain	N/A
Pfam	UHGV-0144253_41	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0144253_41	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0144253_41	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
PHROG	UHGV-0144253_42	phrog_6969	57.8	1.7e-16	N/A	unknown function
eggNOG-mapper	UHGV-0144253_42	1232446.BAIE02000002_gene816	65.5	0.000000000923	N/A	N/A
Pfam	UHGV-0144253_42	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
structural_annotation	UHGV-0144253_42	PF04182,MF_01819,TIGR04176,COG5625	N/A	N/A	N/A	N/A
KOfam	UHGV-0144253_43	K03111	137.8	1.3e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0144253_43	phrog_44	139.3	2.4e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0144253_43	UniRef90_A0A2A7B6R5	304.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0144253_43	748224.HMPREF9436_00638	209.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0144253_43	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0144253_43	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0144253_43	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0144253_43	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0144253_43	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0144253_44	phrog_7566	82.6	3.3e-24	N/A	unknown function
eggNOG-mapper	UHGV-0144253_44	411471.SUBVAR_05830	105.0	4.66e-28	N/A	N/A
PHROG	UHGV-0144253_46	phrog_72	51.1	0.000000000000022	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0144253_46	411471.SUBVAR_05829	140.0	9.11e-40	N/A	N/A
structural_annotation	UHGV-0144253_46	PF05772,NF007281	N/A	N/A	N/A	N/A
COG	UHGV-0144253_47	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0144253_47	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
UniRef90	UHGV-0144253_50	UniRef90_A0A098GES5	135.0	4.96e-39	Putative phage associated protein	N/A
structural_annotation	UHGV-0144253_50	PF01423,MF_00257,NF001963,COG1958	N/A	N/A	N/A	N/A
UniRef90	UHGV-0144253_58	UniRef90_UPI000BEF0F65	91.3	5.24e-23	helix-turn-helix transcriptional regulator	N/A
structural_annotation	UHGV-0144253_58	PF21291,TIGR03070,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0144253_59	phrog_8	45.2	0.0000000000023	transcriptional regulator	transcription regulation
UniRef90	UHGV-0144253_59	UniRef90_A0A2A7AM72	126.0	1.88e-35	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0144253_59	411460.RUMTOR_02056	55.1	0.0000000604	Bacteriophage CI repressor helix-turn-helix domain	N/A
Pfam	UHGV-0144253_59	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0144253_59	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-0144253_59	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0144253_60	PF21441,TIGR04176,COG1846	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0144253	Yes	39,423	53	97	1
UHGV-1492206	No	25,603	54	63	1
UHGV-0651906	No	15,944	55	39	1