vOTU vOTU-072062

vOTU: vOTU-072062

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-072062
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella → Holdemanella porci
Taxonomy (UHGV)	vFAM-00001 → vSUBFAM-00143 → vGENUS-00097 → vSUBGEN-00058 → vOTU-072062
Host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0029613
Biosample ID	SAMEA4765932
Genome length (bp)	40,019 bps
CheckV completeness	99.90% (High-quality)
CDS count	61
CDS density	93.13%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella	Total connections	130	Host agreement	81.54
PHIST-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella → Holdemanella porci	Total connections	19	Host agreement	89.47

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0029613_1	K14059	226.2	0	int; integrase	N/A
PHROG	UHGV-0029613_1	phrog_1	213.5	0	integrase	integration and excision
UniRef90	UHGV-0029613_1	UniRef90_UPI00189BAE2B	732.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0029613_1	1095750.HMPREF9970_0588	172.0	0	Arm DNA-binding domain	N/A
Pfam	UHGV-0029613_1	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-0029613_1	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0029613_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0029613_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0029613_1	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0029613_2	K07729	42.4	0.000000000011	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0029613_2	phrog_2967	51.3	0.000000000000017	transcriptional regulator	transcription regulation
UniRef90	UHGV-0029613_2	UniRef90_UPI001D09EDED	370.0	0	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0029613_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0029613_2	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0029613_2	PF00717,PF01381,MF_00015,TIGR00498,COG2932	N/A	N/A	N/A	N/A
KOfam	UHGV-0029613_3	K18830	55.3	0.0000000000000015	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0029613_3	phrog_8	44.6	0.00000000000076	transcriptional regulator	transcription regulation
UniRef90	UHGV-0029613_3	UniRef90_UPI00189831EE	139.0	1.4e-40	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0029613_3	525254.HMPREF0072_0267	79.3	1.46e-17	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0029613_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0029613_3	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0029613_3	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0029613_7	NF040990	N/A	N/A	N/A	N/A
PHROG	UHGV-0029613_13	phrog_69	321.1	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0029613_13	UniRef90_UPI001D0AE809	748.0	0	N/A	N/A
eggNOG-mapper	UHGV-0029613_13	1235796.C815_00944	337.0	0	N/A	N/A
Pfam	UHGV-0029613_13	PF10926	N/A	N/A	N/A	DUF2800
COG	UHGV-0029613_13	COG2887	N/A	N/A	RecB family exonuclease	N/A
structural_annotation	UHGV-0029613_13	PF10926,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-0029613_14	phrog_112	146.2	1.90577e-43	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0029613_14	UniRef90_UPI001D0AB63B	387.0	0	N/A	N/A
eggNOG-mapper	UHGV-0029613_14	552396.HMPREF0863_00290	143.0	3.72e-40	N/A	N/A
Pfam	UHGV-0029613_14	PF10991	N/A	N/A	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
structural_annotation	UHGV-0029613_14	PF10991,MF_04153	N/A	N/A	N/A	N/A
KOfam	UHGV-0029613_15	K02334	813.8	0	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	N/A
PHROG	UHGV-0029613_15	phrog_17	410.8	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0029613_15	UniRef90_UPI001D0A031A	1300.0	0	DNA polymerase	N/A
eggNOG-mapper	UHGV-0029613_15	1235796.C815_00942	624.0	0	DNA polymerase	N/A
Pfam	UHGV-0029613_15	PF00476	N/A	N/A	DNA polymerase family A	DNA_pol_A
COG	UHGV-0029613_15	COG0749	N/A	N/A	DNA polymerase I, 3'-5' exonuclease and polymerase domains	N/A
structural_annotation	UHGV-0029613_15	PF00476,MF_04101,NF011540,COG0749	N/A	N/A	N/A	N/A
PHROG	UHGV-0029613_18	phrog_256	977.2	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0029613_18	UniRef90_UPI001D0A1C03	1558.0	0	virulence-associated E family protein	N/A
eggNOG-mapper	UHGV-0029613_18	552396.HMPREF0863_00286	893.0	0	N/A	N/A
Pfam	UHGV-0029613_18	PF05272	N/A	N/A	Virulence-associated protein E-like domain	VapE-like_dom
COG	UHGV-0029613_18	COG5545	N/A	N/A	Predicted P-loop ATPase and inactivated derivatives	N/A
structural_annotation	UHGV-0029613_18	PF05272,MF_04000,NF005477,NF040562,COG5545	N/A	N/A	N/A	N/A
PHROG	UHGV-0029613_19	phrog_2245	78.4	8.9e-23	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0029613_19	UniRef90_A0A0G9MB91	67.8	0.00000000000545	MazG domain-containing protein	N/A
eggNOG-mapper	UHGV-0029613_19	1680.BADO_1259	66.2	0.00000000000361	N/A	N/A
PHROG	UHGV-0029613_21	phrog_93	70.8	1.8e-20	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0029613_21	UniRef90_UPI00189BA373	207.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0029613_21	1122146.AUHP01000010_gene1025	92.4	3.95e-23	VRR_NUC	N/A
structural_annotation	UHGV-0029613_21	PF01870,MF_00130,NF040854,COG1591	N/A	N/A	N/A	N/A
KOfam	UHGV-0029613_22	K14440	134.3	1.10001e-40	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-0029613_22	phrog_62	398.5	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0029613_22	UniRef90_UPI001E5F6A13	883.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-0029613_22	552396.HMPREF0863_00284	552.0	0	SNF2 family N-terminal domain	N/A
PADLOC	UHGV-0029613_22	ZorD1_00007	104.2	1.5e-30	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-0029613_22	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0029613_22	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0029613_22	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0029613_22	PF13872,PF16203,MF_01821,NF041790,COG0553	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0029613_23	TIGR01637	N/A	N/A	N/A	N/A
KOfam	UHGV-0029613_24	K07319	132.4	4e-39	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0029613_24	phrog_498	452.2	0	DNA methyltransferase	other
UniRef90	UHGV-0029613_24	UniRef90_UPI001D0A8584	882.0	0	DNA modification methylase	N/A
eggNOG-mapper	UHGV-0029613_24	521003.COLINT_02335	432.0	0	DNA methylase	N/A
PADLOC	UHGV-0029613_24	MTase_II_00015	255.3	0	Type II methyltransferase	RM
Pfam	UHGV-0029613_24	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0029613_24	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0029613_24	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0029613_24	PF01555,PF02195,MF_02015,MF_01872,NF010253,TIGR04285,COG0863,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0029613_25	phrog_2412	66.3	5.5e-19	N/A	unknown function
UniRef90	UHGV-0029613_25	UniRef90_UPI000427CABE	59.7	0.0000000257	KGG domain-containing protein	N/A
eggNOG-mapper	UHGV-0029613_25	1232449.BAHV02000018_gene1532	72.4	0.0000000000000922	N/A	N/A
KOfam	UHGV-0029613_26	K06909	84.5	1.4e-24	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0029613_26	phrog_2	105.6	7.8e-31	terminase large subunit	head and packaging
UniRef90	UHGV-0029613_26	UniRef90_UPI001D0AA0D4	834.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0029613_26	552396.HMPREF0863_00282	469.0	0	DNA packaging	N/A
Pfam	UHGV-0029613_26	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0029613_26	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0029613_26	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0029613_27	phrog_533	258.3	0	portal protein	head and packaging
UniRef90	UHGV-0029613_27	UniRef90_UPI001430A874	570.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0029613_27	552396.HMPREF0863_00281	471.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0029613_27	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0029613_28	phrog_581	278.5	0	minor head protein	head and packaging
UniRef90	UHGV-0029613_28	UniRef90_UPI001D0B3D9B	722.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0029613_28	552396.HMPREF0863_00280	262.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0029613_28	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0029613_28	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0029613_28	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0029613_29	phrog_3675	99.7	1.5e-29	N/A	unknown function
UniRef90	UHGV-0029613_29	UniRef90_UPI001D09CC06	196.0	0	YjcQ family protein	N/A
eggNOG-mapper	UHGV-0029613_29	1235799.C818_04221	85.9	1.98e-20	YjcQ protein	N/A
Pfam	UHGV-0029613_29	PF09639	N/A	N/A	YjcQ protein	YjcQ
structural_annotation	UHGV-0029613_29	PF09639,TIGR04176,COG2345	N/A	N/A	N/A	N/A
PHROG	UHGV-0029613_30	phrog_194	100.9	1.4e-29	head scaffolding protein	head and packaging
UniRef90	UHGV-0029613_30	UniRef90_UPI001D0A686C	323.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0029613_30	1232449.BAHV02000010_gene2713	101.0	2.53e-24	N/A	N/A
Pfam	UHGV-0029613_30	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0029613_30	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0029613_31	phrog_212	230.8	0	major head protein	head and packaging
UniRef90	UHGV-0029613_31	UniRef90_UPI00189A455D	616.0	0	phage capsid protein	N/A
eggNOG-mapper	UHGV-0029613_31	552396.HMPREF0863_00277	383.0	0	N/A	N/A
structural_annotation	UHGV-0029613_31	PF05065,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0029613_33	UniRef90_UPI001E2BB5D0	82.8	5.48e-18	minor capsid protein	N/A
structural_annotation	UHGV-0029613_33	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-0029613_34	phrog_556	48.1	0.00000000000017	minor head protein	head and packaging
UniRef90	UHGV-0029613_34	UniRef90_UPI001D09B824	283.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0029613_34	642492.Clole_0824	64.3	0.0000000000371	Minor capsid protein	N/A
Pfam	UHGV-0029613_34	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0029613_34	PF11114	N/A	N/A	N/A	N/A
UniRef90	UHGV-0029613_35	UniRef90_UPI001D09DA0D	303.0	0	ABC transporter permease	N/A
structural_annotation	UHGV-0029613_35	PF16807	N/A	N/A	N/A	N/A
PHROG	UHGV-0029613_36	phrog_3099	77.7	1.6e-22	N/A	unknown function
structural_annotation	UHGV-0029613_36	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0029613_37	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0029613_38	phrog_706	140.2	1.10002e-41	N/A	unknown function
UniRef90	UHGV-0029613_38	UniRef90_UPI001D0AAED0	384.0	0	bacteriophage Gp15 family protein	N/A
eggNOG-mapper	UHGV-0029613_38	999413.HMPREF1094_00208	152.0	5.74532e-44	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0029613_38	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0029613_38	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0029613_39	phrog_1686	244.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0029613_39	UniRef90_UPI001D0A3DB9	1196.0	0	tape measure protein	N/A
eggNOG-mapper	UHGV-0029613_39	999413.HMPREF1094_00207	308.0	0	nuclear chromosome segregation	N/A
Pfam	UHGV-0029613_39	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0029613_39	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0029613_39	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0029613_39	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0029613_40	phrog_36410	61.4	8.5e-18	N/A	unknown function
UniRef90	UHGV-0029613_40	UniRef90_UPI001897DDB7	547.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-0029613_40	428127.EUBDOL_01213	193.0	0	phage tail	N/A
COG	UHGV-0029613_40	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0029613_40	PF16774,PF20753,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0029613_41	phrog_538	129.1	3.8e-39	minor tail protein	tail
UniRef90	UHGV-0029613_41	UniRef90_UPI00189C3ED1	663.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0029613_41	428127.EUBDOL_01212	216.0	0	N/A	N/A
Pfam	UHGV-0029613_41	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0029613_41	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0029613_42	phrog_9534	106.7	2.8e-31	head protein	head and packaging
eggNOG-mapper	UHGV-0029613_42	665956.HMPREF1032_02939	78.2	0.0000000000000141	COG NOG18825 non supervised orthologous group	N/A
PHROG	UHGV-0029613_43	phrog_15594	78.5	6.2e-23	N/A	unknown function
eggNOG-mapper	UHGV-0029613_43	1118055.CAGU01000013_gene763	62.0	0.0000000000313	N/A	N/A
structural_annotation	UHGV-0029613_43	PF16640,TIGR04488	N/A	N/A	N/A	N/A
PHROG	UHGV-0029613_45	phrog_24103	90.4	4.8e-27	N/A	unknown function
eggNOG-mapper	UHGV-0029613_45	742735.HMPREF9467_00719	90.5	1.56e-19	N/A	N/A
PHROG	UHGV-0029613_47	phrog_4492	60.8	3.7e-18	tail fiber protein	tail
eggNOG-mapper	UHGV-0029613_47	931276.Cspa_c10280	56.2	0.00000499	nuclear chromosome segregation	N/A
COG	UHGV-0029613_47	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
structural_annotation	UHGV-0029613_47	PF03425,NF033675	N/A	N/A	N/A	N/A
PHROG	UHGV-0029613_48	phrog_24451	91.7	5.5e-27	N/A	unknown function
eggNOG-mapper	UHGV-0029613_48	931276.Cspa_c10290	73.9	0.0000000000000016	N/A	N/A
PHROG	UHGV-0029613_49	phrog_134	66.5	2.6e-19	N/A	unknown function
UniRef90	UHGV-0029613_49	UniRef90_A0A373VIX2	57.8	0.000000000314	XkdX family protein	N/A
Pfam	UHGV-0029613_49	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
NCBIFam	UHGV-0029613_49	TIGR01669.1	N/A	N/A	XkdX family protein	N/A
structural_annotation	UHGV-0029613_49	PF09693,TIGR01669	N/A	N/A	N/A	N/A
PHROG	UHGV-0029613_50	phrog_11037	79.5	3.5e-23	N/A	unknown function
UniRef90	UHGV-0029613_50	UniRef90_UPI001D0AE32A	585.0	0	SH3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0029613_50	428127.EUBDOL_01569	278.0	0	N/A	N/A
Pfam	UHGV-0029613_50	PF08460	N/A	N/A	Bacterial SH3 domain	SH3_5
structural_annotation	UHGV-0029613_50	PF08460,PF01551,NF040883,NF033202,COG0739,COG4991	N/A	N/A	N/A	N/A
PHROG	UHGV-0029613_52	phrog_21718	54.7	0.0000000000000016	N/A	unknown function
UniRef90	UHGV-0029613_52	UniRef90_A0A8D9PDT7	52.8	0.00000119	Membrane fusogenic activity protein	N/A
eggNOG-mapper	UHGV-0029613_52	476272.RUMHYD_01768	53.9	0.000000232	N/A	N/A
PHROG	UHGV-0029613_53	phrog_22984	51.9	0.000000000000013	N/A	unknown function
PHROG	UHGV-0029613_54	phrog_16490	42.2	0.00000000000044	N/A	unknown function
eggNOG-mapper	UHGV-0029613_54	1235790.C805_00060	57.4	0.000000305	N/A	N/A
structural_annotation	UHGV-0029613_55	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0029613_56	phrog_443	61.3	2.4e-17	holin	lysis
UniRef90	UHGV-0029613_56	UniRef90_UPI001896A9B9	130.0	2.2e-38	holin	N/A
eggNOG-mapper	UHGV-0029613_56	1125712.HMPREF1316_2355	79.0	1.1e-18	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0029613_56	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0029613_56	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0029613_57	phrog_1863	40.3	0.000000000021	N/A	unknown function
structural_annotation	UHGV-0029613_58	PF19824,TIGR03090	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0029613	Yes	40,019	43	100	1
UHGV-0002558	No	38,863	43	98	1