vOTU vOTU-072111

vOTU: vOTU-072111

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-072111
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → CAG-272 → CAG-448 → CAG-448 sp003150135
Taxonomy (UHGV)	vFAM-00264 → vSUBFAM-00917 → vGENUS-00826 → vSUBGEN-00396 → vOTU-072111
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → CAG-272 → CAG-448 → CAG-448 sp003150135
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0270964
Biosample ID	SAMN06115531
Genome length (bp)	34,383 bps
CheckV completeness	97.61% (High-quality)
CDS count	46
CDS density	94.61%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → CAG-272 → CAG-448 → CAG-448 sp003150135	Total connections	164	Host agreement	86.59
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → CAG-272 → CAG-448 → CAG-448 sp003150135	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 97.61)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0270964_2	UniRef90_A0A844U3V8	58.9	0.000000243	Leucine-rich repeat protein	N/A
eggNOG-mapper	UHGV-0270964_2	1250232.JQNJ01000001_gene2876	55.5	0.00000178	Leucine rich repeats (6 copies)	N/A
COG	UHGV-0270964_2	COG4886	N/A	N/A	Leucine-rich repeat (LRR) protein	N/A
structural_annotation	UHGV-0270964_3	PF01423,MF_00257,NF001963,COG1958	N/A	N/A	N/A	N/A
KOfam	UHGV-0270964_4	K03111	141.4	9.99967e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0270964_4	phrog_44	130.8	1e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0270964_4	UniRef90_A0A316RXZ4	155.0	1.4013e-45	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0270964_4	1121334.KB911069_gene1617	128.0	1.24e-35	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0270964_4	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0270964_4	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0270964_4	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0270964_4	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0270964_4	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0270964_5	phrog_6244	41.1	0.00000000004	N/A	unknown function
PHROG	UHGV-0270964_6	phrog_155	82.0	8.1e-24	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0270964_6	UniRef90_A0A1I7HAF1	173.0	0	ERF superfamily protein	N/A
eggNOG-mapper	UHGV-0270964_6	1034809.SLUG_08420	65.9	0.000000000401	ERF superfamily	N/A
Pfam	UHGV-0270964_6	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0270964_6	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
KOfam	UHGV-0270964_13	K22300	43.8	0.0000000000055	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0270964_13	phrog_8	59.3	7.5e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0270964_13	UniRef90_A0A8F2F0Z3	85.5	1.5e-18	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0270964_13	642492.Clole_0782	62.8	0.000000000172	addiction module antidote protein HigA	N/A
Pfam	UHGV-0270964_13	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0270964_13	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
KOfam	UHGV-0270964_15	K14059	207.7	0	int; integrase	N/A
PHROG	UHGV-0270964_15	phrog_1	170.9	0	integrase	integration and excision
UniRef90	UHGV-0270964_15	UniRef90_U2QJL8	213.0	0	Site-specific recombinase, phage integrase family	N/A
eggNOG-mapper	UHGV-0270964_15	1226322.HMPREF1545_00144	213.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0270964_15	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0270964_15	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0270964_15	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0270964_20	UniRef90_A0A345BNU6	145.0	7.92014e-42	Spore surface glycoprotein	N/A
structural_annotation	UHGV-0270964_20	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0270964_21	phrog_16490	51.4	0.000000000000024	N/A	unknown function
eggNOG-mapper	UHGV-0270964_21	1408437.JNJN01000043_gene803	72.8	0.000000000000738	N/A	N/A
KOfam	UHGV-0270964_28	K20846	60.1	2.3e-17	cgkA; kappa-carrageenase [EC:3.2.1.83]	N/A
PHROG	UHGV-0270964_28	phrog_215	70.1	5.9e-20	structural protein with Ig domain	head and packaging
eggNOG-mapper	UHGV-0270964_28	485916.Dtox_1961	65.9	0.0000000896	PFAM Bacterial Ig-like domain (group 2)	N/A
Pfam	UHGV-0270964_28	PF02368	N/A	N/A	Bacterial Ig-like domain (group 2)	Big_2
COG	UHGV-0270964_28	COG3210	N/A	N/A	Large exoprotein involved in heme utilization or adhesion	N/A
structural_annotation	UHGV-0270964_31	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0270964_37	33035.JPJF01000030_gene2294	178.0	0	N/A	N/A
structural_annotation	UHGV-0270964_37	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0270964_39	phrog_581	66.1	1.3e-20	minor head protein	head and packaging
UniRef90	UHGV-0270964_39	UniRef90_A0A2Z4GUI4	115.0	3.44e-25	Minor capsid protein 2	N/A
Pfam	UHGV-0270964_39	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0270964_39	COG2369	N/A	N/A	N/A	N/A
KOfam	UHGV-0270964_40	K00571	211.0	0	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0270964_40	phrog_67	201.5	0	DNA methyltransferase	other
UniRef90	UHGV-0270964_40	UniRef90_UPI00055C7461	260.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-0270964_40	712898.Pvag_0949	127.0	5.88e-31	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-0270964_40	MTase_II_00051	154.7	1.4013e-45	Type II methyltransferase	RM
Pfam	UHGV-0270964_40	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0270964_40	COG2189	N/A	N/A	Adenine specific DNA methylase Mod	N/A
structural_annotation	UHGV-0270964_40	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0270964_41	phrog_533	173.5	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0270964_41	411473.RUMCAL_01924	105.0	1.04e-21	N/A	N/A
structural_annotation	UHGV-0270964_41	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0270964_42	K06909	98.6	8.9e-29	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0270964_42	phrog_2	112.7	5.6e-33	terminase large subunit	head and packaging
UniRef90	UHGV-0270964_42	UniRef90_A0A0X8VA91	412.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-0270964_42	642492.Clole_0814	354.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0270964_42	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0270964_42	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0270964_42	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0270964_45	K01160	68.0	2.6e-19	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0270964_45	phrog_34	59.9	5.5e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0270964_45	UniRef90_A0A843HIU7	119.0	1.79e-32	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0270964_45	796940.HMPREF9628_00163	95.5	1.15e-23	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0270964_45	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0270964_45	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0270964_45	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0270964	Yes	34,383	55	98	1